NO06G00230.2, NO06G00230.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00230.2
Unique NameNO06G00230.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1124
Alignment locationchr6:93873..96288 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:93873..96288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00230.2 vs.
Match: XP_024582048.1 (Alpha-tubulin folding cofactor B [Plasmopara halstedii]; CEG45679.1 Alpha-tubulin folding cofactor B [Plasmopara halstedii])

HSP 1 Score: 259.6 bits (662), Expect = 1.200e-65
Identity = 138/263 (52.47%), Postives = 176/263 (66.92%), Query Frame = 0 
Query:   13 QDAQALRDYLVAGDAVRYDLLPKGVVMVGVTHSNLGMSMPDIRLDLHTSIDSVKEKLYTHCGTKPQHQRLFLKRDSGDSTMLPLSDDSKKLGYYSVESGMCIHVVDDDPYSLSKHGGLEDVSKVEKYTMSEEDYDKRKGTLREWVKEQKAKDEKWKAPWTKKKDEEGREDGREGGREEPPPGPESMEGWKVGQRCECQPGGRRGTIMYMGQVEAAGAGCWVGVQLDEPVGRNDGSTKDGQRYFTCQEKFGTFVRPRNITVGDF 276
            QD +ALR Y+ A D  +YD +P+ VV + +THSNL + M DIRLDLH++I  ++ KLY H G+KP    L + R  G S    L DD+K LG+Y+VE+G+ +H+VD DPYSLS+ GGLEDVS V+KY MSEEDY+KR+ T+R + KEQ AKD  WK P T         D          PGPES+   KVG RCE QPGGR G + Y+G+V     G WVGVQ DEPVG++DGS K G+ YF CQ+K+G FVRP N+T G+F
Sbjct:    3 QDMRALRQYVTAMDGHQYDNVPETVVCLLITHSNLKLQMVDIRLDLHSTIGELRHKLYQHTGSKPDAMELLIMRSDG-SVHAHLEDDNKMLGFYNVENGLRLHIVDKDPYSLSRRGGLEDVSLVKKYEMSEEDYNKREKTVRAYKKEQLAKDPNWK-PKTMMNVSHTAAD------PITRPGPESVANMKVGDRCEVQPGGRLGQVQYLGEVSEIAPGYWVGVQFDEPVGKSDGSVK-GKAYFRCQQKYGGFVRPHNVTNGEF 256
The following BLAST results are available for this feature:
BLAST of NO06G00230.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024582048.11.200e-6552.47Alpha-tubulin folding cofactor B [Plasmopara halst... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00230NO06G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00230.2NO06G00230.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00230.2.cds1NO06G00230.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds2NO06G00230.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds3NO06G00230.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds4NO06G00230.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds5NO06G00230.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds6NO06G00230.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds7NO06G00230.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds8NO06G00230.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds9NO06G00230.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00230.2.cds10NO06G00230.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00230.2 ID=NO06G00230.2|Name=NO06G00230.2|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
ACATACAGGCACATTTAAAGTACCAGGAAAGGATGCATCCCGGCGTGGCT
CCTCCGAGGAGGCTGCACCAGGACGCACAGGCCCTCCGCGACTACCTCGT
GGCAGGTGACGCCGTGCGGTATGATTTGCTCCCTAAGGGCGTGGTGATGG
TGGGTGTCACGCATTCCAACCTTGGCATGTCCATGCCCGACATTCGCCTC
GATCTGCACACGTCGATCGATAGTGTCAAGGAAAAGCTCTACACCCACTG
CGGGACCAAGCCTCAACATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCG
ACAGCACCATGCTCCCCCTCAGCGATGACTCCAAAAAGTTGGGGTATTAC
TCCGTAGAAAGCGGCATGTGCATCCACGTCGTCGATGACGACCCATATTC
CCTCTCCAAGCACGGTGGACTGGAAGACGTTAGCAAGGTGGAGAAATACA
CCATGTCGGAGGAAGACTACGACAAACGCAAGGGCACCCTCAGGGAATGG
GTTAAGGAGCAGAAAGCAAAGGACGAGAAGTGGAAGGCGCCCTGGACCAA
GAAAAAGGACGAGGAGGGGAGGGAGGACGGGAGGGAGGGCGGGAGGGAGG
AGCCTCCCCCCGGGCCGGAGTCGATGGAGGGATGGAAAGTGGGCCAGCGG
TGTGAATGTCAGCCAGGCGGGCGACGGGGCACAATCATGTACATGGGCCA
AGTCGAAGCAGCAGGAGCAGGCTGCTGGGTCGGCGTCCAGCTGGACGAGC
CTGTCGGACGCAACGATGGGAGCACCAAAGACGGTCAGCGCTACTTCACC
TGTCAGGAAAAGTTTGGGACTTTCGTGCGACCGAGAAACATCACTGTGGG
TGATTTTGCTGAGAGAGGGCTAGAGGAGGAGGAGGAGGAGGTGGAGGCGG
CGGAGGAGGAAGAGGAGGAGATATAAAGAGAGAGTGAAGGAGGGAGGATA
GGGTGGAGAAAGAGGAGGAGGAGGGGAAGGAAGAGGGAGGAAGAAGGGAA
GCAGGGAGGACGCGCAGGGTGTAACCATGCGCCGAAAAGGAGGATGGAAG
GAAGGACGGGAAGGAAGAAAGGAAGGGAGGAGGCAGGGAGGGGAGGAGGG
GAATAGCAGATAAACGATCCTTAT
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protein sequence of NO06G00230.2

>NO06G00230.2-protein ID=NO06G00230.2-protein|Name=NO06G00230.2|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MHPGVAPPRRLHQDAQALRDYLVAGDAVRYDLLPKGVVMVGVTHSNLGMS
MPDIRLDLHTSIDSVKEKLYTHCGTKPQHQRLFLKRDSGDSTMLPLSDDS
KKLGYYSVESGMCIHVVDDDPYSLSKHGGLEDVSKVEKYTMSEEDYDKRK
GTLREWVKEQKAKDEKWKAPWTKKKDEEGREDGREGGREEPPPGPESMEG
WKVGQRCECQPGGRRGTIMYMGQVEAAGAGCWVGVQLDEPVGRNDGSTKD
GQRYFTCQEKFGTFVRPRNITVGDFAERGLEEEEEEVEAAEEEEEEI*
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mRNA from alignment at chr6:93873..96288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00230.2 ID=NO06G00230.2|Name=NO06G00230.2|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp|location=Sequence derived from alignment at chr6:93873..96288+ (Nannochloropsis oceanica)
ACATACAGGCACATTTAAAGTACCAGGAAAGGATGCATCCCGGCGTGGCT
CCTCCGAGGAGGCTGCACCAGGACGCACAGGTAGGCGAAACGTCTAATGA
CCATGCAGTGCTGAAAAAGATGGAGGGCAGGGCATTTGTCGCGTCTGGTG
GTCGAGCGAAAGAGAAGGAGTAAGATTATTGGGAGCATGAAAAAACAAGC
ACGTTATCGTGGGCATGCATTCTGCCCCGTTGCCTTTAGAGCCCTTTTCT
CGTTCTCAACCCTTCCTTCTTCTTATTTATTTTATCCTTTTCCTCTCTTC
CCTATCCAGGCCCTCCGCGACTACCTCGTGGCAGGTGACGCCGTGCGGTA
TGATTTGCTCCCTAAGGGCGTGGTGATGGTGGGTGTCACGCATTCCAACC
TTGGCATGTCCATGCCCGACATTCGCCTCGATCTGCACACGTCGGTACGT
CCCTCCTTCCCTCCTCCCTTCCTTCCCTCCCTTTCTCCCTGGATCTCATT
ACCTCTCCGCATTCCCCCCTCTAGATCGATAGTGTCAAGGAAAAGCTCTA
CACCCACTGCGGGACCAAGCCTCAACATCAGCGGCTCTTTCTCAAGCGGG
ACTCGGGCGACAGCACCATGCTCCCCCTCAGTACGTATCCCCTCCTTCCC
TCCCTCCCTCCCTCCTTCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTTT
CCCCTTCCTTTCCTCCTCCCTCCCCCCAGTTCATCTCATCTCTTCATCAT
ATTATCTCTTCTTACAGGCGATGACTCCAAAAAGTTGGGGTATTACTCCG
TAGAAAGCGGCATGTGCATCCACGTCGTCGATGACGTACGTCCCTCCTTC
CCTCCCTCCCTCCCTCCCTCCCTTGCTCCCTCCCTCCCTCCTTTTTTGTT
CACCCTCTCCCTCCTTCCCTCCCTCCCTCCTTTTATTAATAAACAGGACC
CATATTCCCTCTCCAAGCACGGTGGACTGGAAGACGTTAGCAAGGCATGT
GGAAAGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTCGCA
TCTCATCGCGTCAATCTCCCTCCCCACCTCTTCCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCCTCCCTCAGGTGGAGAAATACACCATGTCGGA
GGAAGACTACGACAAACGCAAGGGCACCCTCAGGGAATGGGTTAAGGAGC
AGAAAGCAAAGGACGAGAAGTGGAAGGTAGGCCCTCCCCTCCCTCCCTCC
CTCCCTCCCTCCTGCCCTCCTCCTCTTGCGCCCTCCCTCCTACCCTCCCC
CTCTTGCGCCCTCCCTCCGTTCCCTCCTTTCTCCTGAGAGGGGCTCTGTG
CCTCCATACCGTAATTGTCCTCCATACCGTAATTCCCCTTTCTTCCCTCC
CTTCCCCCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGGCG
CCCTGGACCAAGAAAAAGGACGAGGAGGGGAGGGAGGACGGGAGGGAGGG
CGGGAGGGAGGAGCCTCCCCCCGGGCCGGAGTCGATGGAGGGATGGAAAG
TGGGCCAGCGGTGTGAATGTCAGCCAGGTAGAGGGGGAGGGAGGGAGGGA
GGAAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGAGCATATATCAATCC
ATCGTTTCCTCGTACATTATGTCTTGACTGCTTTGTAAATTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCAGGCGGGCGACGGGGCACAATCATGTACA
TGGGCCAAGTCGAAGCAGCAGGAGCAGGCTGCTGGGTAAGCCCTCCCTCC
CTCCCTCCCTCCTTCTTATTCCCTTCACCAACTCCCTCTCTCCCTCCCTC
CTTCCCTCCCTCCCTCAGGTCGGCGTCCAGCTGGACGAGCCTGTCGGACG
CAACGATGGGAGCACCAAAGACGGTCAGCGCTACTTCACCTGTCAGGCAC
GTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTTTCTAAACATCTTCAACTCAGCGTGGCGGGTCTTTTTCTGGCTCACAC
TTCTTCTCTACCTCCCTCCCTCCCTCCCTCCCTCTGTCACTTCCTCAGGA
AAAGTTTGGGACTTTCGTGCGACCGAGAAACATCACTGTGGGTGATTTTG
CTGAGAGAGGGCTAGAGGAGGAGGAGGAGGAGGTGGAGGCGGCGGAGGAG
GAAGAGGAGGAGATATAAAGAGAGAGTGAAGGAGGGAGGATAGGGTGGAG
AAAGAGGAGGAGGAGGGGAAGGAAGAGGGAGGAAGAAGGGAAGCAGGGAG
GACGCGCAGGGTGTAACCATGCGCCGAAAAGGAGGATGGAAGGAAGGACG
GGAAGGAAGAAAGGAAGGGAGGAGGCAGGGAGGGGAGGAGGGGAATAGCA
GATAAACGATCCTTAT
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Coding sequence (CDS) from alignment at chr6:93873..96288+

>NO06G00230.2 ID=NO06G00230.2|Name=NO06G00230.2|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr6:93873..96288+ (Nannochloropsis oceanica)
ATGCATCCCGGCGTGGCTCCTCCGAGGAGGCTGCACCAGGACGCACAGGC
CCTCCGCGACTACCTCGTGGCAGGTGACGCCGTGCGGTATGATTTGCTCC
CTAAGGGCGTGGTGATGGTGGGTGTCACGCATTCCAACCTTGGCATGTCC
ATGCCCGACATTCGCCTCGATCTGCACACGTCGATCGATAGTGTCAAGGA
AAAGCTCTACACCCACTGCGGGACCAAGCCTCAACATCAGCGGCTCTTTC
TCAAGCGGGACTCGGGCGACAGCACCATGCTCCCCCTCAGCGATGACTCC
AAAAAGTTGGGGTATTACTCCGTAGAAAGCGGCATGTGCATCCACGTCGT
CGATGACGACCCATATTCCCTCTCCAAGCACGGTGGACTGGAAGACGTTA
GCAAGGTGGAGAAATACACCATGTCGGAGGAAGACTACGACAAACGCAAG
GGCACCCTCAGGGAATGGGTTAAGGAGCAGAAAGCAAAGGACGAGAAGTG
GAAGGCGCCCTGGACCAAGAAAAAGGACGAGGAGGGGAGGGAGGACGGGA
GGGAGGGCGGGAGGGAGGAGCCTCCCCCCGGGCCGGAGTCGATGGAGGGA
TGGAAAGTGGGCCAGCGGTGTGAATGTCAGCCAGGCGGGCGACGGGGCAC
AATCATGTACATGGGCCAAGTCGAAGCAGCAGGAGCAGGCTGCTGGGTCG
GCGTCCAGCTGGACGAGCCTGTCGGACGCAACGATGGGAGCACCAAAGAC
GGTCAGCGCTACTTCACCTGTCAGGAAAAGTTTGGGACTTTCGTGCGACC
GAGAAACATCACTGTGGGTGATTTTGCTGAGAGAGGGCTAGAGGAGGAGG
AGGAGGAGGTGGAGGCGGCGGAGGAGGAAGAGGAGGAGATATAA
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Synonyms
Publications