NO06G01100.1, NO06G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01100.1
Unique NameNO06G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2657
Alignment locationchr6:352950..355606 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:352950..355606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01100.1 vs.
Match: EWM26105.1 (cystathionine beta-synthase [Nannochloropsis gaditana])

HSP 1 Score: 983.4 bits (2541), Expect = 3.000e-283
Identity = 494/565 (87.43%), Postives = 523/565 (92.57%), Query Frame = 0 
Query:    2 STSGDAPAICPYAGTKR--KPSAAAAAAADGATYRQGRTDGPVKCTWTPNTTEASPHLHETHQPKPKILNTILDHIGDTPLVRINKITEAEGIKCEVLAKCEFFNSGGSVKDRIGKRMIEDAERSGRIKPGDTLIEPTSGNTGIGLALAAAIKGYRMIITLPEKMSREKVDILKALGAEIIRTPTEAAYDSPDSHIGVAKRLQSEIPNSHILDQYSNASNPIAHYDHTAEELLEQTGGQIDVLVISAGTGGTLTGIGRKLKERLPHLTIVGVDPVGSILAEPDSLNDRDRLTSYKVEGIGYDFVPTVLDRALVDEWLKTDDRESLLMARRLIRDEGLLCGGSCGSAMAAAVRVAKSLPAGKRVVVLLPDSSRNYMTKLVSDQWMIEAGFADGNLIDRPQYKTWWAKKRVQDLHLQTPITIAPGVTCKEAIGLLSAQGFDTLPVISVDGQILGVVTEGNLTAKLVSNRVQPDDDITCALYPQFRKVNMGDTLGDLANIFDRDHYALVVAEQLQYTGGKSMMMKGGGGGEGGGEKRVLPSATRSVVTGVATRIDLLNYISSKPVEEV 565
            S+ GD+   CP+   KR   PS++ A AADGATYRQGR+DGPVKCTWTP TTEASPH+HE  +PKPKILN ILDHIGDTPLVRIN IT +EGIKCE+LAKCEFFNSGGSVKDRIGKRMIEDAERSG IKPGDTLIEPTSGNTGIGLALAAAIKGYRMIITLPEKMSREKVDILKALGAEI+RTPTEAA+DSPDSHIGVAKRLQ+EIPNSHILDQY+N SNP+AHYDHTAEELLEQT G ID LV+SAGTGGTLTG GRKLKERLP+LTIVGVDPVGSILAEPD+LN+RDRLTSYKVEGIGYDFVPTVLDRALVDEW+KTDD+ESLLMARRLIRDEGLLCGGSCGSAMAAAVR+AK+LP GKRVVVLLPDSSRNYMTKL+SD+WM+EAGFADG LIDRPQYKTWWAKKRVQDLHLQTPITIAPGV+CKEAIGLLSAQGFDTLPVISVDG+ILGVVTEGNLTAKLVSNRVQPDDDIT ALYPQFRKVNMGDTLGDLANIFDRDHYALVVAEQLQYTG K        GG   G K +LPSATRSVVTGVATRIDLLNYISS PVEEV
Sbjct:   13 SSGGDSATSCPHLEKKRMSSPSSSVADAADGATYRQGRSDGPVKCTWTPWTTEASPHIHEARRPKPKILNNILDHIGDTPLVRINNITASEGIKCEILAKCEFFNSGGSVKDRIGKRMIEDAERSGLIKPGDTLIEPTSGNTGIGLALAAAIKGYRMIITLPEKMSREKVDILKALGAEIVRTPTEAAFDSPDSHIGVAKRLQTEIPNSHILDQYANPSNPLAHYDHTAEELLEQTDGHIDFLVVSAGTGGTLTGTGRKLKERLPNLTIVGVDPVGSILAEPDALNERDRLTSYKVEGIGYDFVPTVLDRALVDEWVKTDDKESLLMARRLIRDEGLLCGGSCGSAMAAAVRIAKTLPVGKRVVVLLPDSSRNYMTKLISDKWMLEAGFADGRLIDRPQYKTWWAKKRVQDLHLQTPITIAPGVSCKEAIGLLSAQGFDTLPVISVDGKILGVVTEGNLTAKLVSNRVQPDDDITSALYPQFRKVNMGDTLGDLANIFDRDHYALVVAEQLQYTGAK--------GGAVPGAKGLLPSATRSVVTGVATRIDLLNYISSTPVEEV 569
The following BLAST results are available for this feature:
BLAST of NO06G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26105.13.000e-28387.43cystathionine beta-synthase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01100NO06G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01100.1NO06G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01100.1.cds1NO06G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01100.1 ID=NO06G01100.1|Name=NO06G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp
ATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTACGCCGGTACGAA
ACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATGGAGCTACCTACC
GTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGGACCCCCAACACT
ACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCCCAAGCCGAAAAT
CCTCAATACGATTCTCGATCATATTGGTGATACTCCGCTGGTGCGCATCA
ACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTTCTGGCCAAGTGT
GAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAATTGGAAAGCGGAT
GATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGGGGGACACGTTGA
TTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCCTTGGCTGCCGCG
ATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAAAATGTCGCGGGA
AAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCATCAGAACACCTA
CGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGCGTGGCGAAGCGC
TTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCAGTACTCGAACGC
GTCTAATCCCATTGCGCATTATGACCACACCGCGGAGGAGCTCCTCGAGC
AGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCAGGAACCGGGGGC
ACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATTGCCGCATTTGAC
GATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGGAGCCGGATAGTT
TGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAGGGCATTGGCTAT
GACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGATGAGTGGTTAAA
GACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGCTGATCAGAGACG
AAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATGGCAGCAGCAGTG
AGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGTGGTGCTGTTGCC
GGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGGACCAGTGGATGA
TTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGCCCGCAGTACAAA
ACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCTCCAAACCCCCAT
AACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCGGTCTCCTCTCAG
CACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGATGGGCAGATCCTG
GGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGTCTCCAACAGGGT
CCAGCCGGATGATGACATTACATGTGCGTTGTACCCGCAGTTCCGCAAGG
TAAACATGGGGGACACACTCGGGGACTTGGCCAACATTTTCGACAGGGAC
CACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACACGGGGGGAAAGAG
TATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGGGGGAGAAGAGGG
TGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTGGCGACGCGGATC
GATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGAAGTGGGATATGG
GGGTGTCTGAGAGGAATGTTAGAGGGAAGGAAGGATGGATGGAGGGAGGG
ACGGAAGGGCTTGAGAGTGATGGGTGGGGATGTAGAATGTTTTTTCTGGG
TTGCCTTCAATTTTTCTCCGTCGGAGTGATGAAAGAGGAAAGCGAAAATT
TGGGCATTTATGTGCATAGAGTGTGCCTGTCACATAGAACATGTGTGTTT
TCTCATTCAATAATTGTTAATTCGAGGGATAGAATATTGTTAGTGCGCTG
CAATGTAAACTCTTGCTATAATTTATGGAGCGGGAGACGCACACGTCTGC
AACAACAGCAAGGGAAGAGACATGACAGCGACTGGTAAGAGCAGTACGAG
GAAGAAGAGCAAGAGCAGCATCAGCACTGGCGGCAGCAGTATAAGCAGAA
AGAGCTGCAGTAGCATATCTTAGACAAAGCAAAAAAATGTCGACAGATAG
GGAGATAAAAAGAAGGACAGCTGCACTTTAAATAAGCAAAAGAGGGAAGA
AGTATAACGGATAGGGGGGTTGGGGACGTGGCAATACTGGCGTGTGTCAC
AGCCTATGTACATTTTGACATGTCCGATGGCTGACTGGCATTTGAGCAGC
ACCCCCCCCCCGCTCCCCGAGTTAATGCTTAGTTGCAACCCCTTAATGGA
AATAAATATGAAGAGAGGCAGGAGAAGAAGGATGCACCAGTAGCGAATAA
GCAAGTTGTTTTTATCTACGTCGGGCGGTCTGTCGTATAGCGAAACAATG
CGGAAAGATGAAAGAGAACACAGAGGAGAAAATGTTTTGGAGATGGATGA
TATCCAACCGACCAGAAAAAGAAAGGGCAAGAAAAAAGGTAGATGCCGAA
AGATGTTGATAGCTAGCTTCCTTTGATGAGACGTGAGTACGCAGCCGGTC
GAAAAGATGAAAAAATTGGAGGGGAAAATAAACGTACGAGTCAGCCCTCG
CTTCTCA
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protein sequence of NO06G01100.1

>NO06G01100.1-protein ID=NO06G01100.1-protein|Name=NO06G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MSTSGDAPAICPYAGTKRKPSAAAAAAADGATYRQGRTDGPVKCTWTPNT
TEASPHLHETHQPKPKILNTILDHIGDTPLVRINKITEAEGIKCEVLAKC
EFFNSGGSVKDRIGKRMIEDAERSGRIKPGDTLIEPTSGNTGIGLALAAA
IKGYRMIITLPEKMSREKVDILKALGAEIIRTPTEAAYDSPDSHIGVAKR
LQSEIPNSHILDQYSNASNPIAHYDHTAEELLEQTGGQIDVLVISAGTGG
TLTGIGRKLKERLPHLTIVGVDPVGSILAEPDSLNDRDRLTSYKVEGIGY
DFVPTVLDRALVDEWLKTDDRESLLMARRLIRDEGLLCGGSCGSAMAAAV
RVAKSLPAGKRVVVLLPDSSRNYMTKLVSDQWMIEAGFADGNLIDRPQYK
TWWAKKRVQDLHLQTPITIAPGVTCKEAIGLLSAQGFDTLPVISVDGQIL
GVVTEGNLTAKLVSNRVQPDDDITCALYPQFRKVNMGDTLGDLANIFDRD
HYALVVAEQLQYTGGKSMMMKGGGGGEGGGEKRVLPSATRSVVTGVATRI
DLLNYISSKPVEEVGYGGV*
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mRNA from alignment at chr6:352950..355606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01100.1 ID=NO06G01100.1|Name=NO06G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp|location=Sequence derived from alignment at chr6:352950..355606+ (Nannochloropsis oceanica)
ATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTACGCCGGTACGAA
ACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATGGAGCTACCTACC
GTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGGACCCCCAACACT
ACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCCCAAGCCGAAAAT
CCTCAATACGATTCTCGATCATATTGGTGATACTCCGCTGGTGCGCATCA
ACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTTCTGGCCAAGTGT
GAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAATTGGAAAGCGGAT
GATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGGGGGACACGTTGA
TTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCCTTGGCTGCCGCG
ATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAAAATGTCGCGGGA
AAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCATCAGAACACCTA
CGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGCGTGGCGAAGCGC
TTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCAGTACTCGAACGC
GTCTAATCCCATTGCGCATTATGACCACACCGCGGAGGAGCTCCTCGAGC
AGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCAGGAACCGGGGGC
ACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATTGCCGCATTTGAC
GATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGGAGCCGGATAGTT
TGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAGGGCATTGGCTAT
GACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGATGAGTGGTTAAA
GACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGCTGATCAGAGACG
AAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATGGCAGCAGCAGTG
AGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGTGGTGCTGTTGCC
GGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGGACCAGTGGATGA
TTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGCCCGCAGTACAAA
ACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCTCCAAACCCCCAT
AACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCGGTCTCCTCTCAG
CACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGATGGGCAGATCCTG
GGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGTCTCCAACAGGGT
CCAGCCGGATGATGACATTACATGTGCGTTGTACCCGCAGTTCCGCAAGG
TAAACATGGGGGACACACTCGGGGACTTGGCCAACATTTTCGACAGGGAC
CACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACACGGGGGGAAAGAG
TATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGGGGGAGAAGAGGG
TGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTGGCGACGCGGATC
GATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGAAGTGGGATATGG
GGGTGTCTGAGAGGAATGTTAGAGGGAAGGAAGGATGGATGGAGGGAGGG
ACGGAAGGGCTTGAGAGTGATGGGTGGGGATGTAGAATGTTTTTTCTGGG
TTGCCTTCAATTTTTCTCCGTCGGAGTGATGAAAGAGGAAAGCGAAAATT
TGGGCATTTATGTGCATAGAGTGTGCCTGTCACATAGAACATGTGTGTTT
TCTCATTCAATAATTGTTAATTCGAGGGATAGAATATTGTTAGTGCGCTG
CAATGTAAACTCTTGCTATAATTTATGGAGCGGGAGACGCACACGTCTGC
AACAACAGCAAGGGAAGAGACATGACAGCGACTGGTAAGAGCAGTACGAG
GAAGAAGAGCAAGAGCAGCATCAGCACTGGCGGCAGCAGTATAAGCAGAA
AGAGCTGCAGTAGCATATCTTAGACAAAGCAAAAAAATGTCGACAGATAG
GGAGATAAAAAGAAGGACAGCTGCACTTTAAATAAGCAAAAGAGGGAAGA
AGTATAACGGATAGGGGGGTTGGGGACGTGGCAATACTGGCGTGTGTCAC
AGCCTATGTACATTTTGACATGTCCGATGGCTGACTGGCATTTGAGCAGC
ACCCCCCCCCCGCTCCCCGAGTTAATGCTTAGTTGCAACCCCTTAATGGA
AATAAATATGAAGAGAGGCAGGAGAAGAAGGATGCACCAGTAGCGAATAA
GCAAGTTGTTTTTATCTACGTCGGGCGGTCTGTCGTATAGCGAAACAATG
CGGAAAGATGAAAGAGAACACAGAGGAGAAAATGTTTTGGAGATGGATGA
TATCCAACCGACCAGAAAAAGAAAGGGCAAGAAAAAAGGTAGATGCCGAA
AGATGTTGATAGCTAGCTTCCTTTGATGAGACGTGAGTACGCAGCCGGTC
GAAAAGATGAAAAAATTGGAGGGGAAAATAAACGTACGAGTCAGCCCTCG
CTTCTCA
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Coding sequence (CDS) from alignment at chr6:352950..355606+

>NO06G01100.1 ID=NO06G01100.1|Name=NO06G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr6:352950..355606+ (Nannochloropsis oceanica)
ATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTACGCCGGTACGAA
ACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATGGAGCTACCTACC
GTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGGACCCCCAACACT
ACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCCCAAGCCGAAAAT
CCTCAATACGATTCTCGATCATATTGGTGATACTCCGCTGGTGCGCATCA
ACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTTCTGGCCAAGTGT
GAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAATTGGAAAGCGGAT
GATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGGGGGACACGTTGA
TTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCCTTGGCTGCCGCG
ATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAAAATGTCGCGGGA
AAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCATCAGAACACCTA
CGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGCGTGGCGAAGCGC
TTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCAGTACTCGAACGC
GTCTAATCCCATTGCGCATTATGACCACACCGCGGAGGAGCTCCTCGAGC
AGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCAGGAACCGGGGGC
ACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATTGCCGCATTTGAC
GATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGGAGCCGGATAGTT
TGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAGGGCATTGGCTAT
GACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGATGAGTGGTTAAA
GACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGCTGATCAGAGACG
AAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATGGCAGCAGCAGTG
AGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGTGGTGCTGTTGCC
GGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGGACCAGTGGATGA
TTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGCCCGCAGTACAAA
ACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCTCCAAACCCCCAT
AACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCGGTCTCCTCTCAG
CACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGATGGGCAGATCCTG
GGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGTCTCCAACAGGGT
CCAGCCGGATGATGACATTACATGTGCGTTGTACCCGCAGTTCCGCAAGG
TAAACATGGGGGACACACTCGGGGACTTGGCCAACATTTTCGACAGGGAC
CACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACACGGGGGGAAAGAG
TATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGGGGGAGAAGAGGG
TGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTGGCGACGCGGATC
GATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGAAGTGGGATATGG
GGGTGTCTGA
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Synonyms
Publications