NO06G00600.1, NO06G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00600.1
Unique NameNO06G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length474
Alignment locationchr6:228989..229462 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:228989..229462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00600.1 vs.
Match: XP_005856358.1 (hypothetical protein NGA_2119900 [Nannochloropsis gaditana CCMP526]; EKU20014.1 hypothetical protein NGA_2119900 [Nannochloropsis gaditana CCMP526]; EWM26098.1 Protein of unknown function DUF866, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 8.700e-60
Identity = 116/156 (74.36%), Postives = 135/156 (86.54%), Query Frame = 0 
Query:    1 MPVFALQLKADLEGVSSINTTGRYCLDLSKDGEGKKGIYIDQSDEVEMADSRGTCHLQVKLPGMTKPANLVILETLSYTAGDSGNFKTVARIEARGLDVDAWQAREDFVVVSEGGKRFENADLGEGDYTEYDEEHDQAVSVLEIETKVVVVRDLKK 157
            MPVFALQLKA+LEGVS I TTGRYC+DLSKDGE K+G++ID S+ V MADSRGTCH+Q+KLPGMTKPANL ILET  YT  DSG F+TVARIEARG+DV+AW+ R+DFVVVSEGG RFE A+L +GDYTEYDEEH+QAVSVLE+ T VVV +  K+
Sbjct:    1 MPVFALQLKAELEGVSRIETTGRYCVDLSKDGECKRGVFIDMSESVAMADSRGTCHMQIKLPGMTKPANLTILETAPYTTSDSGAFQTVARIEARGVDVEAWRVRDDFVVVSEGGTRFEAANLVDGDYTEYDEEHNQAVSVLEVATNVVVGKGPKR 156
The following BLAST results are available for this feature:
BLAST of NO06G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856358.18.700e-6074.36hypothetical protein NGA_2119900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00600NO06G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00600.1NO06G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00600.1.cds1NO06G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00600.1 ID=NO06G00600.1|Name=NO06G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGCCTGTCTTCGCCCTCCAACTCAAGGCGGACCTCGAGGGCGTCTCAAG
CATCAACACCACGGGACGGTATTGCCTGGATCTTAGCAAGGACGGGGAGG
GTAAGAAGGGCATCTACATCGACCAATCTGACGAGGTTGAGATGGCCGAC
AGCCGGGGCACATGCCACCTGCAGGTAAAGCTCCCCGGTATGACGAAACC
CGCCAACCTCGTAATTCTCGAGACTCTTTCCTACACTGCCGGGGACAGCG
GCAACTTTAAGACGGTGGCACGCATCGAGGCTAGGGGCCTGGACGTGGAT
GCGTGGCAAGCGCGCGAGGATTTTGTGGTCGTGTCCGAAGGGGGTAAACG
GTTCGAGAATGCGGACTTGGGCGAGGGAGACTATACAGAATATGACGAGG
AGCACGATCAGGCTGTGTCGGTTCTTGAAATTGAGACAAAGGTCGTTGTG
GTGAGGGACCTAAAAAAAAAGTGA
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protein sequence of NO06G00600.1

>NO06G00600.1-protein ID=NO06G00600.1-protein|Name=NO06G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MPVFALQLKADLEGVSSINTTGRYCLDLSKDGEGKKGIYIDQSDEVEMAD
SRGTCHLQVKLPGMTKPANLVILETLSYTAGDSGNFKTVARIEARGLDVD
AWQAREDFVVVSEGGKRFENADLGEGDYTEYDEEHDQAVSVLEIETKVVV
VRDLKKK*
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mRNA from alignment at chr6:228989..229462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00600.1 ID=NO06G00600.1|Name=NO06G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=474bp|location=Sequence derived from alignment at chr6:228989..229462- (Nannochloropsis oceanica)
ATGCCTGTCTTCGCCCTCCAACTCAAGGCGGACCTCGAGGGCGTCTCAAG
CATCAACACCACGGGACGGTATTGCCTGGATCTTAGCAAGGACGGGGAGG
GTAAGAAGGGCATCTACATCGACCAATCTGACGAGGTTGAGATGGCCGAC
AGCCGGGGCACATGCCACCTGCAGGTAAAGCTCCCCGGTATGACGAAACC
CGCCAACCTCGTAATTCTCGAGACTCTTTCCTACACTGCCGGGGACAGCG
GCAACTTTAAGACGGTGGCACGCATCGAGGCTAGGGGCCTGGACGTGGAT
GCGTGGCAAGCGCGCGAGGATTTTGTGGTCGTGTCCGAAGGGGGTAAACG
GTTCGAGAATGCGGACTTGGGCGAGGGAGACTATACAGAATATGACGAGG
AGCACGATCAGGCTGTGTCGGTTCTTGAAATTGAGACAAAGGTCGTTGTG
GTGAGGGACCTAAAAAAAAAGTGA
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Coding sequence (CDS) from alignment at chr6:228989..229462-

>NO06G00600.1 ID=NO06G00600.1|Name=NO06G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr6:228989..229462- (Nannochloropsis oceanica)
ATGCCTGTCTTCGCCCTCCAACTCAAGGCGGACCTCGAGGGCGTCTCAAG
CATCAACACCACGGGACGGTATTGCCTGGATCTTAGCAAGGACGGGGAGG
GTAAGAAGGGCATCTACATCGACCAATCTGACGAGGTTGAGATGGCCGAC
AGCCGGGGCACATGCCACCTGCAGGTAAAGCTCCCCGGTATGACGAAACC
CGCCAACCTCGTAATTCTCGAGACTCTTTCCTACACTGCCGGGGACAGCG
GCAACTTTAAGACGGTGGCACGCATCGAGGCTAGGGGCCTGGACGTGGAT
GCGTGGCAAGCGCGCGAGGATTTTGTGGTCGTGTCCGAAGGGGGTAAACG
GTTCGAGAATGCGGACTTGGGCGAGGGAGACTATACAGAATATGACGAGG
AGCACGATCAGGCTGTGTCGGTTCTTGAAATTGAGACAAAGGTCGTTGTG
GTGAGGGACCTAAAAAAAAAGTGA
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Synonyms
Publications