NO05G04860.1, NO05G04860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04860.1
Unique NameNO05G04860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr5:1261520..1262751 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1261520..1262751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04860.1 vs.
Match: EWM27912.1 (hypothetical protein Naga_100267g5 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 1.500e-21
Identity = 90/229 (39.30%), Postives = 117/229 (51.09%), Query Frame = 0 
Query:   87 VSNEEGIPSSEILEHATALDEVIVKEQEEEGEEEIAVEIDMHASAARQQLQPISRSWLQGHDDVYTAAGDNCRRTRSFSSSFLLPPSLPTTTLLTEMRATLRGTRPAPPPPPSPPSPPSPAARAASSTAGTALGKINSILHLPPTRQQHQQPNPK-QGQRLRAIPASQ----KFVLCMSCSNEEWLQVPQTAKYVRCPICTSITIALTSNTRFPVREERRTGGGPCTRL 311
            +    GIPSSE+    T    V+    ++E ++EI V  D HAS A +Q  P S S  QG   +     DN       +S  L+   L   T L+ + ATLRGTRP      +  SPP P A                  ++P +     +P  + + +RL A+PA+     K+V CMSC  EEWL+VP  AKYVRCP C SITIAL SN+RFP R+ RR  G PCTRL
Sbjct:    1 MQGSRGIPSSEMNARVTGAGNVVAGSADDEEDDEIIV--DQHASVAPRQQHPASISH-QGDPPL-----DNPLHATHAAS--LVSEDLSGPTSLSSILATLRGTRPPVAAVATATSPPPPQAPQ----------------NIPASANTFPRPRMEPERRRLHALPATTAKGYKYVQCMSCVEEEWLRVPVAAKYVRCPTCGSITIALASNSRFPARQGRREEGNPCTRL 203
The following BLAST results are available for this feature:
BLAST of NO05G04860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27912.11.500e-2139.30hypothetical protein Naga_100267g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04860NO05G04860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04860.1NO05G04860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04860.1.cds1NO05G04860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04860.1.cds2NO05G04860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04860.1 ID=NO05G04860.1|Name=NO05G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ACGACAGATATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTA
TACGTCAATGGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTT
GGCTCCGCGAGGAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGG
TCCCTGTTTTGTGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCA
TTTGCATCCCCACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGT
ACATGCAGCAACAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAA
ATACTAGAGCATGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGA
AGAGGAGGGTGAGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCG
CGGCACGACAGCAACTGCAACCTATCTCTCGATCATGGTTGCAGGGACAC
GACGACGTCTACACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTT
TTCTTCTTCCTTTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAA
CCGAAATGCGGGCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCT
CCTTCTCCTCCTTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTAC
CGCTGGAACTGCTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTA
CCCGCCAACAGCATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGC
GCCATTCCCGCCTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGA
AGAGTGGCTTCAAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCT
GCACCAGCATAACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGA
GAGGAAAGGAGGACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTT
TTCGATGCTTCAAGGGGGGGGAGGGGGGCCGGCGTCATTATAA
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protein sequence of NO05G04860.1

>NO05G04860.1-protein ID=NO05G04860.1-protein|Name=NO05G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSRHTAASRALQHYTSMAQTEDKENAGQVAWLREENDYYDDEDEQPRSLF
CGGGMGALCAAIHHLHPHEAATPAAAKKKEYMQQQHVSNEEGIPSSEILE
HATALDEVIVKEQEEEGEEEIAVEIDMHASAARQQLQPISRSWLQGHDDV
YTAAGDNCRRTRSFSSSFLLPPSLPTTTLLTEMRATLRGTRPAPPPPPSP
PSPPSPAARAASSTAGTALGKINSILHLPPTRQQHQQPNPKQGQRLRAIP
ASQKFVLCMSCSNEEWLQVPQTAKYVRCPICTSITIALTSNTRFPVREER
RTGGGPCTRLMTFFSMLQGGGGGPASL*
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mRNA from alignment at chr5:1261520..1262751+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04860.1 ID=NO05G04860.1|Name=NO05G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp|location=Sequence derived from alignment at chr5:1261520..1262751+ (Nannochloropsis oceanica)
ACGACAGATATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTA
TACGTCAATGGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTT
GGCTCGTAAGTATATGTGCAACCTGAGCTCGCACGACTCTAGCTATCTAT
TCCACATCATTTAGGATTATAGAACGTATACCCTTGGCACAAACATCTGT
TACGTATGTTTCTCATAAATTACAGATTTATGGATACGATTTTAGACAGA
GCTTTTCCCTACCTTCCAAGAAAGAGGCCCCCTATTCACGTTCTCTCTCT
TTATCCAACCCACCCAACCAACCGACATCTTGCTTTTACTACAGCGCGAG
GAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGGTCCCTGTTTTG
TGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCATTTGCATCCCC
ACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGCAA
CAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAAATACTAGAGCA
TGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGGTG
AGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCGCGGCACGACAG
CAACTGCAACCTATCTCTCGATCATGGTTGCAGGGACACGACGACGTCTA
CACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTCCT
TTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAACCGAAATGCGG
GCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCTCC
TTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAACTG
CTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTACCCGCCAACAG
CATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGCGCCATTCCCGC
CTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGAAGAGTGGCTTC
AAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCTGCACCAGCATA
ACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGAGAGGAAAGGAG
GACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTTTTCGATGCTTC
AAGGGGGGGGAGGGGGGCCGGCGTCATTATAA
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Coding sequence (CDS) from alignment at chr5:1261520..1262751+

>NO05G04860.1 ID=NO05G04860.1|Name=NO05G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr5:1261520..1262751+ (Nannochloropsis oceanica)
ATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTATACGTCAAT
GGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTTGGCTCCGCG
AGGAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGGTCCCTGTTT
TGTGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCATTTGCATCC
CCACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGC
AACAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAAATACTAGAG
CATGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGG
TGAGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCGCGGCACGAC
AGCAACTGCAACCTATCTCTCGATCATGGTTGCAGGGACACGACGACGTC
TACACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTC
CTTTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAACCGAAATGC
GGGCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCT
CCTTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAAC
TGCTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTACCCGCCAAC
AGCATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGCGCCATTCCC
GCCTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGAAGAGTGGCT
TCAAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCTGCACCAGCA
TAACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGAGAGGAAAGG
AGGACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTTTTCGATGCT
TCAAGGGGGGGGAGGGGGGCCGGCGTCATTATAA
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Synonyms
Publications