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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:321458..323808 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00980.1 vs.
Match: EWM26104.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 984.9 bits (2545), Expect = 1.200e-283 Identity = 539/682 (79.03%), Postives = 588/682 (86.22%), Query Frame = 0
Query: 1 MGKQKKLQQQQQIQQAKRVAKVTKSLTQPKIKAANKAQRKELEARM---TQRQKEEAAKRKQEVGSDVEEKENESDEEDEAEGFGGGASSSNDSQVVQDDDDEDEAEEEEEEEQVPLVPAKRKAEPSVSKAQTNKKTRDESGNAATALPETPRMEESAVSTTTSCTSSSSRSSSSSSSSNGNGTVFFANQPFDELPISDATKLALKALKFVNMTHIQSLAIPPLLTGKDVVGAAKTGSGKTLAFLVPVIELLSKVKWANRNGTGAVIISPTRELSLQIYGVLRDLCEEGKHSLTHGLVMGGANRRAEAERLVKGVGILVATPGRLLDHLQNTKGFVFRNLQVLVIDEADRILEQGFEEDMHQIIKILPKTRQTMLFSATQTKKVEDLTRLSIQGRPVFVGAHEESLVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKHKKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQETGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGSEGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRMKSTNKDKKFGSTGHAFSANNPYGKRGAGDARQFTR 680
MGK KKL QQQ+ Q K+VAKVTK+LTQPK+KA+NKAQRKELEARM T+ QKEEAA R+ E ++ E+E++ +E E S+S + + + + + EAE+ +EQ V KRK PS S+A+ +K DE + TALPETPR E + S S + +G VFFANQPF++LPISDATK ALK L+FVNMTHIQSLAIPPLL GKDVV AAKTGSGKTLAFLVPV+ELLSKVKWA RNGTGA+IISPTRELS+QIYGVLRDLC+EG H LTHGL+MGGANRRAEAERLVKGV ILVATPGRLLDHLQNTKGF+ RNLQ+LVIDEADRILEQGFEEDMHQIIK LPK RQTMLFSATQTKKVEDLTRLS+QGRPVFVGAHEE+ VATVGGLEQGYVVCPSDKRFLLLFTFLKRNK +KIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQ+ GILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARG+ GKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGR+K+T+KDK+FGSTGH FSANNPYG+R AGD+RQFTR
Sbjct: 72 MGKHKKLLQQQR-QHQKKVAKVTKTLTQPKVKASNKAQRKELEARMARWTKEQKEEAANRRTE--EELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEK--SGTALPETPRPE-----------AGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR 737
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp AGCACCCACCATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCC AGCAGGCAAAGAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAG ATCAAGGCAGCAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGAC CCAGCGCCAAAAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCG ATGTAGAAGAAAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGA TTTGGTGGGGGAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGA TGACGATGAAGATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTT TGGTGCCCGCCAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACA AATAAGAAAACTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGA GACGCCCCGCATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTA GCAGCAGCAGTAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGC ACGGTCTTCTTCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGC CACAAAACTTGCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTC AATCTCTTGCCATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCC GCCAAGACTGGTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGA GCTGTTATCTAAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCA TTATCAGTCCGACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGT GACTTGTGCGAGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGG TGGGGCCAATCGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGA TCTTGGTGGCGACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAG GGGTTTGTGTTTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCG TATTTTGGAGCAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTC TGCCCAAGACACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAG GTGGAGGATTTGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGG GGCGCATGAGGAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGAT ATGTGGTTTGTCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTG AAAAGGAACAAGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAG TGTCAAATTTCACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGG ACATCCATGGCCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAA TTCTGCCGACAAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCG AGGGTTGGACATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCG ATGACCCCAGGGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCA GAGGGAAAGGGACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTT TTTGAAGTACCTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTC CGGAGAAGAAGGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAG AAGAATTATTATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTT GCTTGCATATGCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAAC TGGACTTACAGGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGG GTGGATATCAATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCAC AAACAAGGATAAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACA ATCCTTATGGGAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA GGCAGATGTGTGGAAAGAAACGAAGGAGGGAATGGGGGAGACGAAAGGAA GGGAGACGTGGATGGGGGAGCGTATATATCAGTCATGATTGATGTCACGA GCCGAAAGTCAAGAATTCAATACGTCGCGTGGCCATTTTAATTCATGTGT CCCTTATTTATCGGTTAATCGCGCGAATGGCAGCGTGAGAGCCTTTGGTA CAAATGGCGGCTTGGGAGCCTTTGATATTGCTTCCCTTGCCCGCTGCATT CATTGTCCCCTTCATTACCACCAAAAAAGAAACCTAAACTGAGTCAAGAG C back to topprotein sequence of NO06G00980.1 >NO06G00980.1-protein ID=NO06G00980.1-protein|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp MGKQKKLQQQQQIQQAKRVAKVTKSLTQPKIKAANKAQRKELEARMTQRQ KEEAAKRKQEVGSDVEEKENESDEEDEAEGFGGGASSSNDSQVVQDDDDE DEAEEEEEEEQVPLVPAKRKAEPSVSKAQTNKKTRDESGNAATALPETPR MEESAVSTTTSCTSSSSRSSSSSSSSNGNGTVFFANQPFDELPISDATKL ALKALKFVNMTHIQSLAIPPLLTGKDVVGAAKTGSGKTLAFLVPVIELLS KVKWANRNGTGAVIISPTRELSLQIYGVLRDLCEEGKHSLTHGLVMGGAN RRAEAERLVKGVGILVATPGRLLDHLQNTKGFVFRNLQVLVIDEADRILE QGFEEDMHQIIKILPKTRQTMLFSATQTKKVEDLTRLSIQGRPVFVGAHE ESLVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKHKKIMVFFSSCNSVKF HAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQETGILLCTDVAARGLD IPAVDWIIQYDPPDDPREYIHRVGRTARGSEGKGRALLFLTAEEVGFLKY LRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAY ASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRMKSTNKD KKFGSTGHAFSANNPYGKRGAGDARQFTR* back to topmRNA from alignment at chr6:321458..323808- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp|location=Sequence derived from alignment at chr6:321458..323808- (Nannochloropsis oceanica) AGCACCCACCATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCC
AGCAGGCAAAGAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAG
ATCAAGGCAGCAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGAC
CCAGCGCCAAAAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCG
ATGTAGAAGAAAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGA
TTTGGTGGGGGAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGA
TGACGATGAAGATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTT
TGGTGCCCGCCAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACA
AATAAGAAAACTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGA
GACGCCCCGCATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTA
GCAGCAGCAGTAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGC
ACGGTCTTCTTCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGC
CACAAAACTTGCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTC
AATCTCTTGCCATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCC
GCCAAGACTGGTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGA
GCTGTTATCTAAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCA
TTATCAGTCCGACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGT
GACTTGTGCGAGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGG
TGGGGCCAATCGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGA
TCTTGGTGGCGACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAG
GGGTTTGTGTTTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCG
TATTTTGGAGCAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTC
TGCCCAAGACACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAG
GTGGAGGATTTGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGG
GGCGCATGAGGAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGAT
ATGTGGTTTGTCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTG
AAAAGGAACAAGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAG
TGTCAAATTTCACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGG
ACATCCATGGCCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAA
TTCTGCCGACAAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCG
AGGGTTGGACATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCG
ATGACCCCAGGGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCA
GAGGGAAAGGGACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTT
TTTGAAGTACCTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTC
CGGAGAAGAAGGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAG
AAGAATTATTATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTT
GCTTGCATATGCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAAC
TGGACTTACAGGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGG
GTGGATATCAATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCAC
AAACAAGGATAAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACA
ATCCTTATGGGAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA
GGCAGATGTGTGGAAAGAAACGAAGGAGGGAATGGGGGAGACGAAAGGAA
GGGAGACGTGGATGGGGGAGCGTATATATCAGTCATGATTGATGTCACGA
GCCGAAAGTCAAGAATTCAATACGTCGCGTGGCCATTTTAATTCATGTGT
CCCTTATTTATCGGTTAATCGCGCGAATGGCAGCGTGAGAGCCTTTGGTA
CAAATGGCGGCTTGGGAGCCTTTGATATTGCTTCCCTTGCCCGCTGCATT
CATTGTCCCCTTCATTACCACCAAAAAAGAAACCTAAACTGAGTCAAGAG
C back to topCoding sequence (CDS) from alignment at chr6:321458..323808- >NO06G00980.1 ID=NO06G00980.1|Name=NO06G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr6:321458..323808- (Nannochloropsis oceanica) ATGGGGAAGCAAAAAAAGCTGCAGCAGCAGCAGCAGATCCAGCAGGCAAA GAGGGTAGCCAAAGTAACCAAGAGTCTGACCCAACCCAAGATCAAGGCAG CAAACAAGGCCCAACGCAAGGAGCTTGAAGCACGGATGACCCAGCGCCAA AAGGAGGAGGCAGCCAAGCGCAAGCAAGAGGTGGGGTCCGATGTAGAAGA AAAGGAGAATGAAAGTGATGAAGAGGACGAGGCGGAGGGATTTGGTGGGG GAGCAAGCAGCAGCAACGATAGCCAGGTGGTGCAAGACGATGACGATGAA GATGAAGCGGAAGAGGAGGAGGAAGAGGAGCAAGTCCCTTTGGTGCCCGC CAAGCGCAAGGCTGAACCGTCAGTATCGAAGGCCCAAACAAATAAGAAAA CTAGAGACGAGAGTGGAAATGCTGCGACTGCTTTGCCCGAGACGCCCCGC ATGGAGGAAAGTGCTGTTAGCACCACGACAAGCTGTACTAGCAGCAGCAG TAGAAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAACGGCACGGTCTTCT TCGCCAACCAGCCTTTCGACGAGCTCCCCATCTCGGACGCCACAAAACTT GCGCTGAAAGCGCTCAAATTCGTGAACATGACACACATTCAATCTCTTGC CATTCCCCCCCTCCTCACGGGAAAGGACGTTGTGGGTGCCGCCAAGACTG GTTCGGGCAAGACGCTCGCGTTCCTCGTGCCAGTGATTGAGCTGTTATCT AAGGTCAAGTGGGCCAATCGGAATGGGACGGGAGCGGTCATTATCAGTCC GACCCGTGAGTTGTCGTTGCAGATCTATGGAGTGTTGCGTGACTTGTGCG AGGAGGGGAAGCATTCCTTGACGCACGGTTTGGTGATGGGTGGGGCCAAT CGGAGGGCGGAGGCGGAGAGGCTAGTGAAGGGGGTGGGGATCTTGGTGGC GACCCCGGGGAGGTTGTTGGATCACTTGCAGAATACCAAGGGGTTTGTGT TTCGAAATTTGCAGGTATTGGTGATTGATGAGGCGGACCGTATTTTGGAG CAGGGTTTCGAGGAGGACATGCACCAGATCATTAAGATTCTGCCCAAGAC ACGGCAGACGATGCTGTTTAGCGCGACCCAGACCAAAAAGGTGGAGGATT TGACGCGGTTATCGATACAGGGGCGGCCGGTTTTCGTGGGGGCGCATGAG GAGAGTCTGGTGGCGACTGTAGGGGGTTTGGAGCAGGGATATGTGGTTTG TCCCTCGGATAAGCGGTTCTTATTGCTGTTCACGTTTTTGAAAAGGAACA AGCATAAGAAGATCATGGTGTTTTTTTCGTCTTGTAACAGTGTCAAATTT CACGCGGAGCTGCTGAACTACATCGATTTGCCAGTGATGGACATCCATGG CCGCCAGAAGCAACAGCGTCGAACCACCACGTTCTTCCAATTCTGCCGAC AAGAAACTGGAATTCTTCTGTGCACAGACGTCGCGGCTCGAGGGTTGGAC ATCCCTGCGGTGGACTGGATCATCCAGTACGACCCTCCCGATGACCCCAG GGAGTACATTCATCGAGTGGGGCGGACGGCGCGTGGCTCAGAGGGAAAGG GACGGGCGCTGTTATTCTTAACAGCGGAAGAGGTGGGTTTTTTGAAGTAC CTGCGTGCAGCTAAGGTTGCTTTGAATGAGTATGAGTTTCCGGAGAAGAA GGTGGCGAACGTCCAGGCGCAGTTGACGAAGCTAGTGGAGAAGAATTATT ATTTGAATAAGTCGGCGAGAGATGCGTATAGGTCTTATTTGCTTGCATAT GCCTCACATTCGCACAAGGACATTTTCAATGTGCACGAACTGGACTTACA GGCGGTGGCCAGGGCGTTTGGATTTTCGGTGCCCCCACGGGTGGATATCA ATTTGAGTAGTAAGGGTCCAAAGGGGAGAATGAAGAGCACAAACAAGGAT AAAAAATTTGGAAGTACCGGGCATGCATTCTCGGCCAACAATCCTTATGG GAAGAGGGGGGCAGGGGATGCACGGCAATTTACGCGGTAA back to top
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