NO05G05380.1, NO05G05380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05380.1
Unique Name	NO05G05380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1677
Alignment location	chr5:1441935..1445117 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1441935..1445117 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G05380.1 vs.
Match: EWM27853.1 (Protein of unknown function DUF179, partial [Nannochloropsis gaditana])

HSP 1 Score: 383.6 bits (984), Expect = 6.900e-103
Identity = 200/267 (74.91%), Postives = 223/267 (83.52%), Query Frame = 0

Query:   51 AARRHQPQISTLLVVLAMLLLVTIAPAFLLPSPSISSTLTTTRMSNGQGQGDFDAPESDDGTSPPPAPSDMLARIMQGAQQRRASSGEGGDWALYSSALRGGVVLVANPAVFLNRPPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGMGENEGIFMLHAYPELQKTTQVTNDGLCFGGNYTAAQELVLGKKASSARFKFFIQQTVWAPGELKKEIE 318
            A + H      LL++L++LLL  IA AFLLP+PS S +    R+ +G+ QGDFD  +SDDG  PP APSDMLARIMQGAQQRRASSGEGGDWA+YSSALRGGVVLVANPAVFL  PPA LASRF LP DLSL L    GG   QA+DNLANILPVVLLLGSG+GGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGG GE++GIFM+H YPEL++ TQVTNDGL FGGNYTAAQELV  + ASS+RFKFFIQQT+WAPGELK+EIE
Sbjct:    2 AVQWHTDGQQRLLLLLSLLLLARIAHAFLLPAPSHSPS----RLGSGEDQGDFDIVDSDDGNDPPAAPSDMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIE 264

The following BLAST results are available for this feature:

BLAST of NO05G05380.1 vs.

BLAST of NO05G05380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27853.1	6.900e-103	74.91	Protein of unknown function DUF179, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G05380	NO05G05380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05380.1	NO05G05380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05380.1.cds1	NO05G05380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds2	NO05G05380.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds3	NO05G05380.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds4	NO05G05380.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds5	NO05G05380.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds6	NO05G05380.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds7	NO05G05380.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds8	NO05G05380.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05380.1.cds9	NO05G05380.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1441935..1445117-
coding sequence from alignment at chr5:1441935..1445117-

mRNA sequence

>NO05G05380.1 ID=NO05G05380.1|Name=NO05G05380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
AGGCTGCACTCGCCGAAATTTGCTCCCCAACCTCTCGATTATGTGATGAT
GACTGAGTCGAAGTGCCCCCGTTTCAAGCCGCCCCTTGGTCGCTTTCACG
ACTTACCAGTACTCGCGGTATAGATTGTAGCATATGAGCAGCGCGGAGGC
CGTGCTTGCACCGTCCCAAAGGCTTGGCATTGGCACAAAAAGGACTACTT
TATTCTCATCGTCATCTCCTTCCCAACCACCCTTCCCTTTTCACTTTCAT
AGAGACAGGGACGCAGTCATGGCAGCAGCAGCGGCTGCACGGCGGCATCA
GCCGCAGATATCAACGCTTCTCGTCGTGTTGGCCATGCTCCTCCTCGTCA
CTATAGCGCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTG
ACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCC
CGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGG
CGCGCATCATGCAGGGAGCTCAACAACGACGGGCATCTTCGGGCGAAGGC
GGCGACTGGGCGTTGTATTCGTCGGCGCTGCGAGGCGGTGTGGTCCTGGT
TGCCAACCCAGCCGTTTTTCTCAACCGCCCGCCCGCGGAGCTAGCCTCCC
GCTTCTTCCTCCCTCAAGACCTCTCCCTCGAACTGATGGACGGCCTGGGC
GGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATCTTGCCCGTGGT
TCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCTGGTGCTCAATA
GGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACTCGTCGGGATTC
AAGATCCAGCCTGTCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTT
CATGCTCCACGCATACCCAGAGCTGCAGAAGACGACTCAGGTCACGAATG
ACGGGCTGTGCTTCGGAGGCAACTATACGGCGGCCCAAGAGCTGGTGCTC
GGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCGT
CTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGAGGACAATGTCTGGTATC
CCGCCCAGGTCTCCAAGGACGTGATCCTGAAGAACCGCGGCCGGGAAGGG
CCCAAGATGGCCAAGCCTTTGTGGACCGAGATTCTGGAGCTTATGGGCGG
GACCTTTTTGGAGATCAAGAAGGAGTTGTATGAGAACGAGGGCAGGCGGT
GGAGGGAGGGAGGGACGGAGGGAGAGATATAAGAAGGGAGCGAGGGGGGA
AGGGAAGGGGCTTCCAAAGAATGAGATATTGCCGACTTGTGTATGGAAAG
ATAAATAGGGGGGAGGGAGGGAGGGAAGAAGGGAGGATATGCGGTGATAA
GGTTAAAATAGTATAAGTATAGGCTTTGTTCAATGATCCAGGCACGAAAC
AAGTCGGGAAAAAGGAAACGAATGAATGACGACTGACTGACCCGCCTTCC
GAGTGTGGCAATATACACCACGCCCACCAATCCGCTGCTGCTGCTGCTGC
TACTACTACTTCTCGTGCTCTCCCCTCTTCAGTAGATATCGTTGTCGAAT
CTATTTCTTTTTCCCCTCCCGCACTCCTTTCGAACTACTTCCTCCCCTTC
TTCCCCTTCTTTTTCTTCGGATTCCCG

protein sequence of NO05G05380.1

>NO05G05380.1-protein ID=NO05G05380.1-protein|Name=NO05G05380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MSSAEAVLAPSQRLGIGTKRTTLFSSSSPSQPPFPFHFHRDRDAVMAAAA
AARRHQPQISTLLVVLAMLLLVTIAPAFLLPSPSISSTLTTTRMSNGQGQ
GDFDAPESDDGTSPPPAPSDMLARIMQGAQQRRASSGEGGDWALYSSALR
GGVVLVANPAVFLNRPPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLA
NILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGMG
ENEGIFMLHAYPELQKTTQVTNDGLCFGGNYTAAQELVLGKKASSARFKF
FIQQTVWAPGELKKEIEDNVWYPAQVSKDVILKNRGREGPKMAKPLWTEI
LELMGGTFLEIKKELYENEGRRWREGGTEGEI*

mRNA from alignment at chr5:1441935..1445117-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G05380.1 ID=NO05G05380.1|Name=NO05G05380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp|location=Sequence derived from alignment at chr5:1441935..1445117- (Nannochloropsis oceanica)
AGGCTGCACTCGCCGAAATTTGCTCCCCAACCTCTCGATTATGTGATGAT
GACTGAGTCGAAGTGCCCCCGTTTCAAGCCGCCCCTTGGTCGCTTTCACG
ACTTACCAGTACTCGCGGTATAGATTGTAGCATATGAGCAGCGCGGAGGC
CGTGCTTGCACCGTCCCAAAGGCTTGGCATTGGCACAAAAAGGACTACTT
TATTCTCATCGTCATCTCCTTCCCAACCACCCTTCCCTTTTCACTTTCAT
AGAGACAGGGACGCAGTCATGGCAGCAGCAGCGGCTGCACGGCGGCATCA
GCCGCAGATATCAACGCTTCTCGTCGTGTTGGCCATGCTCCTCCTCGTCA
CTATAGCGCCCGCCTTTCTCCTCCCTTCCCCATCTATTTCTTCCACGTTG
ACAACGACACGGATGTCCAACGGTCAGGGTCAAGGAGACTTTGACGCCCC
CGAAAGCGACGACGGCACCAGCCCACCTCCCGCTCCATCAGACATGCTGG
CGCGCATCATGCAGGTAACGTTTGTTGCTCGGTACATTTTTTCCCCGATG
ATGACCGTATTGCGGTCCCTCCCTACTTTCTACCCACGCTCCCTCGTTTG
ACGCTCGCCTTCTCTCTTATGTTCATCCTTCGTCACTCCAGGGAGCTCAA
CAACGACGGGCATCTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTC
GGCGCTGCGAGGTACATATTGGACGAGGGGAAGGGAGGGGAGGGTAGGGG
AGATAGGAGTAGGAATGATGACGGAAAGGAGGAGAGCGAGAAAAGTAAGT
ATCACCTGCACCTTTACATAATAGTCACTTTCACCTTTGTCTATCCATTG
AAACACAGGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAACC
GCCCGCCCGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTCC
CTCGAACTGATGGACGGCCTGGGCGGTGCGTTATCTTTGTATATACACAT
GCAGTTTATATCTATACATGTACTGTTATGATCCCCGACAAGTCCTCATA
AATATTCATATTTACCATTGTTTGTATCTATACATATGTGCCCTGCTTAG
TCTCTGACTCTTCCTTCACGTGCTTGTCTTCCTCTTTCGTGCATGCCACT
AATCACACGTCCTTCCATCCCTCCCTCCCTCCCTCGTTCCTCTTCTATCT
CTCCTCCTCCAGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCCAATATC
TTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAGCGGCCT
GGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACGTGGACT
CGTCGGGTAGGGAGGGAGGGGAGGAGGGAGGGGAGAAGGGAGGAAAGGAG
AATAGGAAGGAGGGAGGGTAGGGAAGAGTAGAAGGGAATAGAGAGGAGGT
TGTAGAGAGTTCTCCACTATCGCGTCTCATCCCGCCCCACACGAGGGTCA
CGGCCACAAGCGACGAAATGTGCCTGCGCTAGCCACTCACGCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCCACCATATGCCCAGGATTCAAGATCCAGCCTG
TCCACCTAGGGGGCATGGGCGAGAACGAGGGCATCTTCATGCTCCACGCA
TACCCAGAGCTGCAGAAGACGACTCAGGTCACGAATGACGGGCTGTGCTT
CGGAGGTAGGGAAGAAAGGCGAGAGGGGAGGGAGGACGGGACAGTCTCGT
ATGGGAGGTATTCTTTTAATGCGTGCCACTGATCAATCATTCCTTTCGTC
ATTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCTC
CCTCTTCAGGCAACTATACGGCGGCCCAAGAGCTGGTGCTCGGGAAGAAA
GCCTCCTCTGCGCGCTTCAAATTCTTCATCCAGCAGACCGTCTGGGCCCC
GGGCGAGCTCAAGAAGGAGATTGAGGTAGGCCACACTCTCCCTCCTTTCC
CTCCCTCCCGCCCTCTCTCTCCCCCTCCTTCCCCCTGGTGATATGCCTCT
CTCCTCAGTCCCCTTGCCTCTCTTCCCTCCCTCCCTCCCTCCCTCTCCCT
CCACCACAGGACAATGTCTGGTATCCCGCCCAGGTAAAAACAGAAGGGAG
GAAGAGAGGAAGAGAGGGAAGGAGGGAGAGGGAGGGAGGGAGGGAGGGAG
GGGGGAATACGAGCGCGGGCACATCCAAGACTGCAGGAATTTTCACCTCG
TCCGCCCCCCACCCTCCCCCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
CCTTTACAGGTCTCCAAGGACGTGATCCTGAAGAACCGCGGCCGGGAAGG
GCCCAAGATGGCCAAGCCTTTGTGGACCGAGATTCTGGAGCTTATGGGCG
GGTAGGCACAGCCCTCCCTCCCTCTCTCTCTCCCTCCGTCTCTCCCTTCT
CGACTTTTCAAATGTATCCTCCTATCACCCCTTGCCTCTCTGCGCCTCGA
CTCACCACATCTCTTCTTTCTTTTCTCCTCTTTTTCTCCCTTCCTTCCTC
CTGCAGGACCTTTTTGGAGATCAAGAAGGAGTTGTATGAGAACGAGGGCA
GGCGGTGGAGGGAGGGAGGGACGGAGGGAGAGATATAAGAAGGGAGCGAG
GGGGGAAGGGAAGGGGCTTCCAAAGAATGAGATATTGCCGACTTGTGTAT
GGAAAGATAAATAGGGGGGAGGGAGGGAGGGAAGAAGGGAGGATATGCGG
TGATAAGGTTAAAATAGTATAAGTATAGGCTTTGTTCAATGATCCAGGCA
CGAAACAAGTCGGGAAAAAGGAAACGAATGAATGACGACTGACTGACCCG
CCTTCCGAGTGTGGCAATATACACCACGCCCACCAATCCGCTGCTGCTGC
TGCTGCTACTACTACTTCTCGTGCTCTCCCCTCTTCAGTAGATATCGTTG
TCGAATCTATTTCTTTTTCCCCTCCCGCACTCCTTTCGAACTACTTCCTC
CCCTTCTTCCCCTTCTTTTTCTTCGGATTCCCG

Coding sequence (CDS) from alignment at chr5:1441935..1445117-

>NO05G05380.1 ID=NO05G05380.1|Name=NO05G05380.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr5:1441935..1445117- (Nannochloropsis oceanica)
ATGAGCAGCGCGGAGGCCGTGCTTGCACCGTCCCAAAGGCTTGGCATTGG
CACAAAAAGGACTACTTTATTCTCATCGTCATCTCCTTCCCAACCACCCT
TCCCTTTTCACTTTCATAGAGACAGGGACGCAGTCATGGCAGCAGCAGCG
GCTGCACGGCGGCATCAGCCGCAGATATCAACGCTTCTCGTCGTGTTGGC
CATGCTCCTCCTCGTCACTATAGCGCCCGCCTTTCTCCTCCCTTCCCCAT
CTATTTCTTCCACGTTGACAACGACACGGATGTCCAACGGTCAGGGTCAA
GGAGACTTTGACGCCCCCGAAAGCGACGACGGCACCAGCCCACCTCCCGC
TCCATCAGACATGCTGGCGCGCATCATGCAGGGAGCTCAACAACGACGGG
CATCTTCGGGCGAAGGCGGCGACTGGGCGTTGTATTCGTCGGCGCTGCGA
GGCGGTGTGGTCCTGGTTGCCAACCCAGCCGTTTTTCTCAACCGCCCGCC
CGCGGAGCTAGCCTCCCGCTTCTTCCTCCCTCAAGACCTCTCCCTCGAAC
TGATGGACGGCCTGGGCGGCAGGAGCCCGCAAGCCGTCGACAATCTGGCC
AATATCTTGCCCGTGGTTCTCTTGCTTGGCTCCGGGAATGGCGGCACCAG
CGGCCTGGTGCTCAATAGGCGAACGGGCTATTTGGTGGGGGACCTGAACG
TGGACTCGTCGGGATTCAAGATCCAGCCTGTCCACCTAGGGGGCATGGGC
GAGAACGAGGGCATCTTCATGCTCCACGCATACCCAGAGCTGCAGAAGAC
GACTCAGGTCACGAATGACGGGCTGTGCTTCGGAGGCAACTATACGGCGG
CCCAAGAGCTGGTGCTCGGGAAGAAAGCCTCCTCTGCGCGCTTCAAATTC
TTCATCCAGCAGACCGTCTGGGCCCCGGGCGAGCTCAAGAAGGAGATTGA
GGACAATGTCTGGTATCCCGCCCAGGTCTCCAAGGACGTGATCCTGAAGA
ACCGCGGCCGGGAAGGGCCCAAGATGGCCAAGCCTTTGTGGACCGAGATT
CTGGAGCTTATGGGCGGGACCTTTTTGGAGATCAAGAAGGAGTTGTATGA
GAACGAGGGCAGGCGGTGGAGGGAGGGAGGGACGGAGGGAGAGATATAA

Synonyms

Publications