NO05G05070.1, NO05G05070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05070.1
Unique NameNO05G05070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1645
Alignment locationchr5:1323390..1325481 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1323390..1325481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05070.1 vs.
Match: XP_002947940.1 (hypothetical protein VOLCADRAFT_88352 [Volvox carteri f. nagariensis]; EFJ50928.1 hypothetical protein VOLCADRAFT_88352 [Volvox carteri f. nagariensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-8
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:  316 KLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            K+R+ DG VV++KGEK++IEK + +WDGGSRGK+ TKGKRG GF+
Sbjct:  244 KVRYLDGRVVSTKGEKFIIEKTSEEWDGGSRGKVYTKGKRGKGFI 288
The following BLAST results are available for this feature:
BLAST of NO05G05070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002947940.11.600e-864.44hypothetical protein VOLCADRAFT_88352 [Volvox cart... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05070NO05G05070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05070.1NO05G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05070.1.cds1NO05G05070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05070.1.cds2NO05G05070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05070.1.cds3NO05G05070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05070.1 ID=NO05G05070.1|Name=NO05G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
ACAGAAATACGTCAGTTTGATCAATATAAAAGCTATTCCTGCCCCGGCTA
GAGGCTACCGCCCCTCCGCCTTTACTTGTATCGATCTGAACGCACTTCGA
CTCGACACCACGGGAGGTTGCCCTTGCCCTAGCACTATTTATTACCATGG
CCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCG
GCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATAT
CGTGGACTACCTAATCAGTGTCCTCGTCGACACGGACGTGGAAGAAGAAG
ACGCATGGGGGGTCCTACAAGGATACCTTCCTGACAATAGGGAAGTAGGA
GAAGAGGCTGTTGAGGCATTACGACAGACCCTCAAGGACACTTCGATTGC
CAAGGAGATGGAGGAGGAAGCAGCGGCGGTGCGGAGGAGGGAGGCGGCAC
GAGCGGCAGCTCTAGCGGCGGCGAGCAGCAGTGACGATGGTGTGCGGACA
GGAGTGGAGGAAGAGGAGGAATGGAAGAAGGAAGAGGACGAGGAAGAGGA
GGAGGTGTTGACGGAGGCCCAGCTGCTGGACCTGGATTTCCTTCACGACT
TATTGGGCGAAGGGGGGGTCGAGGAAGAAGATGAGAGAAGCGGAAACATA
GCTGCAGCAACGACGGGGAAAACCAGCTCTTTGCCCTCTTCTTCTGTGCC
ATCCTCCTTATCTCCCTCTTCGAATTCCGTGGTAGCCTTCCCGAGGGACG
TGATAAAGTACGTGTACCAGGTGAAGTGCGGCAACACCAGGCAACGCGCG
GCGGAGGTCCTCGTCACGTCGGCATCGGAGGAGGGCATTGCATCCCTGAG
GAAGGAGCAGGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGCCAATC
GCCTCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGATTCGCA
GATCAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTACTCCTC
CTCCTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTCGGCGA
AGCGCGTACCGATCTCTATCCCTGCCCCCCCGGCGGAGAGTAAGCTCCGG
TTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAAGTATTTGATCGA
GAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGAAGATCAAGACGA
AGGGAAAGAGGGGGCCAGGATTTGTGTAGTGGAGGAAGAGGAGTAGGAAA
TTTAGTATGGAAGCGAGAGATGGTGGAAAGGGAAGATTTCTACTTGTTTG
AAAGCGATCGGCTTTGAAGCCGCCGTCCCTGTCCAGATGTGTCAAAGGGG
GCAAGCAATGCGAAAGAAGCACCGTGGCTTCCCTCTGGCGAATGGCTCGA
CGTAGAATTTGCGTCCGTACGCCCATGTGCGCGTGAAGACAAAAGACAAA
ACAGATCATGTTCCCCTTCCATAGATGATAGAGAATGGGTGACAAAATGT
ACAATAAATAGAGAATATGTACTGCAAATATCGACGCTTCCCACAAAATT
TCTATGCTCATGACGTACGCCTGTCCTTGCAGCCCCACGACCCAAGGTGC
AAGAAACTCTTCAACGAAATAAAACAGAAACATAAAAGCATTGCG
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protein sequence of NO05G05070.1

>NO05G05070.1-protein ID=NO05G05070.1-protein|Name=NO05G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MACTSDDNENAITLALRAAFYASLGSNEEEMDVNIVDYLISVLVDTDVEE
EDAWGVLQGYLPDNREVGEEAVEALRQTLKDTSIAKEMEEEAAAVRRREA
ARAAALAAASSSDDGVRTGVEEEEEWKKEEDEEEEEVLTEAQLLDLDFLH
DLLGEGGVEEEDERSGNIAAATTGKTSSLPSSSVPSSLSPSSNSVVAFPR
DVIKYVYQVKCGNTRQRAAEVLVTSASEEGIASLRKEQERYIESRALARA
NRLRDALRLKQQIVDRFADQVTFHDGNPSTTSYSSSFSSSSSSSSSSSSS
AKRVPISIPAPPAESKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIK
TKGKRGPGFV*
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mRNA from alignment at chr5:1323390..1325481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05070.1 ID=NO05G05070.1|Name=NO05G05070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2092bp|location=Sequence derived from alignment at chr5:1323390..1325481+ (Nannochloropsis oceanica)
ACAGAAATACGTCAGTTTGATCAATATAAAAGCTATTCCTGCCCCGGCTA
GAGGCTACCGCCCCTCCGCCTTTACTTGTATCGATCTGAACGCACTTCGA
CTCGACACCACGGGAGGTTGCCCTTGCCCTAGCACTATTTATTACCATGG
CCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCG
GCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATAT
CGTGGTACGTCTCTCTTCAAACTACCCCTTCCCTCCCTTCCCCTTCCCAC
TATCCTCGCCACCCTCCCGACCCCCGCATGCCATTGCTCTCCTCTCGCCA
CACTTACCACTCAAACAGACCCAAATGCTTATCTTCTTAGCTAAATCTCC
TCTTTATCTCTCCTTTTACCCAATAGGACTACCTAATCAGTGTCCTCGTC
GACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTACAAGGATACCT
TCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCATTACGACAGA
CCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGAAGCAGCGGCG
GTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGGCGGCGAGCAG
CAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAGGAATGGAAGA
AGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGCCCAGCTGCTG
GACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGGTCGAGGAAGA
AGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGGAAAACCAGCT
CTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTCTTCGAATTCC
GTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACCAGGTGAAGTG
CGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACGTCGGCATCGG
AGGAGGGCATTGCATCCCTGAGGAAGGAGCAGGTGAGTTGAAGAGGGAAA
GAAGGGGGGAAGAGGTTGGAAGGAGGAAAGTTTCCCCTGTGGGAGTGGCA
GATAGATGAAAGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGATGGAGGGTCGTCGCGATTCCGGGTAGTATTGGACG
GCTTGTGGGAGACTTCTCCGCCACCACAACAGGCTTCTTCCTGTCTCTTT
CTCTCCCAGTCATCCTTAAACTTCCCTCCCCCTCCCCTCCCCCCATTCCT
CGAATAGGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCC
TCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGATTCGCAGAT
CAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTACTCCTCCTC
CTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGC
GCGTACCGATCTCTATCCCTGCCCCCCCGGCGGAGAGTAAGCTCCGGTTC
CGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAAGTATTTGATCGAGAA
AATCACGCCCGATTGGGACGGAGGGAGCCGGGGGAAGATCAAGACGAAGG
GAAAGAGGGGGCCAGGATTTGTGTAGTGGAGGAAGAGGAGTAGGAAATTT
AGTATGGAAGCGAGAGATGGTGGAAAGGGAAGATTTCTACTTGTTTGAAA
GCGATCGGCTTTGAAGCCGCCGTCCCTGTCCAGATGTGTCAAAGGGGGCA
AGCAATGCGAAAGAAGCACCGTGGCTTCCCTCTGGCGAATGGCTCGACGT
AGAATTTGCGTCCGTACGCCCATGTGCGCGTGAAGACAAAAGACAAAACA
GATCATGTTCCCCTTCCATAGATGATAGAGAATGGGTGACAAAATGTACA
ATAAATAGAGAATATGTACTGCAAATATCGACGCTTCCCACAAAATTTCT
ATGCTCATGACGTACGCCTGTCCTTGCAGCCCCACGACCCAAGGTGCAAG
AAACTCTTCAACGAAATAAAACAGAAACATAAAAGCATTGCG
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Coding sequence (CDS) from alignment at chr5:1323390..1325481+

>NO05G05070.1 ID=NO05G05070.1|Name=NO05G05070.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr5:1323390..1325481+ (Nannochloropsis oceanica)
ATGGCCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCG
CGCGGCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGA
ATATCGTGGACTACCTAATCAGTGTCCTCGTCGACACGGACGTGGAAGAA
GAAGACGCATGGGGGGTCCTACAAGGATACCTTCCTGACAATAGGGAAGT
AGGAGAAGAGGCTGTTGAGGCATTACGACAGACCCTCAAGGACACTTCGA
TTGCCAAGGAGATGGAGGAGGAAGCAGCGGCGGTGCGGAGGAGGGAGGCG
GCACGAGCGGCAGCTCTAGCGGCGGCGAGCAGCAGTGACGATGGTGTGCG
GACAGGAGTGGAGGAAGAGGAGGAATGGAAGAAGGAAGAGGACGAGGAAG
AGGAGGAGGTGTTGACGGAGGCCCAGCTGCTGGACCTGGATTTCCTTCAC
GACTTATTGGGCGAAGGGGGGGTCGAGGAAGAAGATGAGAGAAGCGGAAA
CATAGCTGCAGCAACGACGGGGAAAACCAGCTCTTTGCCCTCTTCTTCTG
TGCCATCCTCCTTATCTCCCTCTTCGAATTCCGTGGTAGCCTTCCCGAGG
GACGTGATAAAGTACGTGTACCAGGTGAAGTGCGGCAACACCAGGCAACG
CGCGGCGGAGGTCCTCGTCACGTCGGCATCGGAGGAGGGCATTGCATCCC
TGAGGAAGGAGCAGGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGCC
AATCGCCTCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGATT
CGCAGATCAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTACT
CCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTCG
GCGAAGCGCGTACCGATCTCTATCCCTGCCCCCCCGGCGGAGAGTAAGCT
CCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAAGTATTTGA
TCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGAAGATCAAG
ACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAG
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Synonyms
Publications