NO06G00540.1, NO06G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00540.1
Unique NameNO06G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr6:217767..220123 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:217767..220123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00540.1 vs.
Match: EWM26127.1 (kinesin-like protein kif13a [Nannochloropsis gaditana])

HSP 1 Score: 540.4 bits (1391), Expect = 6.400e-150
Identity = 320/514 (62.26%), Postives = 369/514 (71.79%), Query Frame = 0 
Query:   10 GDEWVTVAIRVKALDPLPDGELDSFCVAPLQSKAKNTGLSIDGQKSGANAFHFDSVHWSLGKG--------------NGGMDAQESTQEAMYEDLGAPVVTSVLAGFNACIFAYGQTGSGKTYTMMGNYDNIASADRGLIPRISEAIFRKAAAGGTSGSARNGKMITTVESTAAGSFEITHAFDVTYVELYLERVHDLL-ALPHSGSSCCSSSSSSGGRADSPSPSSPMSSPGQTALRVREHPKLGPYVDGATSTRVSSYEEVMALLETGNRNRMVAATELNATSSRSHAIFTIQYTRTKREVSPVSLRRGVGKGDGEGSAPADAAVSLQQTSKLSLIDLAGSENAGKSGTKGERLKEGGSINKSLLTLGLVIKSLAMTKQHQQREGWGSPGGGRGGGGEPRRLVPYRDSALTFLLKDSLGGNSRTTMLATIRPGLAFYEETLRTLRYADRAKSIVNQAVVNEDPITRKIRSLHDQIDVLAGRLAEAQKKEEEKDQEIQVLSDQLRRALAGGGR 509
            GD+ VTVA+RVK +D LP+G  DS CV P ++ A NTGL IDGQ+   N F FDS+HWSLG G               G +   ES+Q +++EDLG PVV+SVLAG+N C+FAYGQTGSGKTYTMMG YD+IAS  RGLIPRISEA+F   A                VES A   FE+THAFDVTYVELYLERVHDLL A   S ++  S  S++ G   SP  +SP+SSPG  ALRVREHPK GPYVDGA STRV+SYEEV+ALLE GN NRMVAAT+LNATSSRSHA+FTIQYT+ K+EV                    +  V  QQTSKLSLIDLAGSE+AGKSGTKGERLKEGGSINKSLLTLGLVIK+LA T +H+     GSP  G G     + +VPYRDS LTFLLKDSLGGNSRTTMLATIRPGLAFYEE+L TLRYADRAKSIVNQAVVNEDP+T+KIRS+ DQI+ L  +LA AQ++E  KD E+ V+   L  +L GG R
Sbjct:   17 GDDHVTVAVRVKGVDALPEGP-DSLCVFPQENMA-NTGLYIDGQRGAVNNFQFDSIHWSLGGGVGPNGSSSSASHGSGGSIVVPESSQLSVFEDLGTPVVSSVLAGYNTCLFAYGQTGSGKTYTMMGKYDSIASEQRGLIPRISEALFAATATSKEVQKDPESGTTFGVESAAVEKFEVTHAFDVTYVELYLERVHDLLGAQASSPNTTTSGVSTNAGGIASPGTASPVSSPG-AALRVREHPKYGPYVDGAVSTRVNSYEEVLALLEIGNANRMVAATDLNATSSRSHAVFTIQYTKIKQEVD-----------------TPNPVVLSQQTSKLSLIDLAGSESAGKSGTKGERLKEGGSINKSLLTLGLVIKALA-TARHR----GGSPVLGNG-----KPVVPYRDSVLTFLLKDSLGGNSRTTMLATIRPGLAFYEESLSTLRYADRAKSIVNQAVVNEDPLTKKIRSMQDQIEFLTLQLASAQEREAAKDTELFVMRQAL--SLEGGER 498
The following BLAST results are available for this feature:
BLAST of NO06G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26127.16.400e-15062.26kinesin-like protein kif13a [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00540NO06G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00540.1NO06G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00540.1.cds1NO06G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00540.1.cds2NO06G00540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00540.1.cds3NO06G00540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00540.1.cds4NO06G00540.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00540.1 ID=NO06G00540.1|Name=NO06G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ATGGGGGACTCCAATTTATCGGCTGGCGGCGACGAGTGGGTCACAGTCGC
CATCCGTGTCAAGGCCCTGGACCCCCTCCCAGACGGAGAGCTCGACAGTT
TCTGCGTCGCTCCTCTTCAGAGCAAGGCGAAAAATACCGGCCTATCCATT
GACGGTCAAAAAAGCGGAGCCAATGCTTTCCACTTTGACTCGGTGCACTG
GTCACTCGGCAAGGGAAACGGTGGAATGGACGCCCAGGAATCAACCCAAG
AGGCCATGTATGAGGACCTCGGTGCCCCGGTTGTTACCTCTGTTCTCGCC
GGCTTCAACGCTTGTATCTTCGCGTACGGTCAGACGGGCAGTGGCAAGAC
CTACACCATGATGGGGAATTACGACAACATCGCCAGTGCAGACCGCGGAC
TTATCCCTCGAATCAGCGAAGCCATCTTTAGAAAAGCTGCCGCCGGGGGT
ACGTCCGGGTCCGCGCGTAACGGCAAAATGATAACGACGGTCGAGTCCAC
GGCAGCGGGAAGCTTCGAAATCACCCATGCATTCGATGTTACCTATGTGG
AATTGTATCTGGAGCGGGTGCATGACTTGCTCGCTCTCCCACACAGCGGA
AGCAGCTGCTGCAGCAGCAGCAGTAGCTCGGGAGGGAGGGCAGACTCCCC
CTCTCCATCCTCGCCCATGTCGTCGCCGGGGCAGACGGCGCTGCGGGTGA
GGGAACATCCAAAGCTGGGGCCGTATGTAGACGGAGCGACGAGCACACGG
GTGTCGTCTTATGAGGAGGTGATGGCGCTGTTAGAGACGGGGAATCGGAA
CAGGATGGTGGCGGCCACGGAGCTGAACGCGACGAGCTCAAGGAGTCACG
CAATATTCACCATCCAGTACACCAGGACCAAGAGGGAGGTGTCCCCCGTG
TCTCTAAGACGAGGAGTGGGGAAAGGGGATGGCGAGGGCAGCGCCCCTGC
AGATGCGGCGGTGAGTCTGCAGCAGACTTCGAAGTTGAGCTTGATCGACC
TGGCGGGCAGTGAGAATGCGGGCAAGTCGGGGACGAAGGGGGAGAGGCTG
AAGGAGGGTGGGAGCATCAACAAGAGTCTGCTCACCCTTGGCTTGGTAAT
CAAGTCGCTGGCCATGACGAAACAGCACCAGCAGCGAGAAGGATGGGGAA
GCCCGGGGGGAGGAAGGGGGGGAGGGGGGGAACCCCGGAGGCTGGTGCCG
TACCGGGACTCAGCTCTGACGTTTTTATTGAAGGATTCACTAGGCGGGAA
CAGCCGGACAACGATGCTGGCCACCATCCGACCCGGCCTGGCTTTCTATG
AAGAAACTCTCCGCACGCTGCGCTACGCTGATCGCGCCAAGAGCATCGTC
AACCAGGCCGTGGTGAATGAAGACCCTATTACCAGGAAGATCCGATCACT
CCATGACCAGATTGACGTCTTGGCCGGACGACTGGCCGAGGCCCAGAAGA
AGGAAGAGGAGAAGGATCAAGAGATACAGGTGCTGTCGGATCAGCTGCGG
CGGGCATTGGCAGGAGGAGGGAGAGGAGGGGGGGAAGGAAGGAGGGGAGG
AAGGAGGCACAGGATAGTGCAACGGGAGCAGGGGAGGAGGACGAAGGGGA
GAAAGGAGACGAGGAAAAGAAGCGGGGACAAGGAGATTCGCAGGAAGACG
CTAGATTAA
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protein sequence of NO06G00540.1

>NO06G00540.1-protein ID=NO06G00540.1-protein|Name=NO06G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MGDSNLSAGGDEWVTVAIRVKALDPLPDGELDSFCVAPLQSKAKNTGLSI
DGQKSGANAFHFDSVHWSLGKGNGGMDAQESTQEAMYEDLGAPVVTSVLA
GFNACIFAYGQTGSGKTYTMMGNYDNIASADRGLIPRISEAIFRKAAAGG
TSGSARNGKMITTVESTAAGSFEITHAFDVTYVELYLERVHDLLALPHSG
SSCCSSSSSSGGRADSPSPSSPMSSPGQTALRVREHPKLGPYVDGATSTR
VSSYEEVMALLETGNRNRMVAATELNATSSRSHAIFTIQYTRTKREVSPV
SLRRGVGKGDGEGSAPADAAVSLQQTSKLSLIDLAGSENAGKSGTKGERL
KEGGSINKSLLTLGLVIKSLAMTKQHQQREGWGSPGGGRGGGGEPRRLVP
YRDSALTFLLKDSLGGNSRTTMLATIRPGLAFYEETLRTLRYADRAKSIV
NQAVVNEDPITRKIRSLHDQIDVLAGRLAEAQKKEEEKDQEIQVLSDQLR
RALAGGGRGGGEGRRGGRRHRIVQREQGRRTKGRKETRKRSGDKEIRRKT
LD*
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mRNA from alignment at chr6:217767..220123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00540.1 ID=NO06G00540.1|Name=NO06G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at chr6:217767..220123+ (Nannochloropsis oceanica)
ATGGGGGACTCCAATTTATCGGCTGGCGGCGACGAGTGGGTCACAGGTCA
GTAGAACCCTTGTGAATATTTGTGACAGGATAGGATGGGCAGCTTTTCTT
CCAATCGTCCTCTCAATTTGTCCCAGTCACTTGTGTTTTTTCCTGCCGTT
ATATCATCCTTGGCCTTACCCCCTCCTCCTTCCCTTTCGCGCTTTCACCG
CATGTCTACGGTGCACTGATTTTATCTCTTCTTCTCTTTACACCTGCCCC
CCCCATTGTACTTGCTATGCCATTACATATCACAATTTCTACACTACCTA
CTCCCTCCAGTCGCCATCCGTGTCAAGGCCCTGGACCCCCTCCCAGACGG
AGAGCTCGACAGTTTCTGCGTCGCTCCTCTTCAGAGCAAGGCGAAAAATA
CCGGCCTATCCATTGACGGTCAAAAAAGCGGAGCCAATGCTTTCCACTTT
GACTCGGTGCACTGGTCACTCGGCAAGGGAAACGGTGGAATGGACGCCCA
GGAATCAACCCAAGAGGCCATGTATGAGGACCTCGGTGCCCCGGTTGTTA
CCTCTGTTCTCGCCGGCTTCAACGCTTGTATCTTCGCGTACGGTCAGACG
GGCAGGTGGGTAGATTGGAGCCTCGAGGAGGGGAGGGAGTGCAAGAGCGA
CGTTGTAGAAAGTGTGGGAATGCGTCCCGACCTTTGCCTCATTCCTCCCC
TCGTCTTCCCCCCTCCCTCACATGCAGTGGCAAGACCTACACCATGATGG
GGAATTACGACAACATCGCCAGTGCAGACCGCGGACTTATCCCTCGAATC
AGCGAAGCCATCTTTAGAAAAGCTGCCGCCGGGGGTACGTCCGGGTCCGC
GCGTAACGGCAAAATGATAACGACGGTCGAGTCCACGGCAGCGGGAAGCT
TCGAAATCACCCATGCATTCGATGTTACCTATGTGGAATTGTATCTGGAG
CGGGTGCATGACTTGCTCGCTCTCCCACACAGCGGAAGCAGCTGCTGCAG
CAGCAGCAGTAGCTCGGGAGGGAGGGCAGACTCCCCCTCTCCATCCTCGC
CCATGTCGTCGCCGGGGCAGACGGCGCTGCGGGTGAGGGAACATCCAAAG
CTGGGGCCGTATGTAGACGGAGCGACGAGCACACGGGTGTCGTCTTATGA
GGAGGTGATGGCGCTGTTAGAGACGGGGAATCGGAACAGGATGGTGGCGG
CCACGGAGCTGAACGCGACGAGCTCAAGGAGTCACGCAATATTCACCATC
CAGTACACCAGGACCAAGAGGGAGGTGTCCCCCGTGTCTCTAAGACGAGG
AGTGGGGAAAGGGGATGGCGAGGGCAGCGCCCCTGCAGATGCGGCGGTGA
GTCTGCAGCAGACTTCGAAGTTGAGCTTGATCGACCTGGCGGGCAGTGAG
AATGCGGGCAAGTCGGGGACGAAGGGGGAGAGGCTGAAGGAGGGTGGGAG
CATCAACAAGAGTCTGCTCACCCTTGGCTTGGTAATCAAGTCGCTGGCCA
TGACGAAACAGCACCAGCAGCGAGAAGGATGGGGAAGCCCGGGGGGAGGA
AGGGGGGGAGGGGGGGAACCCCGGAGGCTGGTGCCGTACCGGGACTCAGC
TCTGACGTTTTTATTGAAGGATTCACTAGGCGGGAACAGCCGGACAACGA
TGCTGGTAGGTAGGATTGGGGGAAGGAGAGTGAGAGGGAGGGAGGGAAGA
AGGCATACTTATGTGTTTCGCTTGCTTAGTGTGTCGAGTGATCCTGTTTG
TGTGCATGCATGTCTGTACGCCGTGGATCTTGCTCCCTTCCGTCCCCATC
GCCGGCGATGACGATCGGCCCGGGTCCCCTTCACATTCAAGGGGACATTT
CGCATCCTGCGCTACCCTCATCGTCTCAAGAGCATGGCAATGACCGCAGG
TTTAAACTTATACCCCCTCCTCCCACTTTCCCTCCCTTCCTCCCTCCCTC
CCTGCCCCCCCCGTAAGGCCACCATCCGACCCGGCCTGGCTTTCTATGAA
GAAACTCTCCGCACGCTGCGCTACGCTGATCGCGCCAAGAGCATCGTCAA
CCAGGCCGTGGTGAATGAAGACCCTATTACCAGGAAGATCCGATCACTCC
ATGACCAGATTGACGTCTTGGCCGGACGACTGGCCGAGGCCCAGAAGAAG
GAAGAGGAGAAGGATCAAGAGATACAGGTGCTGTCGGATCAGCTGCGGCG
GGCATTGGCAGGAGGAGGGAGAGGAGGGGGGGAAGGAAGGAGGGGAGGAA
GGAGGCACAGGATAGTGCAACGGGAGCAGGGGAGGAGGACGAAGGGGAGA
AAGGAGACGAGGAAAAGAAGCGGGGACAAGGAGATTCGCAGGAAGACGCT
AGATTAA
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Coding sequence (CDS) from alignment at chr6:217767..220123+

>NO06G00540.1 ID=NO06G00540.1|Name=NO06G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr6:217767..220123+ (Nannochloropsis oceanica)
ATGGGGGACTCCAATTTATCGGCTGGCGGCGACGAGTGGGTCACAGTCGC
CATCCGTGTCAAGGCCCTGGACCCCCTCCCAGACGGAGAGCTCGACAGTT
TCTGCGTCGCTCCTCTTCAGAGCAAGGCGAAAAATACCGGCCTATCCATT
GACGGTCAAAAAAGCGGAGCCAATGCTTTCCACTTTGACTCGGTGCACTG
GTCACTCGGCAAGGGAAACGGTGGAATGGACGCCCAGGAATCAACCCAAG
AGGCCATGTATGAGGACCTCGGTGCCCCGGTTGTTACCTCTGTTCTCGCC
GGCTTCAACGCTTGTATCTTCGCGTACGGTCAGACGGGCAGTGGCAAGAC
CTACACCATGATGGGGAATTACGACAACATCGCCAGTGCAGACCGCGGAC
TTATCCCTCGAATCAGCGAAGCCATCTTTAGAAAAGCTGCCGCCGGGGGT
ACGTCCGGGTCCGCGCGTAACGGCAAAATGATAACGACGGTCGAGTCCAC
GGCAGCGGGAAGCTTCGAAATCACCCATGCATTCGATGTTACCTATGTGG
AATTGTATCTGGAGCGGGTGCATGACTTGCTCGCTCTCCCACACAGCGGA
AGCAGCTGCTGCAGCAGCAGCAGTAGCTCGGGAGGGAGGGCAGACTCCCC
CTCTCCATCCTCGCCCATGTCGTCGCCGGGGCAGACGGCGCTGCGGGTGA
GGGAACATCCAAAGCTGGGGCCGTATGTAGACGGAGCGACGAGCACACGG
GTGTCGTCTTATGAGGAGGTGATGGCGCTGTTAGAGACGGGGAATCGGAA
CAGGATGGTGGCGGCCACGGAGCTGAACGCGACGAGCTCAAGGAGTCACG
CAATATTCACCATCCAGTACACCAGGACCAAGAGGGAGGTGTCCCCCGTG
TCTCTAAGACGAGGAGTGGGGAAAGGGGATGGCGAGGGCAGCGCCCCTGC
AGATGCGGCGGTGAGTCTGCAGCAGACTTCGAAGTTGAGCTTGATCGACC
TGGCGGGCAGTGAGAATGCGGGCAAGTCGGGGACGAAGGGGGAGAGGCTG
AAGGAGGGTGGGAGCATCAACAAGAGTCTGCTCACCCTTGGCTTGGTAAT
CAAGTCGCTGGCCATGACGAAACAGCACCAGCAGCGAGAAGGATGGGGAA
GCCCGGGGGGAGGAAGGGGGGGAGGGGGGGAACCCCGGAGGCTGGTGCCG
TACCGGGACTCAGCTCTGACGTTTTTATTGAAGGATTCACTAGGCGGGAA
CAGCCGGACAACGATGCTGGCCACCATCCGACCCGGCCTGGCTTTCTATG
AAGAAACTCTCCGCACGCTGCGCTACGCTGATCGCGCCAAGAGCATCGTC
AACCAGGCCGTGGTGAATGAAGACCCTATTACCAGGAAGATCCGATCACT
CCATGACCAGATTGACGTCTTGGCCGGACGACTGGCCGAGGCCCAGAAGA
AGGAAGAGGAGAAGGATCAAGAGATACAGGTGCTGTCGGATCAGCTGCGG
CGGGCATTGGCAGGAGGAGGGAGAGGAGGGGGGGAAGGAAGGAGGGGAGG
AAGGAGGCACAGGATAGTGCAACGGGAGCAGGGGAGGAGGACGAAGGGGA
GAAAGGAGACGAGGAAAAGAAGCGGGGACAAGGAGATTCGCAGGAAGACG
CTAGATTAA
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Synonyms
Publications