NO06G00980.1, NO06G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00980.1
Unique NameNO06G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2351
Alignment locationchr6:321458..323808 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:321458..323808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00980.1 vs.
Match: EWM26104.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 984.9 bits (2545), Expect = 1.200e-283
Identity = 539/682 (79.03%), Postives = 588/682 (86.22%), Query Frame = 0
Query:    1 MGKQKKLQQQQQIQQAKRVAKVTKSLTQPKIKAANKAQRKELEARM---TQRQKEEAAKRKQEVGSDVEEKENESDEEDEAEGFGGGASSSNDSQVVQDDDDEDEAEEEEEEEQVPLVPAKRKAEPSVSKAQTNKKTRDESGNAATALPETPRMEESAVSTTTSCTSSSSRSSSSSSSSNGNGTVFFANQPFDELPISDATKLALKALKFVNMTHIQSLAIPPLLTGKDVVGAAKTGSGKTLAFLVPVIELLSKVKWANRNGTGAVIISPTRELSLQIYGVLRDLCEEGKHSLTHGLVMGGANRRAEAERLVKGVGILVATPGRLLDHLQNTKGFVFRNLQVLVIDEADRILEQGFEEDMHQIIKILPKTRQTMLFSATQTKKVEDLTRLSIQGRPVFVGAHEESLVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKHKKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQETGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGSEGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRMKSTNKDKKFGSTGHAFSANNPYGKRGAGDARQFTR 680
            MGK KKL QQQ+ Q  K+VAKVTK+LTQPK+KA+NKAQRKELEARM   T+ QKEEAA R+ E   ++ E+E++ +E  E        S+S + +   + + + EAE+   +EQ   V  KRK  PS S+A+  +K  DE   + TALPETPR E           + S     S   +  +G VFFANQPF++LPISDATK ALK L+FVNMTHIQSLAIPPLL GKDVV AAKTGSGKTLAFLVPV+ELLSKVKWA RNGTGA+IISPTRELS+QIYGVLRDLC+EG H LTHGL+MGGANRRAEAERLVKGV ILVATPGRLLDHLQNTKGF+ RNLQ+LVIDEADRILEQGFEEDMHQIIK LPK RQTMLFSATQTKKVEDLTRLS+QGRPVFVGAHEE+ VATVGGLEQGYVVCPSDKRFLLLFTFLKRNK +KIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQ+ GILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARG+ GKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGR+K+T+KDK+FGSTGH FSANNPYG+R AGD+RQFTR
Sbjct:   72 MGKHKKLLQQQR-QHQKKVAKVTKTLTQPKVKASNKAQRKELEARMARWTKEQKEEAANRRTE--EELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEK--SGTALPETPRPE-----------AGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR 737          
The following BLAST results are available for this feature:
BLAST of NO06G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26104.11.200e-28379.03RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00980NO06G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00980.1NO06G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00980.1.cds1NO06G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp
AGCACCCACCATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCC
AGCAGGCAAAGAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAG
ATCAAGGCAGCAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGAC
CCAGCGCCAAAAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCG
ATGTAGAAGAAAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGA
TTTGGTGGGGGAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGA
TGACGATGAAGATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTT
TGGTGCCCGCCAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACA
AATAAGAAAACTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGA
GACGCCCCGCATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTA
GCAGCAGCAGTAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGC
ACGGTCTTCTTCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGC
CACAAAACTTGCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTC
AATCTCTTGCCATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCC
GCCAAGACTGGTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGA
GCTGTTATCTAAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCA
TTATCAGTCCGACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGT
GACTTGTGCGAGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGG
TGGGGCCAATCGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGA
TCTTGGTGGCGACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAG
GGGTTTGTGTTTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCG
TATTTTGGAGCAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTC
TGCCCAAGACACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAG
GTGGAGGATTTGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGG
GGCGCATGAGGAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGAT
ATGTGGTTTGTCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTG
AAAAGGAACAAGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAG
TGTCAAATTTCACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGG
ACATCCATGGCCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAA
TTCTGCCGACAAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCG
AGGGTTGGACATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCG
ATGACCCCAGGGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCA
GAGGGAAAGGGACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTT
TTTGAAGTACCTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTC
CGGAGAAGAAGGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAG
AAGAATTATTATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTT
GCTTGCATATGCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAAC
TGGACTTACAGGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGG
GTGGATATCAATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCAC
AAACAAGGATAAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACA
ATCCTTATGGGAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA
GGCAGATGTGTGGAAAGAAACGAAGGAGGGAATGGGGGAGACGAAAGGAA
GGGAGACGTGGATGGGGGAGCGTATATATCAGTCATGATTGATGTCACGA
GCCGAAAGTCAAGAATTCAATACGTCGCGTGGCCATTTTAATTCATGTGT
CCCTTATTTATCGGTTAATCGCGCGAATGGCAGCGTGAGAGCCTTTGGTA
CAAATGGCGGCTTGGGAGCCTTTGATATTGCTTCCCTTGCCCGCTGCATT
CATTGTCCCCTTCATTACCACCAAAAAAGAAACCTAAACTGAGTCAAGAG
C
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protein sequence of NO06G00980.1

>NO06G00980.1-protein ID=NO06G00980.1-protein|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MGKQKKLQQQQQIQQAKRVAKVTKSLTQPKIKAANKAQRKELEARMTQRQ
KEEAAKRKQEVGSDVEEKENESDEEDEAEGFGGGASSSNDSQVVQDDDDE
DEAEEEEEEEQVPLVPAKRKAEPSVSKAQTNKKTRDESGNAATALPETPR
MEESAVSTTTSCTSSSSRSSSSSSSSNGNGTVFFANQPFDELPISDATKL
ALKALKFVNMTHIQSLAIPPLLTGKDVVGAAKTGSGKTLAFLVPVIELLS
KVKWANRNGTGAVIISPTRELSLQIYGVLRDLCEEGKHSLTHGLVMGGAN
RRAEAERLVKGVGILVATPGRLLDHLQNTKGFVFRNLQVLVIDEADRILE
QGFEEDMHQIIKILPKTRQTMLFSATQTKKVEDLTRLSIQGRPVFVGAHE
ESLVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKHKKIMVFFSSCNSVKF
HAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQETGILLCTDVAARGLD
IPAVDWIIQYDPPDDPREYIHRVGRTARGSEGKGRALLFLTAEEVGFLKY
LRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAY
ASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRMKSTNKD
KKFGSTGHAFSANNPYGKRGAGDARQFTR*
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mRNA from alignment at chr6:321458..323808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp|location=Sequence derived from alignment at chr6:321458..323808- (Nannochloropsis oceanica)
AGCACCCACCATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCC AGCAGGCAAAGAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAG ATCAAGGCAGCAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGAC CCAGCGCCAAAAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCG ATGTAGAAGAAAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGA TTTGGTGGGGGAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGA TGACGATGAAGATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTT TGGTGCCCGCCAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACA AATAAGAAAACTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGA GACGCCCCGCATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTA GCAGCAGCAGTAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGC ACGGTCTTCTTCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGC CACAAAACTTGCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTC AATCTCTTGCCATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCC GCCAAGACTGGTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGA GCTGTTATCTAAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCA TTATCAGTCCGACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGT GACTTGTGCGAGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGG TGGGGCCAATCGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGA TCTTGGTGGCGACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAG GGGTTTGTGTTTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCG TATTTTGGAGCAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTC TGCCCAAGACACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAG GTGGAGGATTTGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGG GGCGCATGAGGAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGAT ATGTGGTTTGTCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTG AAAAGGAACAAGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAG TGTCAAATTTCACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGG ACATCCATGGCCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAA TTCTGCCGACAAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCG AGGGTTGGACATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCG ATGACCCCAGGGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCA GAGGGAAAGGGACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTT TTTGAAGTACCTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTC CGGAGAAGAAGGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAG AAGAATTATTATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTT GCTTGCATATGCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAAC TGGACTTACAGGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGG GTGGATATCAATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCAC AAACAAGGATAAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACA ATCCTTATGGGAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA GGCAGATGTGTGGAAAGAAACGAAGGAGGGAATGGGGGAGACGAAAGGAA GGGAGACGTGGATGGGGGAGCGTATATATCAGTCATGATTGATGTCACGA GCCGAAAGTCAAGAATTCAATACGTCGCGTGGCCATTTTAATTCATGTGT CCCTTATTTATCGGTTAATCGCGCGAATGGCAGCGTGAGAGCCTTTGGTA CAAATGGCGGCTTGGGAGCCTTTGATATTGCTTCCCTTGCCCGCTGCATT CATTGTCCCCTTCATTACCACCAAAAAAGAAACCTAAACTGAGTCAAGAG C
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Coding sequence (CDS) from alignment at chr6:321458..323808-

>NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr6:321458..323808- (Nannochloropsis oceanica)
ATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCCAGCAGGCAAA
GAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAGATCAAGGCAG
CAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGACCCAGCGCCAA
AAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCGATGTAGAAGA
AAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGATTTGGTGGGG
GAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGATGACGATGAA
GATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTTTGGTGCCCGC
CAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACAAATAAGAAAA
CTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGAGACGCCCCGC
ATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTAGCAGCAGCAG
TAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGCACGGTCTTCT
TCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGCCACAAAACTT
GCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTCAATCTCTTGC
CATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCCGCCAAGACTG
GTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGAGCTGTTATCT
AAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCATTATCAGTCC
GACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGTGACTTGTGCG
AGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGGTGGGGCCAAT
CGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGATCTTGGTGGC
GACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAGGGGTTTGTGT
TTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCGTATTTTGGAG
CAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTCTGCCCAAGAC
ACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAGGTGGAGGATT
TGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGGGGCGCATGAG
GAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGATATGTGGTTTG
TCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTGAAAAGGAACA
AGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAGTGTCAAATTT
CACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGGACATCCATGG
CCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAATTCTGCCGAC
AAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCGAGGGTTGGAC
ATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCGATGACCCCAG
GGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCAGAGGGAAAGG
GACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTTTTTGAAGTAC
CTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTCCGGAGAAGAA
GGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAGAAGAATTATT
ATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTTGCTTGCATAT
GCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAACTGGACTTACA
GGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGGGTGGATATCA
ATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCACAAACAAGGAT
AAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACAATCCTTATGG
GAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA
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Synonyms
Publications