NO06G00760.1, NO06G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00760.1
Unique NameNO06G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr6:264409..265743 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:264409..265743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00760.1 vs.
Match: EWM26100.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 545.4 bits (1404), Expect = 1.400e-151
Identity = 288/397 (72.54%), Postives = 324/397 (81.61%), Query Frame = 0 
Query:    1 MAASTGAFLAPSTPRRTRQHHHRMLAGR---DGKQTSRQGAILEGFAALA-GITFIATAPAVATVPIFNA-----GGQSATKKTILITGANSGIGLDASKKLAAAGHEVFVACRTLAKAQEAASAAGAAGAFECDLTSLASVQIFCDKWGTRPIDVLCLNAGVAMNTADTAPKFTLEGFEETIGVNHFGHFLIAQKLLPNLEKSALAHPRLVVTASSVHDPSTPGGNVGPGATLGDLQGLTDFLEHGKRFEMVDGSPFSADKAYKDSKLCNVLFTEEISRRLMERKSKVRCNCFSPGLIPSTGLFRSQNPLFVGLFNFFALRVLGVATTIAEGGNCLVYMVEAPELEDKSAAFLATPPGKPKDLFSIQNISKEAADADKARRFWDLTEKLLAKVTKA 389
            +A  T AF  P      +   HR+ A +   + KQ SR+  I +G AALA G+T ++T    A VP  NA     GGQ   KKTILITGANSGIGLDASKKLAAAGH+VFVACRTL+KA+EAA  + AAGAFECDL+SL+SV+   + WG RPID LCLNAGVAM+T++T P FT EGFEETIGVNHFGHFL+AQKLLPNLEKS+LAHPRLVVTASSVHDPSTPGGNVGPGATLG+L+G TDFLE GKRFEMVDG  +S DKAYKDSKL NVLFT+E+SRRL++RKSKVRC+CFSPGLIPSTGLFRSQN LFVGLFNFFA+ VLGV TTI+EGG+CLVYMVEAPELED SA FLATPPGKPKDLFS Q ISKEA D  KA+R WDL+EKLL KV KA
Sbjct:   49 LANKTFAFRVPGKFSFRKPDMHRLRAIQKPGEAKQKSRKDVITQGLAALASGLTIVSTGSVQARVPSLNASGGLTGGQG--KKTILITGANSGIGLDASKKLAAAGHDVFVACRTLSKAKEAARVSNAAGAFECDLSSLSSVERLVEAWGNRPIDALCLNAGVAMSTSETMPHFTAEGFEETIGVNHFGHFLLAQKLLPNLEKSSLAHPRLVVTASSVHDPSTPGGNVGPGATLGNLKGFTDFLEKGKRFEMVDGGSYSGDKAYKDSKLLNVLFTQEMSRRLLDRKSKVRCDCFSPGLIPSTGLFRSQNQLFVGLFNFFAVNVLGVGTTISEGGDCLVYMVEAPELEDTSAVFLATPPGKPKDLFSSQTISKEAQDTAKAQRVWDLSEKLLNKVMKA 443
The following BLAST results are available for this feature:
BLAST of NO06G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26100.11.400e-15172.54NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00760NO06G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00760.1NO06G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00760.1.cds1NO06G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00760.1.cds2NO06G00760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00760.1 ID=NO06G00760.1|Name=NO06G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGGCGGCCTCAACTGGTGCATTCTTGGCTCCCTCCACTCCTCGTCGTAC
GCGGCAGCATCATCATCGAATGCTTGCGGGCCGAGACGGCAAGCAAACCA
GCAGGCAAGGGGCGATTTTGGAGGGATTTGCGGCTCTTGCTGGCATCACG
TTCATTGCGACAGCACCTGCAGTGGCCACGGTACCTATATTTAACGCGGG
CGGTCAAAGTGCGACAAAGAAGACGATTCTCATTACTGGCGCCAACTCGG
GCATCGGGTTGGACGCGTCCAAGAAGCTGGCAGCTGCAGGGCATGAGGTT
TTTGTTGCATGTCGAACCCTGGCCAAGGCCCAAGAGGCAGCAAGCGCTGC
GGGTGCGGCGGGTGCCTTTGAATGTGATCTCACAAGCTTGGCGTCTGTGC
AAATTTTTTGCGATAAGTGGGGAACAAGGCCCATTGATGTGCTCTGTTTG
AATGCCGGGGTGGCCATGAACACCGCCGACACGGCACCCAAATTCACTTT
GGAGGGCTTTGAGGAGACCATTGGAGTAAATCATTTTGGTCATTTCCTAA
TCGCTCAAAAGCTGCTGCCGAATCTTGAAAAATCGGCCCTCGCACATCCT
CGTCTCGTTGTCACGGCAAGCTCCGTTCATGACCCCTCTACCCCGGGTGG
GAATGTAGGCCCAGGCGCAACGCTTGGCGACCTCCAGGGTCTCACCGATT
TCTTGGAGCATGGCAAACGCTTCGAGATGGTGGACGGAAGTCCCTTCTCA
GCGGACAAAGCGTATAAGGATAGTAAGCTGTGTAACGTGCTTTTTACAGA
GGAAATAAGTCGCCGCCTGATGGAGCGCAAGAGCAAGGTGCGCTGCAATT
GCTTCTCTCCCGGCTTGATCCCGTCCACCGGACTCTTTCGATCCCAAAAC
CCCTTGTTTGTTGGCCTCTTCAATTTCTTTGCGTTGAGAGTTCTCGGCGT
CGCAACTACGATTGCAGAGGGAGGAAATTGTCTTGTGTACATGGTGGAAG
CGCCCGAACTCGAAGATAAATCGGCTGCATTCTTGGCCACTCCACCGGGG
AAACCCAAGGATCTTTTCTCCATCCAAAATATTAGCAAGGAAGCTGCAGA
CGCGGACAAGGCACGGCGGTTTTGGGACCTGACCGAGAAGCTTTTGGCCA
AGGTCACAAAAGCTTAG
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protein sequence of NO06G00760.1

>NO06G00760.1-protein ID=NO06G00760.1-protein|Name=NO06G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MAASTGAFLAPSTPRRTRQHHHRMLAGRDGKQTSRQGAILEGFAALAGIT
FIATAPAVATVPIFNAGGQSATKKTILITGANSGIGLDASKKLAAAGHEV
FVACRTLAKAQEAASAAGAAGAFECDLTSLASVQIFCDKWGTRPIDVLCL
NAGVAMNTADTAPKFTLEGFEETIGVNHFGHFLIAQKLLPNLEKSALAHP
RLVVTASSVHDPSTPGGNVGPGATLGDLQGLTDFLEHGKRFEMVDGSPFS
ADKAYKDSKLCNVLFTEEISRRLMERKSKVRCNCFSPGLIPSTGLFRSQN
PLFVGLFNFFALRVLGVATTIAEGGNCLVYMVEAPELEDKSAAFLATPPG
KPKDLFSIQNISKEAADADKARRFWDLTEKLLAKVTKA*
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mRNA from alignment at chr6:264409..265743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00760.1 ID=NO06G00760.1|Name=NO06G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr6:264409..265743+ (Nannochloropsis oceanica)
ATGGCGGCCTCAACTGGTGCATTCTTGGCTCCCTCCACTCCTCGTCGTAC
GCGGCAGCATCATCATCGAATGCTTGCGGGCCGAGACGGCAAGCAAACCA
GCAGGCAAGGGGCGATTTTGGAGGGATTTGCGGCTCTTGCTGGCATCACG
TTCATTGCGACAGCACCTGCAGTGGCCACGGTACCTATATTTAACGCGGG
CGGTCAAAGTGCGACAAAGAAGACGATTCTCATTACTGGTATGTCCTTCC
ACGGGAGGTCTGTTCTACATAATAACTTCTTGTATATGAACCCCTCATAG
ACGCCCTTGTCACATCCTCTCTTACCCTCCCTCATTTGCCTCCTCTTTTA
TCATCTACGTTTTTCTATTTCAACCCATCACCTTTGACCATCTTTATCTC
TTTCAGGCGCCAACTCGGGCATCGGGTTGGACGCGTCCAAGAAGCTGGCA
GCTGCAGGGCATGAGGTTTTTGTTGCATGTCGAACCCTGGCCAAGGCCCA
AGAGGCAGCAAGCGCTGCGGGTGCGGCGGGTGCCTTTGAATGTGATCTCA
CAAGCTTGGCGTCTGTGCAAATTTTTTGCGATAAGTGGGGAACAAGGCCC
ATTGATGTGCTCTGTTTGAATGCCGGGGTGGCCATGAACACCGCCGACAC
GGCACCCAAATTCACTTTGGAGGGCTTTGAGGAGACCATTGGAGTAAATC
ATTTTGGTCATTTCCTAATCGCTCAAAAGCTGCTGCCGAATCTTGAAAAA
TCGGCCCTCGCACATCCTCGTCTCGTTGTCACGGCAAGCTCCGTTCATGA
CCCCTCTACCCCGGGTGGGAATGTAGGCCCAGGCGCAACGCTTGGCGACC
TCCAGGGTCTCACCGATTTCTTGGAGCATGGCAAACGCTTCGAGATGGTG
GACGGAAGTCCCTTCTCAGCGGACAAAGCGTATAAGGATAGTAAGCTGTG
TAACGTGCTTTTTACAGAGGAAATAAGTCGCCGCCTGATGGAGCGCAAGA
GCAAGGTGCGCTGCAATTGCTTCTCTCCCGGCTTGATCCCGTCCACCGGA
CTCTTTCGATCCCAAAACCCCTTGTTTGTTGGCCTCTTCAATTTCTTTGC
GTTGAGAGTTCTCGGCGTCGCAACTACGATTGCAGAGGGAGGAAATTGTC
TTGTGTACATGGTGGAAGCGCCCGAACTCGAAGATAAATCGGCTGCATTC
TTGGCCACTCCACCGGGGAAACCCAAGGATCTTTTCTCCATCCAAAATAT
TAGCAAGGAAGCTGCAGACGCGGACAAGGCACGGCGGTTTTGGGACCTGA
CCGAGAAGCTTTTGGCCAAGGTCACAAAAGCTTAG
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Coding sequence (CDS) from alignment at chr6:264409..265743+

>NO06G00760.1 ID=NO06G00760.1|Name=NO06G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr6:264409..265743+ (Nannochloropsis oceanica)
ATGGCGGCCTCAACTGGTGCATTCTTGGCTCCCTCCACTCCTCGTCGTAC
GCGGCAGCATCATCATCGAATGCTTGCGGGCCGAGACGGCAAGCAAACCA
GCAGGCAAGGGGCGATTTTGGAGGGATTTGCGGCTCTTGCTGGCATCACG
TTCATTGCGACAGCACCTGCAGTGGCCACGGTACCTATATTTAACGCGGG
CGGTCAAAGTGCGACAAAGAAGACGATTCTCATTACTGGCGCCAACTCGG
GCATCGGGTTGGACGCGTCCAAGAAGCTGGCAGCTGCAGGGCATGAGGTT
TTTGTTGCATGTCGAACCCTGGCCAAGGCCCAAGAGGCAGCAAGCGCTGC
GGGTGCGGCGGGTGCCTTTGAATGTGATCTCACAAGCTTGGCGTCTGTGC
AAATTTTTTGCGATAAGTGGGGAACAAGGCCCATTGATGTGCTCTGTTTG
AATGCCGGGGTGGCCATGAACACCGCCGACACGGCACCCAAATTCACTTT
GGAGGGCTTTGAGGAGACCATTGGAGTAAATCATTTTGGTCATTTCCTAA
TCGCTCAAAAGCTGCTGCCGAATCTTGAAAAATCGGCCCTCGCACATCCT
CGTCTCGTTGTCACGGCAAGCTCCGTTCATGACCCCTCTACCCCGGGTGG
GAATGTAGGCCCAGGCGCAACGCTTGGCGACCTCCAGGGTCTCACCGATT
TCTTGGAGCATGGCAAACGCTTCGAGATGGTGGACGGAAGTCCCTTCTCA
GCGGACAAAGCGTATAAGGATAGTAAGCTGTGTAACGTGCTTTTTACAGA
GGAAATAAGTCGCCGCCTGATGGAGCGCAAGAGCAAGGTGCGCTGCAATT
GCTTCTCTCCCGGCTTGATCCCGTCCACCGGACTCTTTCGATCCCAAAAC
CCCTTGTTTGTTGGCCTCTTCAATTTCTTTGCGTTGAGAGTTCTCGGCGT
CGCAACTACGATTGCAGAGGGAGGAAATTGTCTTGTGTACATGGTGGAAG
CGCCCGAACTCGAAGATAAATCGGCTGCATTCTTGGCCACTCCACCGGGG
AAACCCAAGGATCTTTTCTCCATCCAAAATATTAGCAAGGAAGCTGCAGA
CGCGGACAAGGCACGGCGGTTTTGGGACCTGACCGAGAAGCTTTTGGCCA
AGGTCACAAAAGCTTAG
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Synonyms
Publications