NO06G00150.1, NO06G00150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00150.1
Unique Name	NO06G00150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1526
Alignment location	chr6:64375..68587 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:64375..68587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G00150.1 vs.
Match: EWM29052.1 (Peptidase aspartic [Nannochloropsis gaditana])

HSP 1 Score: 133.7 bits (335), Expect = 1.600e-27
Identity = 112/327 (34.25%), Postives = 156/327 (47.71%), Query Frame = 0

Query:  105 LEALNPQIWAYFASLEFEGN-QVIDVLVDTGSAGMGVPIQMPVNWTESEEAPFVSLDLGKAGAETVLCKDP-RCRGACDAPGKDHF------------CSPKGGSCRTNDEGTDICIFSWLYGDGSSASGSLVTS-KVGMAGLEVRS-TFGAIDTASTNFFEAPHGGGIMGMSFGGYSL---------------------CDAEFSCFPPLFDSFVQDL------NLLNMFAICHDGTSG----GEMILGGGNPNMRAGELKLAPMLPPFGFYSVGIDNVTLGDVQVLPPGNTQGSRLRAGS----YQGKGKISAVVDTGNSALYMP 381
            L+A  P + AYFA L F  + Q IDVLVDTGS  + +P  +    +   +     L++  AG + V C D  RC G C     + F            C P GG C   + G+++C+F   Y DGS ASG +VT+  V  +G+ ++  TFGAI +AS  FFEAP GGGIMGM++ G ++                     CD E  C  PL D+ +          + ++FAI    TS     GE  LG  +     GEL+ A M  P+G Y VG+    LG V+  P  +       AGS    +QG   + A++DTG + LY P
Sbjct:   61 LQAFVPGLPAYFARLSFGNDAQAIDVLVDTGSFDLLIPSDLCTACSHVSQR----LNVASAGVDFVHCGDAMRCHGQCMPDVLNSFGSTSQTIPPQLYCGPHGGIC---EAGSNLCLFDDNYADGSYASGVVVTAPSVNFSGVTLKDVTFGAIASASDTFFEAPQGGGIMGMAYRGSAVSTRANARGNLDQPVTKKDVVGCDGETPCMVPLLDALIAQQEQGVGGQVRDIFAIYGHPTSPVMLLGESSLGIESQEYYEGELQYARMEAPYGLYMVGV--AGLGVVEA-PGMDVPKGVAEAGSTFMLHQGNAGL-AIIDTGATGLYFP 376

The following BLAST results are available for this feature:

BLAST of NO06G00150.1 vs.

BLAST of NO06G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29052.1	1.600e-27	34.25	Peptidase aspartic [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G00150	NO06G00150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00150.1	NO06G00150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00150.1.cds1	NO06G00150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds2	NO06G00150.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds3	NO06G00150.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds4	NO06G00150.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds5	NO06G00150.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds6	NO06G00150.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds7	NO06G00150.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds8	NO06G00150.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds9	NO06G00150.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds10	NO06G00150.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds11	NO06G00150.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds12	NO06G00150.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds13	NO06G00150.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00150.1.cds14	NO06G00150.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:64375..68587-
coding sequence from alignment at chr6:64375..68587-

mRNA sequence

>NO06G00150.1 ID=NO06G00150.1|Name=NO06G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp
ACAGCGCCCCTCCGAGCACAATCATGCCAATAATGAGACAAAGAGAACTT
GGCCTTGTGGTGGCTGCGCTTGGCAGTGCCGCCTGGACTGGCACGGCGCA
AGTCTCCATGCCCTTAGCCTACAAAGCAAAACCAATCGCAACAGCAGCAC
TTGCGCAGTCGTCGTCCACCCCTGTGCCAGAACGTGGCTTCTTAAATTTC
CTGACCATTGGTGCTGAGGAAGGGGCAACCGGGACGGAGGGTCTTCATAT
GATTGTGGAGAAAGAGCTCGACTACGTGGCATATGTGGATCCGTCCACAA
ACCGCGTCAAGGCTGCCGCTGCTTCGATCGAGAGACTGGAGGCTCTTAAT
CCTCAGATTTGGGCTTACTTTGCGTCGTTGGAGTTCGAGGGGAACCAGGT
AATCGACGTCCTCGTCGACACAGGCTCGGCGGGCATGGGCGTTCCTATCC
AAATGCCGGTTAATTGGACTGAATCGGAGGAGGCACCATTTGTAAGCTTG
GATCTCGGAAAAGCGGGCGCCGAAACGGTGCTGTGCAAGGACCCCCGGTG
CAGGGGTGCTTGCGACGCACCGGGGAAAGATCATTTCTGTTCTCCCAAGG
GCGGATCGTGTCGGACGAATGATGAAGGCACGGACATCTGCATTTTCTCC
TGGCTGTACGGAGACGGCTCCAGCGCCAGCGGCTCCCTTGTGACATCCAA
AGTCGGAATGGCTGGCCTTGAGGTTCGAAGCACCTTTGGCGCCATCGACA
CGGCCTCGACAAACTTTTTCGAGGCTCCTCATGGAGGGGGCATCATGGGC
ATGTCATTTGGGGGCTACTCCCTGTGTGACGCTGAGTTCAGCTGCTTTCC
CCCCCTCTTTGACTCGTTCGTGCAGGACCTGAACCTCCTCAACATGTTTG
CCATCTGCCACGACGGCACCAGCGGGGGAGAGATGATTTTGGGGGGAGGT
AATCCGAACATGCGTGCGGGAGAGCTCAAGCTTGCTCCGATGCTCCCTCC
CTTCGGCTTCTACTCGGTCGGGATCGACAACGTTACACTCGGCGACGTCC
AAGTCCTCCCCCCGGGCAACACACAAGGCTCCCGTCTACGTGCAGGATCG
TATCAAGGGAAGGGGAAAATCAGCGCGGTGGTCGATACGGGCAACAGTGC
GCTGTACATGCCGGAGGCCCTGTTTGACATCTTTCGGAGCTCCCTCCTCT
CCTCCCTCAGCCGGTGGCCCGCGCTGTCGGACAAGGAAAAAAACCTCTTC
ACAGGTTACGCGGTCTACATCCCAACTGATGTCCTCTCGCAACTACCGCC
CCTCACCCTGTCTCTAGAGGGAGGTGCTGTCCTCTCCATTCCCGCCGAGC
AATACACCGTGGAGTTTCGGATTCCCGAAGCGCCCGTGCCCATCCGTGCT
TTGAAGATCATCAAGAGCAACCGCTTTGTCCTTGGACAGACAGTGCTGGG
TCACACTTACCTGGAGATTGACCGCGCTAAGAAGACAGTGGGTTTTGCGC
CGAGCAAGCCCGGGTGCCCCGCATAG

protein sequence of NO06G00150.1

>NO06G00150.1-protein ID=NO06G00150.1-protein|Name=NO06G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MPIMRQRELGLVVAALGSAAWTGTAQVSMPLAYKAKPIATAALAQSSSTP
VPERGFLNFLTIGAEEGATGTEGLHMIVEKELDYVAYVDPSTNRVKAAAA
SIERLEALNPQIWAYFASLEFEGNQVIDVLVDTGSAGMGVPIQMPVNWTE
SEEAPFVSLDLGKAGAETVLCKDPRCRGACDAPGKDHFCSPKGGSCRTND
EGTDICIFSWLYGDGSSASGSLVTSKVGMAGLEVRSTFGAIDTASTNFFE
APHGGGIMGMSFGGYSLCDAEFSCFPPLFDSFVQDLNLLNMFAICHDGTS
GGEMILGGGNPNMRAGELKLAPMLPPFGFYSVGIDNVTLGDVQVLPPGNT
QGSRLRAGSYQGKGKISAVVDTGNSALYMPEALFDIFRSSLLSSLSRWPA
LSDKEKNLFTGYAVYIPTDVLSQLPPLTLSLEGGAVLSIPAEQYTVEFRI
PEAPVPIRALKIIKSNRFVLGQTVLGHTYLEIDRAKKTVGFAPSKPGCPA
*

mRNA from alignment at chr6:64375..68587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G00150.1 ID=NO06G00150.1|Name=NO06G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=4213bp|location=Sequence derived from alignment at chr6:64375..68587- (Nannochloropsis oceanica)
ACAGCGCCCCTCCGAGCACAATCATGCCAATAATGAGACAAAGAGAACTT
GGCCTTGTGGTGGCTGCGCTTGGCAGTGCCGCCTGGACTGGCACGGCGCA
AGTCTCCATGCCCTTAGCCTACAAAGCAAAACCAATCGCAACAGCAGCAC
TTGCGCAGTCGTCGTCCACCCCTGTGCCAGAACGTGGCTTCTTAAATTTC
CTGACCATTGGTGCTGAGGAAGGGGCAACCGGGACGGAGGGTCTTCATAT
GATTGTGGAGAAAGAGGTGGGTATCTTATGAGGGGAGGCAGTGGGTATGT
TCCCTCTAGACTTATCCTTACCCTCCCTCCCTCCCTAGCTCGACTACGTG
GCATATGTGGATCCGTCCACAAACCGCGTCAAGGCTGCCGCTGCTTCGAT
CGAGAGACTGGAGGCTCTTAATCCTCAGATTTGGGCTTACTTTGCGTCGT
TGGAGTTCGAGGGGAACCAGGTGGGGAGGGTGGGAGGGAGGAAGGGACAG
AGAGAGCGGGAGGGTGTCTCAGAGAGGTTGAAAAAGGAGTACAGGGTATG
TTACCGGCTTCATGGGACGTAGGGAGAGAAAGAAATAATGTGGAATCGGG
CGAATGAGGGGGGAGAGGGGGGAAAGGGGTCAAACAGACTAACCCCCCCT
CCCTCCCTCCCTTTCCACAGGTAATCGACGTCCTCGTCGACACAGGCTCG
GCGGGCATGGGCGTTCCTATCCAAATGCCGGTTAATTGGACTGAATCGGA
GGAGGCACCATTTGTAAGCTTGGATCTCGGAAAAGCGGGCGCCGAAACGG
TGCTGTGCAAGGACCCCCGGTGCAGGTAGGGAGGGAGGGAGGGAGGAGGG
AGGGATTGTTGTATAGGACAACAAGATGGATATGGGAGAGACGGGAGAAA
GGAAGGAAGGAAGGAGGGAGGGAGAGAGAAGGAAGATGAGAATTCGTCCT
CCACCCCTGCACCACAATCTTCACCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTAGGGGTGCTTGCGACGCACCGGGGAAAGATCATTTCTGTTCTCC
CAAGGGCGGATCGTGTCGGACGAATGATGAAGGTAGGGAGGAAGGGAGGG
AGGGAGGGAGGGATGAAGGAAGGGAGGGAGGGAGGGAGGGATGGGAGGGA
TGGGAGGGAGGGAGGGAGGGATGGGAGGGAGGGAGGGATAGAGGGAGGGA
AGGAAGATGGCACAGAATAGACACACGCTTCCTTTTTGTTCTGACATGCT
TCCATCCACCTACACTCTCTGTCGCACACACATTTATACGCATATGCAAA
CGAGTACGACAAACACCCACCCACACAGCCATGCACCCTCACACATGTAT
ACGAGTACGACAAACACACGCGCACACCCACACCTTCTCACTCATGTATA
CGAGTACGACAAACACACTCTCTCACTCCCACACACCCTTACACCCTCAC
TCATGTATACGAGTACGACAAACACACTCACTCATTCCCTCCTATCCATC
CACCTAGGCACGGACATCTGCATTTTCTCCTGGCTGTACGGAGACGGCTC
CAGCGCCAGCGGCTCCCTTGTGACATCCAAAGTCGGAATGGCTGGCCTTG
AGGTACGCCCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCCTTTTC
TCACTCCCTTTTTCCCTTCCTCCCTCCCTCTACCTCCCTTCCTCCCTTCC
TCCCGTACCCCCCCACTCCCTTCCTTTCTTTCTCTTCCACATCCACCTTC
ATCCTCTACCAACACCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTTCG
AAGCACCTTTGGCGCCATCGACACGGCCTCGACAAACTTTTTCGAGGCTC
CTCATGGAGGGGGCATCATGGGTGAGGGAGGGAGGGAGGGAGGGAGGGAC
GGAGGGAGGGAGGGAGGGCCGAAGATACGGCTATCTGCGTGTTGTAGAGT
TTTTCGGCTTTCTCTTACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTCCAGGCATGTCATTTGGGGGCTACTCCCTGTGTGACGC
TGAGTTCAGCTGCTTTCCCCCCCTCTTTGACTCGTTCGTGCAGGACCTGA
ACCTCCTCAACATGTTTGCCATCTGCCACGACGGCACCAGCGGGGGAGAG
ATGATTTTGGGGGGAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGTTTTCACTCCCCTCTACCCATATCGTCGAC
TCGTGGGACATTTCCAACAGATACAAACCGTCCTTCCCTCCCTCCCGCCC
GCTCTACTGCTTCCTTTCCTCCTGCCCAGCATCCCGACCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCTCCCACAGGTAA
TCCGAACATGCGTGCGGGAGAGCTCAAGCTTGCTCCGATGCTCCCTCCCT
TCGGCTTCTACTCGGTCGGGATCGACAACGTTACACTCGGCGACGTCCAA
GTCCTCCCCCCGGGCAACACACAAGGTTCCTCCCTGCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTACTTGGCAT
TGTGGCCCACGTTCATCTTTTCGCCGTTCAACCCCCTCTCATTCCCTCCC
CCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCCTGGACTTGC
CTACTGCACGCTTTCCCACTTCAAGAACACAATTCCAACTGTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCTCCCGTCTACGT
GCAGGATCGTATCAAGGGAAGGGGAAAATCAGCGCGGTGGTCGATACGGG
CAACAGTGCGCTGTACATGCCGGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGATTTTGTTCGACCAAGAGAAGGGACGATCTACTCATTGA
CTGATTGATTGATTGATTGATTTATTCATTGACTGATTGATTGATTGAGC
CATTCAGAAGAAAGGAGGCAGGAAGGGAGATGTGACGCCCCTCAACACTG
ACACCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCC
CTCCCTTTTGCTTCCAGAGGCCCTGTTTGACATCTTTCGGAGCTCCCTCC
TCTCCTCCCTCAGCCGGTGGCCCGCGCTGTCGGACAAGGAAAAAAACCTC
TTCACAGGTTACGCGGTCTACATCCCAACTGATGTCCTCTCGGTGCGTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCATCATCCAACCTACGC
CTGTTTTACTTTATTGCAACACCGTATCTGACCCCTTCCTTCCCTCCCTC
CCTCCCTCCCTCCCCCCCTCCCTCCCTCTCAGCAACTACCGCCCCTCACC
CTGTCTCTAGAGGGAGGTGCTGTCCTCTCCATTCCCGCCGAGCAATACAC
CGTGGTAGGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTG
CTTGAATTCACTCACTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCTCTCTCTCCCTCCCTCCCTCCCAGGAGTTTCGGATTCCCGAAGCG
CCCGTGCCCATCCGTGCTTTGAAGGTAAGGAGGGAGGGAGGGAGGGAGGA
AGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAAGTGAGTGAAT
TCAAGCAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGCAGCAGGCG
GCCCATCGTTTCTTCCTCACATTCCTCTCGTCTGACCCCCATCATCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTCTCCCTCCTCTCTTTTCAGATCATCAAGAGCAACCGCTTTGTCCTTG
GACAGACAGTGCTGGGTCACACTTACCTGGAGGTGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGGGCGGACAAGAGTGTGCATCTAAGTTGTGTCGAGA
GGGGAGGGAAATTTGCAAAGGAGGGAGGGAAGGAGGGAGGAAGGGAGGGA
GGGAGGGATGGCAAACAGAGGCTTTTTGGAGAAGAAGGAGGAGGAGGAAA
CATCCACATACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGATTGACCGCGCTAAGAAGACAGTGGGTTTTGCGCCGAGCAAGCCCGG
GTGCCCCGCATAG

Coding sequence (CDS) from alignment at chr6:64375..68587-

>NO06G00150.1 ID=NO06G00150.1|Name=NO06G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr6:64375..68587- (Nannochloropsis oceanica)
ATGCCAATAATGAGACAAAGAGAACTTGGCCTTGTGGTGGCTGCGCTTGG
CAGTGCCGCCTGGACTGGCACGGCGCAAGTCTCCATGCCCTTAGCCTACA
AAGCAAAACCAATCGCAACAGCAGCACTTGCGCAGTCGTCGTCCACCCCT
GTGCCAGAACGTGGCTTCTTAAATTTCCTGACCATTGGTGCTGAGGAAGG
GGCAACCGGGACGGAGGGTCTTCATATGATTGTGGAGAAAGAGCTCGACT
ACGTGGCATATGTGGATCCGTCCACAAACCGCGTCAAGGCTGCCGCTGCT
TCGATCGAGAGACTGGAGGCTCTTAATCCTCAGATTTGGGCTTACTTTGC
GTCGTTGGAGTTCGAGGGGAACCAGGTAATCGACGTCCTCGTCGACACAG
GCTCGGCGGGCATGGGCGTTCCTATCCAAATGCCGGTTAATTGGACTGAA
TCGGAGGAGGCACCATTTGTAAGCTTGGATCTCGGAAAAGCGGGCGCCGA
AACGGTGCTGTGCAAGGACCCCCGGTGCAGGGGTGCTTGCGACGCACCGG
GGAAAGATCATTTCTGTTCTCCCAAGGGCGGATCGTGTCGGACGAATGAT
GAAGGCACGGACATCTGCATTTTCTCCTGGCTGTACGGAGACGGCTCCAG
CGCCAGCGGCTCCCTTGTGACATCCAAAGTCGGAATGGCTGGCCTTGAGG
TTCGAAGCACCTTTGGCGCCATCGACACGGCCTCGACAAACTTTTTCGAG
GCTCCTCATGGAGGGGGCATCATGGGCATGTCATTTGGGGGCTACTCCCT
GTGTGACGCTGAGTTCAGCTGCTTTCCCCCCCTCTTTGACTCGTTCGTGC
AGGACCTGAACCTCCTCAACATGTTTGCCATCTGCCACGACGGCACCAGC
GGGGGAGAGATGATTTTGGGGGGAGGTAATCCGAACATGCGTGCGGGAGA
GCTCAAGCTTGCTCCGATGCTCCCTCCCTTCGGCTTCTACTCGGTCGGGA
TCGACAACGTTACACTCGGCGACGTCCAAGTCCTCCCCCCGGGCAACACA
CAAGGCTCCCGTCTACGTGCAGGATCGTATCAAGGGAAGGGGAAAATCAG
CGCGGTGGTCGATACGGGCAACAGTGCGCTGTACATGCCGGAGGCCCTGT
TTGACATCTTTCGGAGCTCCCTCCTCTCCTCCCTCAGCCGGTGGCCCGCG
CTGTCGGACAAGGAAAAAAACCTCTTCACAGGTTACGCGGTCTACATCCC
AACTGATGTCCTCTCGCAACTACCGCCCCTCACCCTGTCTCTAGAGGGAG
GTGCTGTCCTCTCCATTCCCGCCGAGCAATACACCGTGGAGTTTCGGATT
CCCGAAGCGCCCGTGCCCATCCGTGCTTTGAAGATCATCAAGAGCAACCG
CTTTGTCCTTGGACAGACAGTGCTGGGTCACACTTACCTGGAGATTGACC
GCGCTAAGAAGACAGTGGGTTTTGCGCCGAGCAAGCCCGGGTGCCCCGCA
TAG

Synonyms

Publications