NO06G01060.1, NO06G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01060.1
Unique NameNO06G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1708
Alignment locationchr6:340635..343070 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:340635..343070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01060.1 vs.
Match: EWM26113.1 (phosphoglycerate kinase [Nannochloropsis gaditana])

HSP 1 Score: 683.3 bits (1762), Expect = 4.500e-193
Identity = 355/433 (81.99%), Postives = 378/433 (87.30%), Query Frame = 0 
Query:    1 MSGKETLKSLASNTELKGERVFVRVDFN------------------------------VPLDKESKVTDDTRIRAALPTIKFLVEKEARVILCSHLGRPKGVTESLRLGPVAARLSELLGTDVVYLKDCVGDEIESSVAALTPGQVALLENVRFYPEEEKNAPDFAKKLARLADVYVNDAFGTAHRAHASTEGVAKLVKATCAGFLMEKELDYLDGAVKNPKRPFAAIVGGSKVSTKITVVEALINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLEIIAKEKGVKLVLPTDVVIADKFSADAESKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEFDKFATGTSAIAQTMAELTSKGATTIVGGGDSVAAVEKAGLGEKLSHVSTGGGASLEMLEGKVLPGVAAIQDAK 404
            MSGKETLKSLAS  +LK +RVF RVDFN                              VPLDKE+KVTDDTRIRAALPTIKFLVEK ARV+LCSHLGRPKGVTESLR+ PVA RLSELLG++V Y+KDCVG+E+E  V AL+ GQV LLENVRFY EEEKNAP+FA KLARLADVYVNDAFGTAHRAHASTEG+AKLVK TCAGFLMEKEL YLDGAV  P RPFAAIVGGSKVSTKITVVE LINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLE +AKEKGVKL+LPTDVVIADKFSADA+SKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEF+KFA GTSAIA+T+AELTSKGATTIVGGGDSVAAVE+AGL +KLSHVSTGGGASLEMLEG+ LPGVAAIQDA+
Sbjct:    1 MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLVEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVSTKITVVETLINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLESMAKEKGVKLILPTDVVIADKFSADAQSKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEFEKFAAGTSAIAKTLAELTSKGATTIVGGGDSVAAVEQAGLADKLSHVSTGGGASLEMLEGRTLPGVAAIQDAQ 433
The following BLAST results are available for this feature:
BLAST of NO06G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26113.14.500e-19381.99phosphoglycerate kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01060NO06G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01060.1NO06G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01060.1.cds1NO06G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.1.cds2NO06G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.1.cds3NO06G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.1.cds4NO06G01060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.1.cds5NO06G01060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.1.cds6NO06G01060.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01060.1 ID=NO06G01060.1|Name=NO06G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp
ACAGGGCCTCCAGTTTCTCGTTCTTCTCTCAAGCAAATCGCTTCAAAAAC
CCGCCGTCTTCCATCCATTATGTCTGGAAAGGAGACGCTCAAGAGCCTGG
CCAGTAATACTGAGCTTAAGGGCGAACGAGTTTTCGTCCGCGTTGATTTC
AATGTCCCTCTTGATAAGGAGTCCAAGGTCACGGACGACACTCGCATCCG
CGCCGCTCTCCCCACCATCAAGTTCCTGGTGGAAAAAGAGGCCCGCGTCA
TCCTCTGTAGTCACCTCGGCCGTCCAAAGGGCGTGACTGAATCCCTGCGC
CTGGGTCCTGTCGCTGCCCGCCTCTCCGAGCTCTTAGGCACAGACGTTGT
GTACCTCAAAGACTGTGTGGGCGACGAAATCGAGTCGTCTGTCGCTGCCC
TCACTCCGGGACAAGTTGCCCTGTTGGAGAACGTGCGTTTCTATCCGGAG
GAGGAGAAGAATGCGCCGGACTTTGCTAAGAAGCTCGCGAGGCTTGCCGA
TGTGTATGTCAATGACGCGTTCGGGACGGCGCACCGTGCGCATGCGAGTA
CCGAGGGGGTTGCCAAGCTCGTGAAGGCGACGTGTGCCGGTTTTTTGATG
GAAAAGGAGTTGGACTATCTGGATGGGGCGGTCAAGAACCCGAAGAGACC
TTTTGCAGCAATTGTGGGGGGATCCAAGGTCTCGACCAAAATCACGGTGG
TGGAGGCCCTCATCAACAAGGTTGACAAGCTCATCATCGGCGGGGGCATG
GTCTTCACCTTCCTCAAGGCCCAGGGCCACGGGGTCGGTTCATCCCTCGT
GGAAGAGGATTTCCTTGAGCTCGCAAAGAAATTGGAAATCATCGCCAAGG
AGAAAGGAGTCAAGCTCGTTCTTCCCACCGACGTGGTGATTGCTGATAAA
TTTTCTGCCGATGCGGAAAGCAAAGTGGTGCCCGCGACTGAGATCCCCGA
CGGGTGGATGGGCCTCGACAACGGCCCGGAGACGACCAAGATGATCCAGG
CGGAGCTCGCGGACTGCAAGACCATCATCTGGAATGGTCCCATGGGCGTG
TTTGAGTTCGACAAATTCGCCACAGGCACCAGCGCGATTGCCCAGACTAT
GGCGGAATTGACGTCCAAGGGCGCTACTACTATTGTGGGTGGAGGGGATT
CAGTGGCTGCTGTGGAGAAGGCAGGACTGGGGGAAAAGTTGTCGCATGTC
TCGACGGGGGGTGGGGCCTCGTTGGAGATGCTGGAAGGGAAGGTGTTGCC
GGGTGTGGCGGCGATCCAGGATGCGAAGTGAAGGGGGGATCGGGAGGGAG
GAAAGGAGGGAGGAACAAGGAGTTTGCTTTAGGTGGGATTGAGAATGAGT
GTGTGGGGGGGCTATAGTAAGAGAACAAGGATTTCTGTTTGGAAGTCAAG
GAATCTAGTATTTTGAGTTATGGAAGAGTTTGACGGAAAGTGTTGTGACT
GAAAGGCGATCAGGGTAGAAAACACGATCAAACGTGAAGAACTCGGACGA
GATAATAAGAGCAGAAGAGAGGCGAGAGGAAGAGGGAAGTGGAAGATGAT
TGTGGTGGTATTTATGCCGTCACAAGCGACAGACAGCAGAGAAAAAAGGG
GCGGAAGAATGAAGTGACGACGACACGCTTTGCCTGTATTTGCTTGGCCC
GTTTCTCTCCCGTAGGCACTCATTCGCCCACCCCGAAACGGTGTGTTTTG
GGGAAGAG
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protein sequence of NO06G01060.1

>NO06G01060.1-protein ID=NO06G01060.1-protein|Name=NO06G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MSGKETLKSLASNTELKGERVFVRVDFNVPLDKESKVTDDTRIRAALPTI
KFLVEKEARVILCSHLGRPKGVTESLRLGPVAARLSELLGTDVVYLKDCV
GDEIESSVAALTPGQVALLENVRFYPEEEKNAPDFAKKLARLADVYVNDA
FGTAHRAHASTEGVAKLVKATCAGFLMEKELDYLDGAVKNPKRPFAAIVG
GSKVSTKITVVEALINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLE
LAKKLEIIAKEKGVKLVLPTDVVIADKFSADAESKVVPATEIPDGWMGLD
NGPETTKMIQAELADCKTIIWNGPMGVFEFDKFATGTSAIAQTMAELTSK
GATTIVGGGDSVAAVEKAGLGEKLSHVSTGGGASLEMLEGKVLPGVAAIQ
DAK*
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mRNA from alignment at chr6:340635..343070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01060.1 ID=NO06G01060.1|Name=NO06G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp|location=Sequence derived from alignment at chr6:340635..343070+ (Nannochloropsis oceanica)
ACAGGGCCTCCAGTTTCTCGTTCTTCTCTCAAGCAAATCGCTTCAAAAAC
CCGCCGTCTTCCATCCATTATGTCTGGTACGTCTCGTGCCACCGTCGCTC
CAACCCGCACGCACCTCATGGAGCAAATAGCGCCGCTAACGCATTGACAC
ACATCTCTATTACCTATAATATACAGGAAAGGAGACGCTCAAGAGCCTGG
CCAGTAATACTGAGCTTAAGGGCGAACGAGTTTTCGTCCGCGTTGATTTC
AATGGTACGTACTTGTGGACATAACCCACATGCCCTCCTATGTCTCATAC
CATTTCTCCCTACACACACAGTCCCTCTTGATAAGGAGTCCAAGGTCACG
GACGACACTCGCATCCGCGCCGCTCTCCCCACCATCAAGTTCCTGGTGGT
ACGTCCCTATTTTGATTTGCCATGTTGGAGGCGCAGCGTCCTGACTGCCT
AAACCGCCACGGCGCCCCCTTATTTTATATTCTCGTATGCGACGGTGCTG
CACATGTGCAAATTTCACAATTGGACCAGTCACTACTTCAAGGACCAAGT
ATTTCCAGCTGCAGGCACCCCTTCTCATTGCGCACAAAATCATTCACTCA
TTTTCCTCTCCCATCTCCGCTTCCCATCTTCTTACCAATCTCCCAACCGA
ACAGGAAAAAGAGGCCCGCGTCATCCTCTGTAGTCACCTCGGCCGTCCAA
AGGGCGTGACTGAATCCCTGCGCCTGGGTCCTGTCGCTGCCCGCCTCTCC
GAGCTCTTAGGCACAGACGTTGTGTACCTCAAAGACTGTGTGGGCGACGA
AATCGAGTCGTCTGTCGCTGCCCTCACTCCGGGACAAGTTGCCCTGTTGG
AGAACGTGCGTTTCTATCCGGAGGAGGAGAAGAATGCGCCGGACTTTGCT
AAGAAGCTCGCGAGGCTTGCCGATGTGTATGTCAATGACGCGTTCGGGAC
GGCGCACCGTGCGCATGCGAGTACCGAGGGGGTTGCCAAGCTCGTGAAGG
CGACGTGTGCCGGTTTTTTGATGGAAAAGGAGTTGGACTATCTGGATGGG
GCGGTCAAGAACCCGAAGAGACCTTTTGCAGCAATTGTGGGGGGATCCAA
GGTAAGCGGAGAAAGGAGGGAGGGATGAGGGATGGGAAGAATGTGTGTGA
GCCTTTTCTGACAGGCTACCACCTATCAACCTTTGCTGATCAGTCTCCTT
TCTTTCTCATCCTCTCTCCCTTGCGGTATCAGGTCTCGACCAAAATCACG
GTGGTGGAGGCCCTCATCAACAAGGTTGACAAGCTCATCATCGGCGGGGG
CATGGTCTTCACCTTCCTCAAGGCCCAGGGCCACGGGGTGAGTCCTTCTT
TCCTGCTTTCTTCTCTTCTCTCCCCCTTCGATATTTTTTAAACTCATGTG
CATTTTTTCTTCAGCTAATGTGCTTCAGGTATATATTGTGCGTGTTCTCA
ATTTGCTCACCCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTCCAGGTCGGTTCATCCCTCGTGGAAGAGGATTTCCTTGAGCTC
GCAAAGAAATTGGAAATCATCGCCAAGGAGAAAGGAGTCAAGCTCGTTCT
TCCCACCGACGTGGTGATTGCTGATAAATTTTCTGCCGATGCGGAAAGCA
AAGTGGTGCCCGCGACTGAGATCCCCGACGGGTGGATGGGCCTCGACAAC
GGCCCGGAGACGACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAAGAC
CATCATCTGGAATGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCA
CAGGCACCAGCGCGATTGCCCAGACTATGGCGGAATTGACGTCCAAGGGC
GCTACTACTATTGTGGGTGGAGGGGATTCAGTGGCTGCTGTGGAGAAGGC
AGGACTGGGGGAAAAGTTGTCGCATGTCTCGACGGGGGGTGGGGCCTCGT
TGGAGATGCTGGAAGGGAAGGTGTTGCCGGGTGTGGCGGCGATCCAGGAT
GCGAAGTGAAGGGGGGATCGGGAGGGAGGAAAGGAGGGAGGAACAAGGAG
TTTGCTTTAGGTGGGATTGAGAATGAGTGTGTGGGGGGGCTATAGTAAGA
GAACAAGGATTTCTGTTTGGAAGTCAAGGAATCTAGTATTTTGAGTTATG
GAAGAGTTTGACGGAAAGTGTTGTGACTGAAAGGCGATCAGGGTAGAAAA
CACGATCAAACGTGAAGAACTCGGACGAGATAATAAGAGCAGAAGAGAGG
CGAGAGGAAGAGGGAAGTGGAAGATGATTGTGGTGGTATTTATGCCGTCA
CAAGCGACAGACAGCAGAGAAAAAAGGGGCGGAAGAATGAAGTGACGACG
ACACGCTTTGCCTGTATTTGCTTGGCCCGTTTCTCTCCCGTAGGCACTCA
TTCGCCCACCCCGAAACGGTGTGTTTTGGGGAAGAG
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Coding sequence (CDS) from alignment at chr6:340635..343070+

>NO06G01060.1 ID=NO06G01060.1|Name=NO06G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr6:340635..343070+ (Nannochloropsis oceanica)
ATGTCTGGAAAGGAGACGCTCAAGAGCCTGGCCAGTAATACTGAGCTTAA
GGGCGAACGAGTTTTCGTCCGCGTTGATTTCAATGTCCCTCTTGATAAGG
AGTCCAAGGTCACGGACGACACTCGCATCCGCGCCGCTCTCCCCACCATC
AAGTTCCTGGTGGAAAAAGAGGCCCGCGTCATCCTCTGTAGTCACCTCGG
CCGTCCAAAGGGCGTGACTGAATCCCTGCGCCTGGGTCCTGTCGCTGCCC
GCCTCTCCGAGCTCTTAGGCACAGACGTTGTGTACCTCAAAGACTGTGTG
GGCGACGAAATCGAGTCGTCTGTCGCTGCCCTCACTCCGGGACAAGTTGC
CCTGTTGGAGAACGTGCGTTTCTATCCGGAGGAGGAGAAGAATGCGCCGG
ACTTTGCTAAGAAGCTCGCGAGGCTTGCCGATGTGTATGTCAATGACGCG
TTCGGGACGGCGCACCGTGCGCATGCGAGTACCGAGGGGGTTGCCAAGCT
CGTGAAGGCGACGTGTGCCGGTTTTTTGATGGAAAAGGAGTTGGACTATC
TGGATGGGGCGGTCAAGAACCCGAAGAGACCTTTTGCAGCAATTGTGGGG
GGATCCAAGGTCTCGACCAAAATCACGGTGGTGGAGGCCCTCATCAACAA
GGTTGACAAGCTCATCATCGGCGGGGGCATGGTCTTCACCTTCCTCAAGG
CCCAGGGCCACGGGGTCGGTTCATCCCTCGTGGAAGAGGATTTCCTTGAG
CTCGCAAAGAAATTGGAAATCATCGCCAAGGAGAAAGGAGTCAAGCTCGT
TCTTCCCACCGACGTGGTGATTGCTGATAAATTTTCTGCCGATGCGGAAA
GCAAAGTGGTGCCCGCGACTGAGATCCCCGACGGGTGGATGGGCCTCGAC
AACGGCCCGGAGACGACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAA
GACCATCATCTGGAATGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCG
CCACAGGCACCAGCGCGATTGCCCAGACTATGGCGGAATTGACGTCCAAG
GGCGCTACTACTATTGTGGGTGGAGGGGATTCAGTGGCTGCTGTGGAGAA
GGCAGGACTGGGGGAAAAGTTGTCGCATGTCTCGACGGGGGGTGGGGCCT
CGTTGGAGATGCTGGAAGGGAAGGTGTTGCCGGGTGTGGCGGCGATCCAG
GATGCGAAGTGA
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Synonyms
Publications