NO05G05200.1, NO05G05200.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05200.1
Unique Name	NO05G05200.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4661
Alignment location	chr5:1368310..1375856 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1368310..1375856 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G05200.1 vs.
Match: EWM27877.1 (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1201.8 bits (3108), Expect = 0.000e+0
Identity = 671/1004 (66.83%), Postives = 765/1004 (76.20%), Query Frame = 0

Query:    3 MDMDCQMG-GPVRTCERGPYANHFDAFTKAPSIHKLDPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMSESPQDPAVQYKGLVAIVKTASVEGPPQYSIQNVTRLGELGACRLVATAMRTFIGDRCIQLLGLEAIEALAAKSEGARAHFEQEAAETLFERIFELYPLDKDLQAAACQALVGLATGHPDWQTRLGCAGLCKCVAEILRRWPDDYGIQLSGLYALNALLSRHEANAQRVFDAGAGALLVHMMKAFWRDLDVLDGAVTAVYSLSARGPKERGALGQVDAGRVLLAVMAAHPDARDIQVKCCFTLAKLAWQHPENRQRLVALKAALVVTQALKKHPVDVPVQVAGAAAMVALYMPLAVGHDLSESRNGNGTTILLNKTAVLLTSPSQVQLKGSHLSATTPADVPTTSSPSTSMQPPHANGTALAAREIETGEAAAGRGKGSFVEGNGYPEAQAFQALVCALAAIPAEPELELSASPALLFLLEAVNDRQPLLDDVTTAARFLAAMRNYKGDEDSQGIYLEVAILITDARPAAREALLQAGIVPHILELMARYLSVAPLQEKCCMILATLTEESPEAAEKVWNEESMFALVEAMKAHPNHSVLQHFALSCLQNLAEEGTAAQRANLLTPPVLSLVAMALAFHPHDEDISNAALGLVVSLAAQDINSSPPCTTSIHNKNNNNNNNSTTSTTTNTNNIPDINGNGTPPSSHSS---PSGPAYVHAVLRLLTAVWKHIHLSPSPSSLSLSAAATVQQQQQQQQEKKEIERVGALGVLRWLTVVARDCAPNEVTLLSGDNTVHAMFEEVAGRLATTHPRPHTHPPSTLMPPPPPTSAFLVPASSKKRACPSSSPPSASSSASSSDSSSLLLAAAEAQGKRLCLDLVASLPQKGQATSWPRACGAVVEGLQEGREGGALALGALAAVVALAEGNKQNKNVLQGLGAAKGLGVVAAKMGGKEGGREGEVVAKAFEALR 1003
            M+MDCQMG GPVRTCERGPY  HFD+F K PS+ +L+PCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRM+ESP DP+VQY+GL+AIVKTASVEGPPQYSIQNVTRLGELGACRLV TAM+TF GDRCIQL+GLEAIEALAAKSEGARA+F+QE+AE LF RIFE++  DKDLQAAACQALVGLATGHP+WQ RLG AGLC  V E LR+WPDDYGIQLSGLYALNALLSRHEAN QRVF+AGAGA+LV MMK FWRDLDVLDGA+TA+YSLS+RG  ER  LGQ+D  RVLLAVMAAHPDARD+QVKCCF +AKLAWQH ENR RLVALKAALVVTQ   KHP DV + VAG+AAMVALYMPLA+   L+E      TTILLNKTA LLTSPS       H     P  V    S     +PP         RE    E       G   +G+G  EAQAFQALV ALA IPAE ELE+SASPALLFLLE VN R PLLDD  TA+ F+AAM NY  DEDSQ IYLEVAILITDA P ARE LLQ+GI   +L+LM RYLSVA LQEKCCM+LATLTEESPE  E+VWNE+ M ALV+ +KAHP+  VLQHFALSCLQNLAE+G+  QR++L+TP VLSLVA++LA HP DEDI +AALGL+VSLAAQ+++S     T  H  N + N N   S     N   ++   G    + S+   PSGP+YV AVL +L AVWK IH S S +S   S ++ V        ++KEI R+ ALG+L+WLT+VARDCAP+EV +LS D +VH MFEEVAG LA +HPR H+H PSTLM PPPP    L+   S+KR+  SS P +A++S+S       L+  AE   KRLCLDLVASLPQ+   TSWPRACGAVV GLQEG+  GA+ L ALA VVALAEGN+QNK+VLQGLGA KGL  VAA +      RE E++ KA EALR
Sbjct:    1 MEMDCQMGEGPVRTCERGPYVYHFDSFFKGPSVPRLNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAE----KATTILLNKTAFLLTSPS-----AQHKFHHHPPSVLANGS-----EPPPFQQAVGWNRENPAKERPTDL-NGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGS-HDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNV-------LDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLL---SQKRSRLSSLPNTAAASSS-------LIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVV----ETRERELLTKAQEALR 967

The following BLAST results are available for this feature:

BLAST of NO05G05200.1 vs.

BLAST of NO05G05200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27877.1	0.000e+0	66.83	ring u-box domain-containing protein [Nannochlorop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G05200	NO05G05200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05200.1	NO05G05200.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05200.1.cds1	NO05G05200.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds2	NO05G05200.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds3	NO05G05200.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds4	NO05G05200.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds5	NO05G05200.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds6	NO05G05200.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds7	NO05G05200.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds8	NO05G05200.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds9	NO05G05200.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds10	NO05G05200.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds11	NO05G05200.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds12	NO05G05200.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds13	NO05G05200.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds14	NO05G05200.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds15	NO05G05200.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds16	NO05G05200.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05200.1.cds17	NO05G05200.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1368310..1375856-
coding sequence from alignment at chr5:1368310..1375856-

mRNA sequence

>NO05G05200.1 ID=NO05G05200.1|Name=NO05G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=4661bp
TTGCTTTGGTCGTTCTCCGTGCTCTCGATCGGGAGGGGCATCATCGACCG
GGGCCTTATCAAGTGGAGCCCATTTATGAGGCATAGCGCATCCTCGGCGT
CCCTACTTGGACTCTTTGCGAGCACTAGGAAAGCATCGCAGCAAGTAGAA
CATATTTACACATGCGTTCTGCTACTGCTTTAGCACTTTTTCCTAGTTGA
CGCAAGGAAAGCTAAGCTGATATGACACAACGACGTTCGTACATTGACTC
AAGAGGAAATTTTTCCTTTTCCTGTCCCTGGCTATCCACCGACTTACCGT
CACACTGTCTCCTCAATCATATTAAATTGGCCACTACGCAGGCACTCGGG
CTGCCAAGTTGACTCAGCGGGCCTCGACGCGGCCAGGCAAGCGACGAGGA
AAGCCTGCAGTGTCAAGACATAGGCCTGCCTTGTACTTGATTGCCTGCCG
CCAAGATTTTCAGGGGTAGCATAAGGAAAAGAAAGGCCAAACCCTCGAGC
TTGCATCCGGACGGGAAAACTCACACTAAAGCGAAAGCGCCACAACGCAG
TCGTAGCGGCACCGTCACCACAAGGAGGAGCGGCGGCTTCGCATCGGCAG
CAGCAGCACCATTATCAGGAGGAGGAGTAGCGGCTGCACCACCAGCAGCA
GCAGCAGGCTCGGCTTCCACCCCCTTCTCTCACTAAGCAGTAGATGTCGA
TGGACATGGATTGCCAAATGGGTGGACCTGTCCGAACATGCGAGCGCGGA
CCCTATGCCAATCATTTTGACGCCTTTACCAAAGCCCCTTCAATCCACAA
GCTTGACCCTTGCGTGATCTGCTTGGAGCCCATCGAGGAAGGAGCGGACC
TGACCTCCCTGTTAGGGTGTGAGGACCGACACCACTTCCACGCCAATTGC
ATCAACTCCTGGTTGGAAAGAAATGCTACTTGCCCCACCTGCCGCAAGGG
CGCCACCCGCTTCCCCTTCTTGCGACGTATGTCCGAGTCGCCCCAAGACC
CTGCCGTGCAGTATAAGGGCCTCGTTGCCATTGTGAAAACGGCCTCCGTG
GAGGGACCGCCGCAATACTCCATCCAAAATGTCACCCGCCTTGGGGAACT
AGGCGCCTGCCGGCTGGTGGCCACGGCCATGCGCACTTTCATTGGAGACA
GGTGCATTCAGCTGCTGGGGCTGGAAGCGATCGAGGCCCTGGCTGCCAAG
AGCGAGGGGGCGCGGGCGCATTTCGAGCAGGAGGCGGCCGAGACCCTGTT
CGAGCGCATTTTCGAGCTCTACCCCCTCGACAAGGATTTGCAAGCTGCCG
CCTGTCAGGCCCTCGTGGGTCTCGCCACGGGCCACCCGGACTGGCAAACG
CGCCTTGGTTGTGCCGGCCTCTGTAAGTGCGTGGCAGAGATTCTCCGTCG
CTGGCCCGATGACTACGGCATTCAACTCTCAGGCCTGTACGCGCTCAACG
CCCTCCTCTCCCGGCACGAGGCCAATGCCCAGCGAGTCTTCGACGCGGGG
GCCGGGGCTCTGTTGGTGCACATGATGAAGGCTTTCTGGCGGGATCTGGA
TGTGCTCGACGGTGCTGTCACGGCCGTTTACAGCCTCTCTGCGCGCGGCC
CGAAGGAACGCGGCGCTCTAGGTCAAGTGGATGCCGGCCGGGTCTTGCTC
GCCGTCATGGCTGCCCATCCCGACGCGCGGGATATCCAGGTCAAGTGCTG
TTTCACCCTTGCCAAGCTCGCTTGGCAGCACCCTGAGAACCGACAGCGGC
TGGTGGCGCTGAAAGCCGCTTTGGTCGTGACGCAGGCGCTGAAGAAGCAT
CCCGTGGACGTGCCCGTGCAAGTGGCAGGTGCAGCGGCGATGGTAGCTCT
CTACATGCCCTTGGCCGTTGGGCACGATTTATCGGAGAGCCGTAACGGCA
ATGGCACGACCATCCTCCTCAACAAGACAGCCGTCCTCCTCACCTCCCCC
TCTCAGGTGCAGCTTAAAGGCAGCCACCTTTCCGCGACTACCCCCGCCGA
TGTCCCCACCACCTCCTCCCCCTCCACTTCCATGCAGCCACCCCACGCAA
ACGGCACAGCTCTAGCAGCAAGAGAAATAGAAACTGGAGAAGCGGCTGCA
GGACGGGGTAAAGGGAGCTTTGTGGAAGGAAACGGCTATCCGGAGGCGCA
GGCGTTTCAGGCCCTTGTCTGCGCCCTGGCCGCCATCCCTGCCGAGCCCG
AGCTTGAGCTCTCCGCCTCCCCTGCCCTCCTCTTCCTCCTCGAGGCCGTC
AATGACCGACAGCCCCTTCTGGACGACGTGACTACGGCGGCAAGGTTTTT
GGCGGCGATGAGGAACTACAAGGGTGATGAGGACTCCCAAGGCATTTACC
TCGAGGTGGCTATCCTCATAACGGATGCCCGACCTGCCGCCCGCGAGGCG
TTGCTGCAGGCTGGGATTGTCCCTCACATCCTTGAGTTAATGGCTCGGTA
CCTGTCCGTGGCCCCCCTGCAAGAAAAATGTTGCATGATCTTAGCCACCC
TGACGGAGGAAAGTCCCGAGGCTGCGGAAAAAGTGTGGAATGAAGAGTCG
ATGTTCGCCTTGGTGGAGGCGATGAAGGCTCACCCCAACCACTCTGTGCT
GCAGCACTTCGCCCTCTCTTGCCTACAGAACCTGGCTGAGGAGGGTACAG
CTGCCCAGCGCGCTAACCTCCTGACCCCTCCCGTCCTCTCCCTCGTCGCC
ATGGCGCTTGCCTTCCACCCTCACGACGAGGACATTTCAAATGCTGCCCT
GGGGCTAGTGGTCTCCCTAGCAGCGCAGGACATCAACTCTTCCCCTCCAT
GCACCACCAGCATCCACAATAAAAACAACAACAATAACAACAACAGCACC
ACCTCCACCACCACCAACACCAACAACATCCCCGATATTAACGGCAATGG
CACTCCACCTTCCTCCCATTCCTCCCCCTCCGGTCCTGCCTATGTTCATG
CCGTTCTCCGCCTCCTCACTGCTGTCTGGAAGCACATCCACCTCTCCCCT
TCCCCTTCCTCCCTTTCGCTCTCGGCCGCGGCGACGGTGCAGCAGCAGCA
GCAGCAGCAGCAAGAGAAGAAGGAGATTGAGCGTGTGGGGGCCCTAGGAG
TCTTGCGTTGGCTGACTGTGGTGGCCCGGGACTGCGCACCCAACGAAGTC
ACCCTCCTGAGCGGTGACAACACCGTCCATGCCATGTTCGAGGAGGTGGC
CGGTCGACTCGCTACCACGCATCCCCGCCCCCACACCCACCCTCCCTCCA
CCCTCATGCCTCCTCCCCCTCCGACATCTGCCTTCCTTGTCCCCGCCTCG
TCCAAGAAGCGAGCGTGTCCTTCCTCCTCCCCTCCCTCCGCCTCCTCCTC
CGCCTCCTCCTCCGACTCTTCCTCCCTTCTCCTGGCTGCGGCCGAAGCAC
AAGGCAAGCGTCTGTGCCTGGACCTGGTGGCTTCCCTCCCTCAGAAGGGG
CAAGCCACCTCCTGGCCTCGGGCGTGCGGCGCCGTCGTGGAGGGTCTGCA
GGAAGGGAGGGAAGGAGGGGCGCTGGCTCTCGGAGCACTGGCTGCTGTTG
TTGCACTCGCGGAAGGAAATAAGCAAAATAAAAACGTACTGCAGGGTTTG
GGGGCAGCGAAGGGTCTCGGGGTGGTTGCGGCGAAGATGGGAGGAAAGGA
AGGAGGGAGGGAGGGAGAGGTGGTGGCCAAGGCGTTCGAGGCGCTGCGGT
AGCCGAAGGGGTGACGGAACCGATGGGGAAAAATGTGCATAATCTAAGGG
AAGGATGGATTGGAGGTAGAGTGGGGGAGAAGGGAGAGAGAGTGTCTGAC
TTGACCGACAGTGTCTTCCAAATTTCTCTCGCTCTCACCTGACACAAAGC
CGGTGGCCGTCCCCCCGAACCATTAGATTTCGAGCTTTTATTTTCATTTT
TTCTATGCATACACACATAATATTTCTTTGGATCCAGAGCGGAATAAACC
AATCAGGCACAGTCGAAATTAGGAAAAGATTGAAAGAATCTGTAAATCGG
AGCCCGGCAGGTGTAAAAGAGGCGGCGCCTTCAGGCCGTGGGTCGTCCAG
CTTTCGAGAGAAAAATAGCGTCACCAGCACCCGCAGCACCGGCAGAAGTA
TTTATGATAATGGTAGTTGTAGGAGTAGGAGCAGGAGCACCAGCAGCGAA
AGGAGGACTAGTGGGACGCCGACAAAAAATAGAGTCTATAGGAGGGAGGG
GAGCCCACAACCAGCAGCAACAGCAGCAGCAGCAGCTGCAAAAACTGCAC
TATCCATCTGTTCTCAGCGAAATCTTGGAGAGATAGTATTTAATCTAATT
CCTCCCACCTGGCGTCTTCATGATTTTTGGTGACCGAAAAGAAGTAAGAG
ATATCATAATCGTGAGAAGAAAAAGAGCATGAAGGTGGTATCAATAAGGA
GGACAGTCTGGGACCTGGCTGGACTCATTTGTGTTTATGTGTGCTTGTGT
GTGTATGTGTGCTTGCGACGTGGGGAAAGAATGACTATGATATGACAGAA
ATTAGACATGACAGGGAGGATGGAGGGACAGGAGGGAAGGACGAGGACGA
GGAGGAGGAGCAGAAGCAACAACAAATAACAAAAGGACTAGCAGAAGAGA
AATGAAAAAGAGGTAGTCAAGGAGAACGGAAAAGAAGAGAATGAAATCGC
TCTATTCCTAA

protein sequence of NO05G05200.1

>NO05G05200.1-protein ID=NO05G05200.1-protein|Name=NO05G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1003bp
MSMDMDCQMGGPVRTCERGPYANHFDAFTKAPSIHKLDPCVICLEPIEEG
ADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMSESP
QDPAVQYKGLVAIVKTASVEGPPQYSIQNVTRLGELGACRLVATAMRTFI
GDRCIQLLGLEAIEALAAKSEGARAHFEQEAAETLFERIFELYPLDKDLQ
AAACQALVGLATGHPDWQTRLGCAGLCKCVAEILRRWPDDYGIQLSGLYA
LNALLSRHEANAQRVFDAGAGALLVHMMKAFWRDLDVLDGAVTAVYSLSA
RGPKERGALGQVDAGRVLLAVMAAHPDARDIQVKCCFTLAKLAWQHPENR
QRLVALKAALVVTQALKKHPVDVPVQVAGAAAMVALYMPLAVGHDLSESR
NGNGTTILLNKTAVLLTSPSQVQLKGSHLSATTPADVPTTSSPSTSMQPP
HANGTALAAREIETGEAAAGRGKGSFVEGNGYPEAQAFQALVCALAAIPA
EPELELSASPALLFLLEAVNDRQPLLDDVTTAARFLAAMRNYKGDEDSQG
IYLEVAILITDARPAAREALLQAGIVPHILELMARYLSVAPLQEKCCMIL
ATLTEESPEAAEKVWNEESMFALVEAMKAHPNHSVLQHFALSCLQNLAEE
GTAAQRANLLTPPVLSLVAMALAFHPHDEDISNAALGLVVSLAAQDINSS
PPCTTSIHNKNNNNNNNSTTSTTTNTNNIPDINGNGTPPSSHSSPSGPAY
VHAVLRLLTAVWKHIHLSPSPSSLSLSAAATVQQQQQQQQEKKEIERVGA
LGVLRWLTVVARDCAPNEVTLLSGDNTVHAMFEEVAGRLATTHPRPHTHP
PSTLMPPPPPTSAFLVPASSKKRACPSSSPPSASSSASSSDSSSLLLAAA
EAQGKRLCLDLVASLPQKGQATSWPRACGAVVEGLQEGREGGALALGALA
AVVALAEGNKQNKNVLQGLGAAKGLGVVAAKMGGKEGGREGEVVAKAFEA
LR*

mRNA from alignment at chr5:1368310..1375856-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G05200.1 ID=NO05G05200.1|Name=NO05G05200.1|organism=Nannochloropsis oceanica|type=mRNA|length=7547bp|location=Sequence derived from alignment at chr5:1368310..1375856- (Nannochloropsis oceanica)
TTGCTTTGGTCGTTCTCCGTGCTCTCGATCGGGAGGGGCATCATCGACCG
GGGCCTTATCAAGTGGAGCCCATTTATGAGGCATAGCGCATCCTCGGCGT
CCCTACTTGGACTCTTTGCGAGCACTAGGAAAGCATCGCAGCAAGTAGAA
CATATTTACACATGCGTTCTGCTACTGCTTTAGCACTTTTTCCTAGTTGA
CGCAAGGAAAGCTAAGCTGATATGACACAACGACGTTCGTACATTGACTC
AAGAGGAAATTTTTCCTTTTCCTGTCCCTGGCTATCCACCGACTTACCGT
CACACTGTCTCCTCAATCATATTAAATTGGCCACTACGCAGGCACTCGGG
CTGCCAAGTTGACTCAGCGGGCCTCGACGCGGCCAGGCAAGCGACGAGGA
AAGCCTGCAGTGTCAAGACATAGGCCTGCCTTGTACTTGATTGCCTGCCG
CCAAGATTTTCAGGGGTAGCATAAGGAAAAGAAAGGCCAAACCCTCGAGC
TTGCATCCGGACGGGAAAACTCACACTAAAGCGAAAGCGCCACAACGCAG
TCGTAGCGGCACCGTCACCACAAGGAGGAGCGGCGGCTTCGCATCGGCAG
CAGCAGCACCATTATCAGGAGGAGGAGTAGCGGCTGCACCACCAGCAGCA
GCAGCAGGCTCGGCTTCCACCCCCTTCTCTCACTAAGCAGTAGATGTCGA
TGGACATGGATTGCCAAATGGGTGGACCTGTCCGAACATGCGAGCGCGGA
CCCTATGCCAATCATTTTGACGGTACGTGGGAAAGAGGCCGAGAGAGGTG
GTGGGGGAGGAGAAAAGCCAAGCAGTTTTGTGAAGGAAGAAGGAAAAAGT
GTATGTAGGGGAATAGGGGAAACATATGTGATTGCATTCGTTGGGGTGGC
ACGTGCCCTACCGCTCCCTTGCTTGCTCCTATATCCACTTTTGCTTCCTC
TTTGTGAGAAAGGCGTAGGAAGCTTATTCGCTCTGCCAACTCTCCCCATC
CACCCACCGACCCTCCCTCCCTCCCTCTCACAGCCTTTACCAAAGCCCCT
TCAATCCACAAGCTTGACCCTTGCGTGATCTGCTTGGAGCCCATCGAGGA
AGGAGCGGACCTGACCTCCCTGTTAGGGTGTGAGGACCGACACCACTTCC
ACGCCAATTGCATCAACTCCTGGTTGGAAAGAAATGCTACTTGCCCCACC
TGCCGCAAGGGCGCCACCCGCTTCCCCTTCTTGCGACGTATGTCCGAGTC
GCCCCAAGACCCTGCCGTGCAGTATAAGGGCCTCGTTGCCATTGTGAAAA
CGGCCTCCGTGGAGGGACCGCCGCAAGTACGTTTCTCTTCTCTCTCTCTC
CCTCTCTCCCACATCCCTCCCTCCCTCCATTACTATATGGTTCTCACTGT
TCTCATCACTCAAAAAGTTAATGGTGGTGGTGGTGGTGCTGCTGTTGCTG
CTCCAGTCACTCAATCTGGGCCTTGGACGTGAGAAGACTTATATGCATCA
ACTCATGCTCTTCCTCCCTCCCTCCCTCTCCTTCTCTCTTTCCCTTCCTC
CCTTCAACCCAGTACTCCATCCAAAATGTCACCCGCCTTGGGGAACTAGG
CGCCTGCCGGCTGGTGGCCACGGCCATGCGCACTTTCATTGGAGACAGGT
GCATTCAGCTGCTGGGGCTGGAAGCGATCGAGGCCCTGGCTGCCAAGAGC
GAGGGGGCGCGGGCGCATTTCGAGCAGGTAGGGTGGTGTCTCCTACCTCC
CTTCCTCTATCCCTTCCTTCCTCCCTCCTTCCTTTCTTCCCTCCCTTCCT
CCCCTTCCTTCCCGTCCCTCCCTTACTCCGCCTCTTCCAAACCTGCACAG
CAAACAGAACAGCCTCTCTCATCATCCATTGCCCTTCATCCTCCCTCCCT
TCTTTCCCTTCTTTTTCCTCCCCCTCCCCCTCCCCTCCCCCTCCCCTCTT
CCTCCCTCTCCTCCTCTTCCTCAATCCTCAACAGGAGGCGGCCGAGACCC
TGTTCGAGCGCATTTTCGAGCTCTACCCCCTCGACAAGGATTTGCAAGCT
GCCGCCTGTCAGGTAGGGAGAGGGGGAAGGAAGGAGGGAGGGGTGTAGGT
ACAACGCAGAGGGAGGGAAGGGTGTTGGTACAACGCAGACTTGGGCTGCT
ACGCATAAAATAAAATACGTATACGTAGTCGTCATTTTAACAGGAATCAC
CTCCCTCCCTCCATCCCTCCCTCTCGCCACCTAGGCCCTCGTGGGTCTCG
CCACGGGCCACCCGGACTGGCAAACGCGCCTTGGTTGTGCCGGCCTCTGT
AAGTGCGTGGCAGAGATTCTCCGTCGCTGGCCCGATGACTACGGCATTCA
ACTCTCAGGTAGGTGATAACTTGCTCTTTCCCTCCCTCCCTTCCTCCCTC
CCTCCCTCCCTCCAGCATTCCTTCCCCGTCCCCAGGTAACGGCCTCTTGG
GCCGTTGGGGTTTGCACCCACTCACCGCCCTTCGCGCCCTCCCTTCCTCC
CTCCATCCTTACCTCCTTTCCCCCCTCCCTCTAGGCCTGTACGCGCTCAA
CGCCCTCCTCTCCCGGCACGAGGCCAATGCCCAGCGAGTCTTCGACGCGG
GGGCCGGGGCTCTGTTGGTGCACATGATGAAGGCTTTCTGGCGGGATCTG
GATGTGCTCGACGGTGCTGTCACGGCCGTTTACAGGTACACTAGCACGCA
TTCGCATGCACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCGTTTTCTC
CAACTGCGCACCCTTATCATCCCTCCTTCCCTCCCTCCTTACCTTCCTCC
TTCCCTCCCTCCCTTGCAGCCTCTCTGCGCGCGGCCCGAAGGAACGCGGC
GCTCTAGGTCAAGTGGATGCCGGCCGGGTCTTGCTCGCCGTCATGGCTGC
CCATCCCGACGCGCGGGATATCCAGGTACGGTTAGGGAGAGAGGGAGGGA
GGAAACAGATTGAGTGGTATGTATCTGTACTGTTCTCAGCCCTCCTTCCC
TCTCTCTCTCCCTCCCTCCGTCCACCTACCCACCCGCGCCTGCCCGTCCG
CCCCCCTCACAGGTCAAGTGCTGTTTCACCCTTGCCAAGCTCGCTTGGCA
GCACCCTGAGAACCGACAGCGGCTGGTGGCGCTGAAAGCCGCTTTGGTCG
TGACGCAGGCGCTGAAGAAGCATCCCGTGGACGTGCCCGTAAGGAGAGAG
GGAGGGAGAGAGGGAGGGAGGGAGGAAGAGGAGGGAGAGCGTGCCACGCT
TGTGCAGAAAAAACTCGTGTCAAGACACACCCCTGTATATATACACGTAT
GTGTGTGTTATTATTGCGAGATCAACTTTGAAACAACACTTATAGATAAA
CTCACTCGTTCTCATTTTTTAACTTCTCCTCCCCTGCCTTTCTCCACCCT
GCTGCTGCTGCTGCTCGACAGGTGCAAGTGGCAGGTGCAGCGGCGATGGT
AGCTCTCTACATGCCCTTGGCCGTTGGGCACGATTTATCGGAGAGCCGTA
ACGGCAATGGTGAGAGAGCACGACTGCACCCGCCCTGTCATCTCCTCCCC
CCCCCCCCCTTCTCCGCCACTGACCACAGCCCTGTCTCCATCCTCCCCCC
CTCCTCCTTAGGCACGACCATCCTCCTCAACAAGACAGCCGTCCTCCTCA
CCTCCCCCTCTCAGGTGCAGCTTAAAGGCAGCCACCTTTCCGCGACTACC
CCCGCCGATGTCCCCACCACCTCCTCCCCCTCCACTTCCATGCAGCCACC
CCACGCAAACGGCACAGCTCTAGCAGCAAGAGAAATAGAAACTGGAGAAG
CGGCTGCAGGACGGGGTAAAGGGAGCTTTGTGGAAGGAAACGGCTATCCG
GAGGCGCAGGCGTTTCAGGTAGGGGAAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGGGTACATGCACCCTAGTGTGAATTTGATGTCCTTATGAA
CCACCAACCCCTTCAAAGTGTACCCTGATATATGAATATCAATATGATGT
CCTTATGAACCACCAATCCCTTCCTTCCTCCCCTCCTACCCCCCTCCCCC
TCCCTCCTCCCTTCCATCCGCCCCCAGGCCCTTGTCTGCGCCCTGGCCGC
CATCCCTGCCGAGCCCGAGCTTGAGCTCTCCGCCTCCCCTGCCCTCCTCT
TCCTCCTCGAGGCCGTCAATGACCGACAGCCCCTTCTGGACGACGTGACT
ACGGCGGCAAGGTTGGTAACGCCGTGCGCCCTTTCCCTCCTCCCTCCCTC
CCTCCCTTCCTCCCTCCCTCCTCTCTCTCTGGTCTCTTTCATACCCTTAC
GGCCAACCTTTCGGCGGGCGATTCATCTCACCCTCCCTAACTCCCTCCCT
CCCTCCCTCCCAGGTTTTTGGCGGCGATGAGGAACTACAAGGGTGATGAG
GACTCCCAAGGCATTTACCTCGAGGTGGCTATCCTCATAACGGATGCCCG
ACCTGCCGCCCGCGAGGCGTTGCTGCAGGTGCGTGGCCTCCCTCCCTTCC
TCCCTTCCTCCCTTCCTTCCTCCCTCCCTCCCTACCTCCCTCTCTCTCTC
TCCCTCTCTGCCCCATCCTTGCTGCAGTCCGTCGGAATATTAACCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCAGGCTGGGATT
GTCCCTCACATCCTTGAGTTAATGGCTCGGTACCTGTCCGTGGCCCCCCT
GCAAGAAAAATGTTGCATGATCTTAGCCACCCTGACGGAGGAAAGTCCCG
AGGCTGCGGAAAAAGTGTGGAATGAAGAGGTGAGGAGGAGGCGAAGGGGG
GAAGGGATGATGTTGGCCTGGAGTATCTATGTCAGTGGTTGAACTTACCT
GTACTTTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCTCCTCCCTAGTCGATGTTCGCCTTGGTGGAGGCGATG
AAGGCTCACCCCAACCACTCTGTGCTGCAGCACTTCGCCCTCTCTTGCCT
ACAGGTAAGCGTTGTACAGGTGTACATGAGCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCTACCCATCCTCACCCTCG
GAGGAAATATTCGCCTTGCTCGTTGGTCACTTCCCCCCCCCTCCCTCCCC
CCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCCTCTCTCCCTCC
CTCCCTCCTGCAGAACCTGGCTGAGGAGGGTACAGCTGCCCAGCGCGCTA
ACCTCCTGACCCCTCCCGTCCTCTCCCTCGTCGCCATGGCGCTTGCCTTC
CACCCTCACGACGAGGACATTTCAAATGCTGCCCTGGGGCTAGTGGTCTC
CCTAGCAGCGCAGGCAAGAGAAGGGGGAGGGAGGGAGAGAGAGGAGGGGA
GGGAGGGAGAGAGCAAATTTGCAGACATCGAGGCATAACCCACCTGACGC
CTACCTCCCTCCCTCCCCCCCTCCATCCCCTCCCCTTCTTCCTACAAACT
TAAGGACATCAACTCTTCCCCTCCATGCACCACCAGCATCCACAATAAAA
ACAACAACAATAACAACAACAGCACCACCTCCACCACCACCAACACCAAC
AACATCCCCGATATTAACGGCAATGGCACTCCACCTTCCTCCCATTCCTC
CCCCTCCGGTCCTGCCTATGTTCATGCCGTTCTCCGCCTCCTCACTGCTG
TCTGGAAGCACATCCACCTCTCCCCTTCCCCTTCCTCCCTTTCGCTCTCG
GCCGCGGCGACGGTGCAGCAGCAGCAGCAGCAGCAGCAAGAGAAGAAGGA
GATTGAGCGTGTGGGGGCCCTAGGAGTCTTGCGTTGGCTGACTGTGGTGG
CCCGGGACTGCGCACCCAGTAAGATGCCAAGGAGGGAGGGAGGGAGGGGG
GGAGGGCGGGAGGGGAGGCATTGATGTGTGCCGAGAATCGTATCTCTCTC
TTCTCTTTTACGCCCTCCGCCATTTCAGCTTTTGCACTGACACTCCTTCC
CTCTTTTCCATCCCCCCATCCCTGATAGACGAAGTCACCCTCCTGAGCGG
TGACAACACCGTCCATGCCATGTTCGAGGAGGTGGCCGGTCGACTCGCTA
CCACGCATCCCCGCCCCCACACCCACCCTCCCTCCACCCTCATGCCTCCT
CCCCCTCCGACATCTGCCTTCCTTGTCCCCGCCTCGTCCAAGAAGCGAGC
GTGTCCTTCCTCCTCCCCTCCCTCCGCCTCCTCCTCCGCCTCCTCCTCCG
ACTCTTCCTCCCTTCTCCTGGCTGCGGCCGAAGCACAAGGCAAGCGTCTG
TGCCTGGACCTGGTGGCTTCCCTCCCTCAGAAGGGGCAAGCCACCTCCTG
GCCTCGGGCGTGCGGCGCCGTCGTGGAGGGTCTGCAGGAAGGGAGGGAAG
GAGGGGCGCTGGCTCTCGGAGCACTGGCTGCTGTTGTTGCACTCGCGGAA
GGAAATAAGCAAAATAAAAACGTACTGCAGGGTTTGGGGGCAGCGAAGGG
TCTCGGGGTGGTTGCGGCGAAGATGGGAGGAAAGGAAGGAGGGAGGGAGG
GAGAGGTGGTGGCCAAGGCGTTCGAGGCGCTGCGGTAGCCGAAGGGGTGA
CGGAACCGATGGGGAAAAATGTGCATAATCTAAGGGAAGGATGGATTGGA
GGTAGAGTGGGGGAGAAGGGAGAGAGAGTGTCTGACTTGACCGACAGTGT
CTTCCAAATTTCTCTCGCTCTCACCTGACACAAAGCCGGTGGCCGTCCCC
CCGAACCATTAGATTTCGAGCTTTTATTTTCATTTTTTCTATGCATACAC
ACATAATATTTCTTTGGATCCAGAGCGGAATAAACCAATCAGGCACAGTC
GAAATTAGGAAAAGATTGAAAGAATCTGTAAATCGGAGCCCGGCAGGTGT
AAAAGAGGCGGCGCCTTCAGGCCGTGGGTCGTCCAGCTTTCGAGAGAAAA
ATAGCGTCACCAGCACCCGCAGCACCGGCAGAAGTATTTATGATAATGGT
AGTTGTAGGAGTAGGAGCAGGAGCACCAGCAGCGAAAGGAGGACTAGTGG
GACGCCGACAAAAAATAGAGTCTATAGGAGGGAGGGGAGCCCACAACCAG
CAGCAACAGCAGCAGCAGCAGCTGCAAAAACTGCACTATCCATCTGTTCT
CAGCGAAATCTTGGAGAGATAGTATTTAATCTAATTCCTCCCACCTGGCG
TCTTCATGATTTTTGGTGACCGAAAAGAAGTAAGAGATATCATAATCGTG
AGAAGAAAAAGAGCATGAAGGTGGTATCAATAAGGAGGACAGTCTGGGAC
CTGGCTGGACTCATTTGTGTTTATGTGTGCTTGTGTGTGTATGTGTGCTT
GCGACGTGGGGAAAGAATGACTATGATATGACAGAAATTAGACATGACAG
GGAGGATGGAGGGACAGGAGGGAAGGACGAGGACGAGGAGGAGGAGCAGA
AGCAACAACAAATAACAAAAGGACTAGCAGAAGAGAAATGAAAAAGAGGT
AGTCAAGGAGAACGGAAAAGAAGAGAATGAAATCGCTCTATTCCTAA

Coding sequence (CDS) from alignment at chr5:1368310..1375856-

>NO05G05200.1 ID=NO05G05200.1|Name=NO05G05200.1|organism=Nannochloropsis oceanica|type=CDS|length=3009bp|location=Sequence derived from alignment at chr5:1368310..1375856- (Nannochloropsis oceanica)
ATGTCGATGGACATGGATTGCCAAATGGGTGGACCTGTCCGAACATGCGA
GCGCGGACCCTATGCCAATCATTTTGACGCCTTTACCAAAGCCCCTTCAA
TCCACAAGCTTGACCCTTGCGTGATCTGCTTGGAGCCCATCGAGGAAGGA
GCGGACCTGACCTCCCTGTTAGGGTGTGAGGACCGACACCACTTCCACGC
CAATTGCATCAACTCCTGGTTGGAAAGAAATGCTACTTGCCCCACCTGCC
GCAAGGGCGCCACCCGCTTCCCCTTCTTGCGACGTATGTCCGAGTCGCCC
CAAGACCCTGCCGTGCAGTATAAGGGCCTCGTTGCCATTGTGAAAACGGC
CTCCGTGGAGGGACCGCCGCAATACTCCATCCAAAATGTCACCCGCCTTG
GGGAACTAGGCGCCTGCCGGCTGGTGGCCACGGCCATGCGCACTTTCATT
GGAGACAGGTGCATTCAGCTGCTGGGGCTGGAAGCGATCGAGGCCCTGGC
TGCCAAGAGCGAGGGGGCGCGGGCGCATTTCGAGCAGGAGGCGGCCGAGA
CCCTGTTCGAGCGCATTTTCGAGCTCTACCCCCTCGACAAGGATTTGCAA
GCTGCCGCCTGTCAGGCCCTCGTGGGTCTCGCCACGGGCCACCCGGACTG
GCAAACGCGCCTTGGTTGTGCCGGCCTCTGTAAGTGCGTGGCAGAGATTC
TCCGTCGCTGGCCCGATGACTACGGCATTCAACTCTCAGGCCTGTACGCG
CTCAACGCCCTCCTCTCCCGGCACGAGGCCAATGCCCAGCGAGTCTTCGA
CGCGGGGGCCGGGGCTCTGTTGGTGCACATGATGAAGGCTTTCTGGCGGG
ATCTGGATGTGCTCGACGGTGCTGTCACGGCCGTTTACAGCCTCTCTGCG
CGCGGCCCGAAGGAACGCGGCGCTCTAGGTCAAGTGGATGCCGGCCGGGT
CTTGCTCGCCGTCATGGCTGCCCATCCCGACGCGCGGGATATCCAGGTCA
AGTGCTGTTTCACCCTTGCCAAGCTCGCTTGGCAGCACCCTGAGAACCGA
CAGCGGCTGGTGGCGCTGAAAGCCGCTTTGGTCGTGACGCAGGCGCTGAA
GAAGCATCCCGTGGACGTGCCCGTGCAAGTGGCAGGTGCAGCGGCGATGG
TAGCTCTCTACATGCCCTTGGCCGTTGGGCACGATTTATCGGAGAGCCGT
AACGGCAATGGCACGACCATCCTCCTCAACAAGACAGCCGTCCTCCTCAC
CTCCCCCTCTCAGGTGCAGCTTAAAGGCAGCCACCTTTCCGCGACTACCC
CCGCCGATGTCCCCACCACCTCCTCCCCCTCCACTTCCATGCAGCCACCC
CACGCAAACGGCACAGCTCTAGCAGCAAGAGAAATAGAAACTGGAGAAGC
GGCTGCAGGACGGGGTAAAGGGAGCTTTGTGGAAGGAAACGGCTATCCGG
AGGCGCAGGCGTTTCAGGCCCTTGTCTGCGCCCTGGCCGCCATCCCTGCC
GAGCCCGAGCTTGAGCTCTCCGCCTCCCCTGCCCTCCTCTTCCTCCTCGA
GGCCGTCAATGACCGACAGCCCCTTCTGGACGACGTGACTACGGCGGCAA
GGTTTTTGGCGGCGATGAGGAACTACAAGGGTGATGAGGACTCCCAAGGC
ATTTACCTCGAGGTGGCTATCCTCATAACGGATGCCCGACCTGCCGCCCG
CGAGGCGTTGCTGCAGGCTGGGATTGTCCCTCACATCCTTGAGTTAATGG
CTCGGTACCTGTCCGTGGCCCCCCTGCAAGAAAAATGTTGCATGATCTTA
GCCACCCTGACGGAGGAAAGTCCCGAGGCTGCGGAAAAAGTGTGGAATGA
AGAGTCGATGTTCGCCTTGGTGGAGGCGATGAAGGCTCACCCCAACCACT
CTGTGCTGCAGCACTTCGCCCTCTCTTGCCTACAGAACCTGGCTGAGGAG
GGTACAGCTGCCCAGCGCGCTAACCTCCTGACCCCTCCCGTCCTCTCCCT
CGTCGCCATGGCGCTTGCCTTCCACCCTCACGACGAGGACATTTCAAATG
CTGCCCTGGGGCTAGTGGTCTCCCTAGCAGCGCAGGACATCAACTCTTCC
CCTCCATGCACCACCAGCATCCACAATAAAAACAACAACAATAACAACAA
CAGCACCACCTCCACCACCACCAACACCAACAACATCCCCGATATTAACG
GCAATGGCACTCCACCTTCCTCCCATTCCTCCCCCTCCGGTCCTGCCTAT
GTTCATGCCGTTCTCCGCCTCCTCACTGCTGTCTGGAAGCACATCCACCT
CTCCCCTTCCCCTTCCTCCCTTTCGCTCTCGGCCGCGGCGACGGTGCAGC
AGCAGCAGCAGCAGCAGCAAGAGAAGAAGGAGATTGAGCGTGTGGGGGCC
CTAGGAGTCTTGCGTTGGCTGACTGTGGTGGCCCGGGACTGCGCACCCAA
CGAAGTCACCCTCCTGAGCGGTGACAACACCGTCCATGCCATGTTCGAGG
AGGTGGCCGGTCGACTCGCTACCACGCATCCCCGCCCCCACACCCACCCT
CCCTCCACCCTCATGCCTCCTCCCCCTCCGACATCTGCCTTCCTTGTCCC
CGCCTCGTCCAAGAAGCGAGCGTGTCCTTCCTCCTCCCCTCCCTCCGCCT
CCTCCTCCGCCTCCTCCTCCGACTCTTCCTCCCTTCTCCTGGCTGCGGCC
GAAGCACAAGGCAAGCGTCTGTGCCTGGACCTGGTGGCTTCCCTCCCTCA
GAAGGGGCAAGCCACCTCCTGGCCTCGGGCGTGCGGCGCCGTCGTGGAGG
GTCTGCAGGAAGGGAGGGAAGGAGGGGCGCTGGCTCTCGGAGCACTGGCT
GCTGTTGTTGCACTCGCGGAAGGAAATAAGCAAAATAAAAACGTACTGCA
GGGTTTGGGGGCAGCGAAGGGTCTCGGGGTGGTTGCGGCGAAGATGGGAG
GAAAGGAAGGAGGGAGGGAGGGAGAGGTGGTGGCCAAGGCGTTCGAGGCG
CTGCGGTAG

Synonyms

Publications