NO05G04920.1, NO05G04920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04920.1
Unique NameNO05G04920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1996
Alignment locationchr5:1278279..1280604 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1278279..1280604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04920.1 vs.
Match: XP_005853983.1 (glutathione reductase (NADPH) [Nannochloropsis gaditana CCMP526]; EKU22375.1 glutathione reductase (NADPH) [Nannochloropsis gaditana CCMP526]; EWM27905.1 glutathione reductase [Nannochloropsis gaditana])

HSP 1 Score: 899.8 bits (2324), Expect = 4.100e-258
Identity = 448/538 (83.27%), Postives = 483/538 (89.78%), Query Frame = 0 
Query:    1 MILSSMRPLLNRLRLQTGRLALMAVPATAAAHSSSSSKLDGTPETSDPKQHFDYLVIGGGSGGVASARRAASYGAKVALVEYKALGGTCVNVGCVPKKVMFNTAVLAEQMQEAGNFGFYRKGPLAEVNTHDKKAVHETFGFDWKAIKDARDAYVHRLNGIYTTLLRNSKVEVLEGMARFTGPKTVSVGGKEYTADHILIATGGKPVMPQIPGVDHCIHSDGFFALEEMPKRVAVVGAGYIAVELAGIFNSLGSDTNLFVRYDGPLRPFDGLLRETLMKEMAATGLQLHKNSTPTGVVKDEKTGKLSLCLASGEVHEGFDVILLAVGRVPETEALGLASSGVAIVGGQGSKGYIKVDAHQNTSVPGVYALGDVCGKVELTPMAIAAGRRLADRLFGGMEGVKADYNDVPTVVFSHPPLGTVGLTEAEAREKYEEKDLKIYTSRFVNLFYGPWTVPPEKKPKTAMKLICVGPEEKVVGLHVIGMGADEMLQGFAVALKKGCTKADLDATLAIHPTAAEEFVTLAPWGLSGKKGEKARAKL 539
            MIL  MRPLLNRLRLQTGR+ALMA+PATAAAH SSSSKLDG  + S   QHFDYLVIGGGSGGVASARRAA+YGAKVALVEYKALGGTCVNVGCVPKKVMFNTA+LAEQMQEAG+FGFYR+GPL    T  K AV ETFGFDWK IK+ARDAYV RLNGIY TLLRNS VEVLEG ARFTGP+ V VG KEYTADHILIATGGKPVMP++PGV+HCIHSDGFFALEE+PKRVAVVGAGYIAVELAGIFNSLG+DTNLFVRYDGPLRPFD LLRETLM+EM   GL LHK+STP GV KDEKTGKLS+ L +G+ H+ FDV+LLA+GR PETE LGL + G+A V     KGYI+ DA QNTS+PGVYALGDVCGKVELTPMAIAAGRRLADRLFGG++G +ADY +VPTV+FSHPP+GTVGLTEAEARE+Y+ KDLKIYTSRFVNLFYGPW VPPE KPKTAMKLICVGPEE+VVGLHVIGMGADEMLQGFAVALKKGCTKAD DA LAIHPTAAEEFVTLAPWGLSGKKGEKARAKL
Sbjct:    1 MILPIMRPLLNRLRLQTGRIALMAIPATAAAHFSSSSKLDG--KASSEPQHFDYLVIGGGSGGVASARRAAAYGAKVALVEYKALGGTCVNVGCVPKKVMFNTAILAEQMQEAGHFGFYRRGPLTGAETGKKDAVTETFGFDWKTIKEARDAYVRRLNGIYATLLRNSTVEVLEGAARFTGPRRVQVGEKEYTADHILIATGGKPVMPKMPGVEHCIHSDGFFALEELPKRVAVVGAGYIAVELAGIFNSLGADTNLFVRYDGPLRPFDQLLRETLMQEMDHAGLHLHKHSTPAGVQKDEKTGKLSVTLTNGQEHKDFDVVLLAIGRSPETETLGLEAGGIATV---EKKGYIQADAQQNTSMPGVYALGDVCGKVELTPMAIAAGRRLADRLFGGLDGAQADYANVPTVIFSHPPIGTVGLTEAEAREQYDAKDLKIYTSRFVNLFYGPWPVPPEAKPKTAMKLICVGPEERVVGLHVIGMGADEMLQGFAVALKKGCTKADFDAALAIHPTAAEEFVTLAPWGLSGKKGEKARAKL 533
The following BLAST results are available for this feature:
BLAST of NO05G04920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853983.14.100e-25883.27glutathione reductase (NADPH) [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04920NO05G04920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04920.1NO05G04920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04920.1.cds1NO05G04920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04920.1.cds2NO05G04920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04920.1 ID=NO05G04920.1|Name=NO05G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp
GGACGAGAAAGCAAGACGACGACCTTCATGGTGGATGTCATTCGAAAAGA
AACACTCGTGTGTACTCTCCCTCGCACTCATGCCCGTGCTGCCTTCGACT
TCCCTTTGTCGCCCGCTCTTGCTCATATGATGGACACAGGTCCGCTCGCT
TTGATTCATCAGCTGCCAGCTTTTGACCTCCCCTCCTCCTTCCATATTCG
CATTCTTCGCCCTATCAATCCGAGGCATCTTCCCAGAGGTTCACTCCACA
CCCTTGTGTATGATCCTATCGAGCATGCGTCCTTTGCTGAATCGCCTTCG
CCTTCAAACGGGCCGCTTGGCCCTCATGGCCGTCCCTGCCACGGCAGCCG
CCCATTCCTCCTCTTCTTCCAAGCTTGACGGGACGCCCGAGACATCCGAC
CCCAAACAGCATTTCGATTACCTCGTCATCGGTGGCGGCAGCGGTGGGGT
CGCCTCCGCCCGTCGTGCCGCCTCCTACGGGGCAAAAGTCGCCCTGGTAG
AGTACAAGGCCCTGGGAGGGACGTGCGTGAATGTTGGATGTGTTCCGAAA
AAGGTTATGTTTAATACAGCGGTCTTGGCAGAGCAAATGCAGGAGGCGGG
TAATTTTGGGTTCTATCGAAAGGGTCCCCTTGCGGAGGTGAATACTCATG
ACAAGAAAGCCGTCCATGAGACGTTCGGGTTTGATTGGAAGGCGATTAAG
GATGCAAGGGACGCGTACGTGCATCGGCTAAACGGAATCTACACCACCTT
GTTGCGGAACAGCAAGGTGGAGGTGTTGGAGGGCATGGCGAGGTTTACGG
GGCCCAAGACCGTGAGTGTGGGGGGGAAGGAGTATACGGCGGACCACATT
TTGATTGCCACGGGGGGGAAACCGGTAATGCCTCAGATCCCAGGGGTGGA
TCATTGTATCCACTCGGACGGGTTCTTCGCGTTGGAGGAGATGCCGAAGC
GGGTGGCGGTGGTGGGGGCGGGTTATATTGCGGTGGAGCTGGCGGGCATC
TTTAATTCGCTGGGGTCGGATACGAATTTGTTCGTGAGGTATGATGGACC
GTTACGGCCGTTTGATGGACTGTTGCGGGAGACGTTGATGAAGGAGATGG
CGGCGACGGGGTTGCAGCTCCACAAGAACAGCACGCCCACAGGGGTGGTG
AAGGATGAAAAGACAGGGAAACTATCCCTTTGTCTGGCCAGTGGCGAGGT
GCACGAGGGTTTCGACGTGATATTGCTCGCCGTCGGTCGTGTCCCAGAAA
CGGAGGCCTTGGGGTTAGCGTCCTCGGGGGTGGCAATTGTGGGAGGGCAG
GGGAGCAAAGGCTACATCAAGGTGGATGCCCACCAGAACACGTCAGTCCC
GGGCGTGTACGCCCTGGGAGATGTTTGTGGCAAGGTGGAATTGACCCCGA
TGGCGATCGCGGCCGGGAGGAGGCTGGCAGATCGATTATTTGGGGGAATG
GAAGGGGTCAAGGCTGACTATAACGATGTCCCGACGGTGGTGTTCTCGCA
CCCACCCCTTGGCACGGTGGGACTGACGGAGGCGGAGGCACGGGAGAAGT
ACGAGGAAAAGGACTTGAAGATTTACACCAGTCGGTTCGTGAACTTGTTC
TATGGCCCATGGACGGTCCCGCCTGAGAAGAAGCCCAAGACGGCGATGAA
ACTGATTTGTGTCGGTCCCGAGGAGAAGGTGGTGGGCCTGCACGTGATTG
GGATGGGGGCGGATGAGATGTTGCAAGGTTTCGCGGTGGCTTTGAAGAAA
GGGTGTACCAAGGCGGATTTGGATGCGACCTTGGCAATCCACCCGACGGC
TGCGGAAGAGTTTGTGACGCTGGCGCCGTGGGGATTGAGTGGGAAGAAAG
GAGAGAAGGCGAGGGCGAAGCTTTAAGGTGGAGGAAGGAGGGAAGGACTG
AGGGACGGATGGAGGGACGGAGGGAGAAAGGGGAAAGAGAAGGGAAGAAA
TGGCAACGCACCGAAGCGTTCTAAATCAATGGTATTGAACGTTAAT
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protein sequence of NO05G04920.1

>NO05G04920.1-protein ID=NO05G04920.1-protein|Name=NO05G04920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MILSSMRPLLNRLRLQTGRLALMAVPATAAAHSSSSSKLDGTPETSDPKQ
HFDYLVIGGGSGGVASARRAASYGAKVALVEYKALGGTCVNVGCVPKKVM
FNTAVLAEQMQEAGNFGFYRKGPLAEVNTHDKKAVHETFGFDWKAIKDAR
DAYVHRLNGIYTTLLRNSKVEVLEGMARFTGPKTVSVGGKEYTADHILIA
TGGKPVMPQIPGVDHCIHSDGFFALEEMPKRVAVVGAGYIAVELAGIFNS
LGSDTNLFVRYDGPLRPFDGLLRETLMKEMAATGLQLHKNSTPTGVVKDE
KTGKLSLCLASGEVHEGFDVILLAVGRVPETEALGLASSGVAIVGGQGSK
GYIKVDAHQNTSVPGVYALGDVCGKVELTPMAIAAGRRLADRLFGGMEGV
KADYNDVPTVVFSHPPLGTVGLTEAEAREKYEEKDLKIYTSRFVNLFYGP
WTVPPEKKPKTAMKLICVGPEEKVVGLHVIGMGADEMLQGFAVALKKGCT
KADLDATLAIHPTAAEEFVTLAPWGLSGKKGEKARAKL*
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mRNA from alignment at chr5:1278279..1280604+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04920.1 ID=NO05G04920.1|Name=NO05G04920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp|location=Sequence derived from alignment at chr5:1278279..1280604+ (Nannochloropsis oceanica)
GGACGAGAAAGCAAGACGACGACCTTCATGGTGGATGTCATTCGAAAAGA
AACACTCGTGTGTACTCTCCCTCGCACTCATGCCCGTGCTGCCTTCGACT
TCCCTTTGTCGCCCGCTCTTGCTCATATGATGGACACAGGTCCGCTCGCT
TTGATTCATCAGCTGCCAGCTTTTGACCTCCCCTCCTCCTTCCATATTCG
CATTCTTCGCCCTATCAATCCGAGGCATCTTCCCAGAGGTTCACTCCACA
CCCTTGTGTATGATCCTATCGAGCATGCGTCCTTTGCTGAATCGCCTTCG
CCTTCAAACGGGCCGCTTGGCCCTCATGGCCGTCCCTGCCACGGCAGCCG
CCCATTCCTCCTCTTCTTCCAAGCTTGACGGGACGCCCGAGGTACGTATG
ATATGTGCTTACGAAGGACACCTTTTGATTATTCTTATCCTATGGTGATT
CTTTTATGACATGTGTGACGATGGCAGGGAATATATGTACTCATGAATGC
CTGCCATCGCGTAAATTGTGGTGCAGGGACGGCCCAACCCCTTCTTCTCT
GTCTCCCGTACTCCATCTCCCTCCCTTGAGAAATCTATCACTCACAATTT
AGGACTCAATAATCCCACATAAGTAGACCACGCCGAGCATCTCCTTATTC
CTTAGCTCCTTCCTTCCTATCCTTTCTAATTCCCTCCTCCCCACCTCTCC
TTCCCTATGTCTGCCTGAAAGACATCCGACCCCAAACAGCATTTCGATTA
CCTCGTCATCGGTGGCGGCAGCGGTGGGGTCGCCTCCGCCCGTCGTGCCG
CCTCCTACGGGGCAAAAGTCGCCCTGGTAGAGTACAAGGCCCTGGGAGGG
ACGTGCGTGAATGTTGGATGTGTTCCGAAAAAGGTTATGTTTAATACAGC
GGTCTTGGCAGAGCAAATGCAGGAGGCGGGTAATTTTGGGTTCTATCGAA
AGGGTCCCCTTGCGGAGGTGAATACTCATGACAAGAAAGCCGTCCATGAG
ACGTTCGGGTTTGATTGGAAGGCGATTAAGGATGCAAGGGACGCGTACGT
GCATCGGCTAAACGGAATCTACACCACCTTGTTGCGGAACAGCAAGGTGG
AGGTGTTGGAGGGCATGGCGAGGTTTACGGGGCCCAAGACCGTGAGTGTG
GGGGGGAAGGAGTATACGGCGGACCACATTTTGATTGCCACGGGGGGGAA
ACCGGTAATGCCTCAGATCCCAGGGGTGGATCATTGTATCCACTCGGACG
GGTTCTTCGCGTTGGAGGAGATGCCGAAGCGGGTGGCGGTGGTGGGGGCG
GGTTATATTGCGGTGGAGCTGGCGGGCATCTTTAATTCGCTGGGGTCGGA
TACGAATTTGTTCGTGAGGTATGATGGACCGTTACGGCCGTTTGATGGAC
TGTTGCGGGAGACGTTGATGAAGGAGATGGCGGCGACGGGGTTGCAGCTC
CACAAGAACAGCACGCCCACAGGGGTGGTGAAGGATGAAAAGACAGGGAA
ACTATCCCTTTGTCTGGCCAGTGGCGAGGTGCACGAGGGTTTCGACGTGA
TATTGCTCGCCGTCGGTCGTGTCCCAGAAACGGAGGCCTTGGGGTTAGCG
TCCTCGGGGGTGGCAATTGTGGGAGGGCAGGGGAGCAAAGGCTACATCAA
GGTGGATGCCCACCAGAACACGTCAGTCCCGGGCGTGTACGCCCTGGGAG
ATGTTTGTGGCAAGGTGGAATTGACCCCGATGGCGATCGCGGCCGGGAGG
AGGCTGGCAGATCGATTATTTGGGGGAATGGAAGGGGTCAAGGCTGACTA
TAACGATGTCCCGACGGTGGTGTTCTCGCACCCACCCCTTGGCACGGTGG
GACTGACGGAGGCGGAGGCACGGGAGAAGTACGAGGAAAAGGACTTGAAG
ATTTACACCAGTCGGTTCGTGAACTTGTTCTATGGCCCATGGACGGTCCC
GCCTGAGAAGAAGCCCAAGACGGCGATGAAACTGATTTGTGTCGGTCCCG
AGGAGAAGGTGGTGGGCCTGCACGTGATTGGGATGGGGGCGGATGAGATG
TTGCAAGGTTTCGCGGTGGCTTTGAAGAAAGGGTGTACCAAGGCGGATTT
GGATGCGACCTTGGCAATCCACCCGACGGCTGCGGAAGAGTTTGTGACGC
TGGCGCCGTGGGGATTGAGTGGGAAGAAAGGAGAGAAGGCGAGGGCGAAG
CTTTAAGGTGGAGGAAGGAGGGAAGGACTGAGGGACGGATGGAGGGACGG
AGGGAGAAAGGGGAAAGAGAAGGGAAGAAATGGCAACGCACCGAAGCGTT
CTAAATCAATGGTATTGAACGTTAAT
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Coding sequence (CDS) from alignment at chr5:1278279..1280604+

>NO05G04920.1 ID=NO05G04920.1|Name=NO05G04920.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr5:1278279..1280604+ (Nannochloropsis oceanica)
ATGATCCTATCGAGCATGCGTCCTTTGCTGAATCGCCTTCGCCTTCAAAC
GGGCCGCTTGGCCCTCATGGCCGTCCCTGCCACGGCAGCCGCCCATTCCT
CCTCTTCTTCCAAGCTTGACGGGACGCCCGAGACATCCGACCCCAAACAG
CATTTCGATTACCTCGTCATCGGTGGCGGCAGCGGTGGGGTCGCCTCCGC
CCGTCGTGCCGCCTCCTACGGGGCAAAAGTCGCCCTGGTAGAGTACAAGG
CCCTGGGAGGGACGTGCGTGAATGTTGGATGTGTTCCGAAAAAGGTTATG
TTTAATACAGCGGTCTTGGCAGAGCAAATGCAGGAGGCGGGTAATTTTGG
GTTCTATCGAAAGGGTCCCCTTGCGGAGGTGAATACTCATGACAAGAAAG
CCGTCCATGAGACGTTCGGGTTTGATTGGAAGGCGATTAAGGATGCAAGG
GACGCGTACGTGCATCGGCTAAACGGAATCTACACCACCTTGTTGCGGAA
CAGCAAGGTGGAGGTGTTGGAGGGCATGGCGAGGTTTACGGGGCCCAAGA
CCGTGAGTGTGGGGGGGAAGGAGTATACGGCGGACCACATTTTGATTGCC
ACGGGGGGGAAACCGGTAATGCCTCAGATCCCAGGGGTGGATCATTGTAT
CCACTCGGACGGGTTCTTCGCGTTGGAGGAGATGCCGAAGCGGGTGGCGG
TGGTGGGGGCGGGTTATATTGCGGTGGAGCTGGCGGGCATCTTTAATTCG
CTGGGGTCGGATACGAATTTGTTCGTGAGGTATGATGGACCGTTACGGCC
GTTTGATGGACTGTTGCGGGAGACGTTGATGAAGGAGATGGCGGCGACGG
GGTTGCAGCTCCACAAGAACAGCACGCCCACAGGGGTGGTGAAGGATGAA
AAGACAGGGAAACTATCCCTTTGTCTGGCCAGTGGCGAGGTGCACGAGGG
TTTCGACGTGATATTGCTCGCCGTCGGTCGTGTCCCAGAAACGGAGGCCT
TGGGGTTAGCGTCCTCGGGGGTGGCAATTGTGGGAGGGCAGGGGAGCAAA
GGCTACATCAAGGTGGATGCCCACCAGAACACGTCAGTCCCGGGCGTGTA
CGCCCTGGGAGATGTTTGTGGCAAGGTGGAATTGACCCCGATGGCGATCG
CGGCCGGGAGGAGGCTGGCAGATCGATTATTTGGGGGAATGGAAGGGGTC
AAGGCTGACTATAACGATGTCCCGACGGTGGTGTTCTCGCACCCACCCCT
TGGCACGGTGGGACTGACGGAGGCGGAGGCACGGGAGAAGTACGAGGAAA
AGGACTTGAAGATTTACACCAGTCGGTTCGTGAACTTGTTCTATGGCCCA
TGGACGGTCCCGCCTGAGAAGAAGCCCAAGACGGCGATGAAACTGATTTG
TGTCGGTCCCGAGGAGAAGGTGGTGGGCCTGCACGTGATTGGGATGGGGG
CGGATGAGATGTTGCAAGGTTTCGCGGTGGCTTTGAAGAAAGGGTGTACC
AAGGCGGATTTGGATGCGACCTTGGCAATCCACCCGACGGCTGCGGAAGA
GTTTGTGACGCTGGCGCCGTGGGGATTGAGTGGGAAGAAAGGAGAGAAGG
CGAGGGCGAAGCTTTAA
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Synonyms
Publications