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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1225401..1228455 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04710.3 vs.
Match: EWM27960.1 (NMD3 family protein [Nannochloropsis gaditana]) HSP 1 Score: 651.0 bits (1678), Expect = 3.400e-183 Identity = 356/556 (64.03%), Postives = 440/556 (79.14%), Query Frame = 0
Query: 1 MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGGGTGGEAGGGAGGGGMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVLLLRGGGGREGGTGGGLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGREG-GRGGGGEGQQQQQQQQQQHA-AAKWGLAEVEVVKTSDFGVRDVSYRVMTHLGHVLQVGDTVLGYDLVNATALGGREEELQGLRYDPPDVVLVKKVDVEGKSAKKEKKRLKRLRSRRAARAAGKEEVRRKEREREKREGRREGGGEDEGEEAEFLAFAAELEEDFDMQALLSQQENEAKRWLGEKEEGEDDVDKGGGRDHEEDFEEEG 555
ME T IPLTRTAARVLCPLCGLSMESNAANRCGNCVR+EI+LQ ++ P PLIQCK CF W+ KSKHWVAA+LESRELL LVLKF+PGL KGG +G G G MEVVEAGWIWTEPHSKRL++KLTVRKEVLNG+ VQQRVQAEFVVRT+QC+ACAL++TEQ WKAVCQ+RQRV HKRTFFFLEQLLLAR+MESK+LD+EL + G+DLYF DKNTA+QFL+FLQ VPMR+KT+RKL++EDRQNNVHRSQWSM+V+IVPLCKDDL L G GGG+QG VLVSRVT+VV LD TLK EM+A +Y++ P+EC+M S DLI YEVLDV+L+ R G G+GG +GQ++ + + + KW LAEVE++K+SDFGVRDV++RV++HLGH+L VGDTVLGYDL ATALG RE +G++++PPDVVLV++VDVE K AK+E++RL+RL++RRA RAA +E E + R+E +E EA+FLAFA ELEED +MQAL++++E+ A++ + +EEGE G + E +EE G
Sbjct: 1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKGG-----SGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDLCFLPPG--------GGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIKSSDFGVRDVTHRVVSHLGHLLAVGDTVLGYDLGTATALGEREGGWRGMKHEPPDVVLVRRVDVEKKGAKRERRRLRRLQARRARRAAERE--GNGEGAGARGRDRKEEVEGEEKAEADFLAFAEELEEDLEMQALIAREESAARQRMAMEEEGE------GWEEEERGWEELG 535
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04710.3 ID=NO05G04710.3|Name=NO05G04710.3|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp ATCTAATGCCGCCCATTCGCCCTTCGATCGCAAGACTCAGCGATGAGCCT GAGATGCTACGGGGGAGGAGAAGATTAAGTGGCCCTCATACCACCTTTTC AATTACCAGCACAGATAGAAGCGCCAGCCATACTTCTCTTGGTTGCATGC CCGCGGAGCCTTGGACTGGACGACAATTGGTATGACACGGTTATCCTGTC GACAATGACGGGACGGCTCGTAATGTCAAACTGTAGCATCACCAGCTTCA GCGCCGTGGCCCGGGCACGCCCCAAGCTCTAACATGAAGCAGCCCATTGA CATGATAATGCTTGTGGCAGCGTGGGCATCTGTTTTGTAATTGTGCCAAT TGACAGTGGCTGTCCAATGCTCATTAAGCCCGCACCACGTTCCCTTGACT ACAGCCACGGCCACGTTTCTCTGCTTGTTGCCCTTTGTATCGTGCGCTTT CTTTCGAGGAGGCACAACGAGGAGGGTTTACGGTGGTGCAACTTGTCGCG ACTACCCTTTTGCACACACCCCTTCCCATATTCTCAGTCCCACTCCCCCC CTCCCTTCCGTCAATCATCTCTGTATCCAGGTTTCACGACCCCCAATCAT GGAAGCGACCGAAATTCCTCTCACTAGGACGGCAGCCCGTGTCCTCTGCC CCCTCTGTGGTCTGTCCATGGAGAGCAATGCCGCCAACCGTTGTGGGAAC TGTGTCCGAAGCGAAATCAACCTTCAAGCAGATGTCGCGCCCGTGGGGCC TTTGATTCAGTGCAAAGGCTGTTTCAAATGGCGGACGAAGTCGAAACATT GGGTGGCGGCTGACTTGGAGTCAAGAGAACTTTTGACACTTGTCCTCAAA TTTTTGCCAGGACTGCAAAAGGGGGGAGGGACCGGGGGAGAAGCCGGGGG AGGGGCCGGGGGAGGAGGGATGGAAGTGGTGGAGGCGGGATGGATTTGGA CGGAGCCGCATTCGAAGCGGCTGAGGGTGAAACTGACGGTGAGGAAGGAA GTGTTGAACGGGATCACTGTGCAACAGCGGGTGCAGGCGGAGTTTGTGGT GCGGACGATGCAGTGCGAAGCCTGCGCGCTAACCTTCACGGAACAAACCT GGAAGGCTGTCTGCCAAGTGCGTCAACGCGTGGAGCACAAACGCACCTTT TTTTTCCTGGAGCAACTGCTGCTTGCTCGTCGCATGGAAAGCAAAGTCCT CGATATCGAGCTGGTCAAAGATGGCCTCGATCTATACTTCAGTGATAAGA ATACCGCGGTGCAATTCTTGTCCTTCTTGCAGGCCGTCGTCCCGATGCGG ACCAAAACGAGCCGGAAGCTTGTGTCGGAAGATAGGCAAAATAACGTGCA CAGAAGTCAATGGTCCATGGCTGTGGAAATCGTGCCCTTGTGCAAGGATG ACTTGGTGTTGTTGTTGCGAGGGGGCGGAGGGAGGGAAGGAGGGACAGGC GGGGGGTTGCAGGGCTTCGTGCTGGTGTCGCGGGTGACGAGTGTGGTCCA TTTGCTCGATGTCAGCACGTTGAAGAGGGCGGAGATGTCGGCAACAAGGT ATTTCCAGCGGCCTCTGGAGTGTGTCATGACCAGTAAGGACCTCATTTCG TATGAGGTTCTGGATGTAGATCTGGTGGGCGGGAGAGAGGGAGGGAGGGG TGGAGGAGGAGAAGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACG CAGCGGCGAAGTGGGGATTGGCAGAGGTGGAGGTTGTCAAGACGTCGGAC TTCGGAGTGCGTGATGTGAGCTATCGAGTCATGACGCACTTGGGCCACGT GTTGCAGGTGGGCGACACGGTCCTCGGGTATGACCTCGTGAACGCCACGG CCTTGGGCGGGAGGGAGGAAGAGTTGCAGGGGCTGCGGTACGATCCTCCA GATGTGGTACTAGTCAAGAAAGTGGACGTGGAGGGGAAGAGCGCAAAAAA AGAGAAGAAGAGATTGAAGCGCCTGCGGTCAAGAAGAGCGGCACGGGCCG CGGGGAAAGAGGAGGTGAGGAGGAAGGAGAGGGAAAGGGAGAAGAGGGAG GGAAGGAGGGAAGGAGGGGGGGAAGATGAGGGGGAGGAGGCAGAGTTTTT GGCGTTTGCGGCGGAATTGGAGGAAGACTTCGATATGCAGGCTCTGTTGT CGCAGCAGGAGAATGAGGCGAAGAGGTGGTTGGGGGAAAAGGAGGAGGGG GAAGATGACGTAGACAAGGGGGGGGGGAGGGATCACGAGGAGGATTTCGA GGAGGAAGGGTAGTTTTAGAAAGAAGAAATTGGAGCAAAGGAAGGGAGGA ACAAGTGGAAATGTGAGTGTATACAATTAGGCGCAGCGTTGTCGTTGTCA AGAAGGTGGTTGACAACAGGATGAGTTAGTTTGCAGACAGGGAAGGAATG TGAGGGGGCCCAATATATTGATAACCGCTCTATGGTGACGACAATTGAAA GACGGCAACAACAACAAAATGAACAGCACCCACAAAAGGACTAATCCCC back to topprotein sequence of NO05G04710.3 >NO05G04710.3-protein ID=NO05G04710.3-protein|Name=NO05G04710.3|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVG PLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGGGTGGEAG GGAGGGGMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFV VRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKV LDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNV HRSQWSMAVEIVPLCKDDLVLLLRGGGGREGGTGGGLQGFVLVSRVTSVV HLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGREGGR GGGGEGQQQQQQQQQQHAAAKWGLAEVEVVKTSDFGVRDVSYRVMTHLGH VLQVGDTVLGYDLVNATALGGREEELQGLRYDPPDVVLVKKVDVEGKSAK KEKKRLKRLRSRRAARAAGKEEVRRKEREREKREGRREGGGEDEGEEAEF LAFAAELEEDFDMQALLSQQENEAKRWLGEKEEGEDDVDKGGGRDHEEDF EEEG* back to topmRNA from alignment at chr5:1225401..1228455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04710.3 ID=NO05G04710.3|Name=NO05G04710.3|organism=Nannochloropsis oceanica|type=mRNA|length=3055bp|location=Sequence derived from alignment at chr5:1225401..1228455- (Nannochloropsis oceanica) ATCTAATGCCGCCCATTCGCCCTTCGATCGCAAGACTCAGCGATGAGCCT
GAGATGCTACGGGGGAGGAGAAGATTAAGTGGCCCTCATACCACCTTTTC
AATTACCAGCACAGATAGAAGCGCCAGCCATACTTCTCTTGGTTGCATGC
CCGCGGAGCCTTGGACTGGACGACAATTGGTATGACACGGTTATCCTGTC
GACAATGACGGGACGGCTCGTAATGTCAAACTGTAGCATCACCAGCTTCA
GCGCCGTGGCCCGGGCACGCCCCAAGCTCTAACATGAAGCAGCCCATTGA
CATGATAATGCTTGTGGCAGCGTGGGCATCTGTTTTGTAATTGTGCCAAT
TGACAGTGGCTGTCCAATGCTCATTAAGCCCGCACCACGTTCCCTTGACT
ACAGCCACGGCCACGTTTCTCTGCTTGTTGCCCTTTGTATCGTGCGCTTT
CTTTCGAGGAGGCACAACGAGGAGGGTTTACGGTGGTGCAACTTGTCGCG
ACTACCCTTTTGCACACACCCCTTCCCATATTCTCAGTCCCACTCCCCCC
CTCCCTTCCGTCAATCATCTCTGTATCCAGGTTTCACGACCCCCAATCAT
GGAAGCGACCGAAATTCCTCTCACTAGGACGGCAGCCCGTGTCCTCTGCC
CCCTCTGTGGTCTGTCCATGGAGAGCAATGCCGCCAACCGTTGTGGGAAC
TGTGTCCGAAGCGAAATCAACCTTCAAGCAGATGTCGCGCCCGTGGGGCC
TTTGATTCAGTGCAAAGGCTGTTTCAAATGGCGGACGAAGTCGAAACATT
GGGTGGCGGCTGACTTGGAGTCAAGAGAACTTTTGACACTTGTCCTCAAA
TTTTTGCCAGGACTGCAAAAGGGGGGAGGGACCGGGGGAGAAGCCGGGGG
AGGGGCCGGGGGAGGAGGGATGGAAGTGGTGGAGGCGGGATGGATTTGGA
CGGAGCCGCATTCGAAGCGGCTGAGGGTGAAACTGACGGTGAGGAAGGAA
GTGTTGAACGGGATCACTGTGCAACAGCGGGTGCAGGCGGAGTTTGTGGT
GCGGACGATGCAGGTGAAGATGATGGGAGGGAGGGAGAGGAAGGGAGGGG
GAGAGGTAGAGATAGGCTTATATAGTTACGGCATCGTCCAGATTTGGTGC
TTGCCTCTATTACATTAAGTTGGTTTATGAAAAGACAAAGATGATTATAA
CTCATGCAACCGCTCACCCTATCTCTCCCTCGCTCCTTCCCTCGCTCCCT
CCCTCACCTTCCCCTCCCCTTCCTCAGTGCGAAGCCTGCGCGCTAACCTT
CACGGAACAAACCTGGAAGGCTGTCTGCCAAGTGCGTCAACGCGTGGAGC
ACAAACGCACCTTTTTTTTCCTGGAGCAACTGCTGCTTGCTCGTCGCATG
GAAAGCAAAGTCCTCGATATCGAGCTGGTCAAAGATGGCCTCGATCTATA
CTTCAGTGATAAGAATACCGCGGTGCAATTCTTGTCCTTCTTGCAGGCCG
TCGTCCCGATGCGGACCAAAACGAGCCGGAAGCTTGTGTCGGAAGATAGG
CAAAATAACGTGCACAGAAGTCAATGGTCCATGGCTGTGGAAATCGTGCC
CTTGTGCAAGGATGACTTGGTGTTGTTGTTGCGAGGGGGCGGAGGGAGGG
AAGGAGGGACAGGCGGGGGGTTGCAGGGCTTCGTGCTGGTGTCGCGGGTG
ACGAGTGTGGTCCATTTGCTCGATGTCAGCACGTTGAAGAGGGCGGAGAT
GTCGGCAACAAGGTATTTCCAGCGGCCTCTGGAGTGTGTCATGACCAGTA
AGGACCTCATTTCGTATGAGGTTCTGGATGTAGATCTGGTGGGCGGGAGA
GAGGGAGGGAGGGGTGGAGGAGGAGAAGGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACGCAGCGGCGAAGTGGGGATTGGCAGAGGTGGAGGTTG
TCAAGGTAGGTATAGAGGGAGGGGAAGGGGAGGATGGGGGGAGGAAGAGG
CTTGATTGCCTAGCAGTATGAATGTACATATAAATAGTTCGACTATGTAC
ATAAATCTATACATGTAGATTTAGTTCGACAAGACCCATGAGAGTCTTGA
TAATTCCTTATGCACAGACGTCGGACTTCGGAGTGCGTGATGTGAGCTAT
CGAGTCATGACGCACTTGGGCCACGTGTTGCAGGTTGGAAGGAGGGCGGG
AGGGAAGGAAGAAAGGGAGGAGGGAGGGGGGGTTGTGAATGGGGGGAAAT
CGGCGCATGAAAGAAAAACCACGTCAAAAAAATCACCCTCTCATTCACCT
CCATGTCTCCCTCCTTTTATCCCGTCCTCCCTCCTCCCCTCCTCCCCTCC
TCTCCTCCTCCAGGTGGGCGACACGGTCCTCGGGTATGACCTCGTGAACG
CCACGGCCTTGGGCGGGAGGGAGGAAGAGTTGCAGGGGCTGCGGTACGAT
CCTCCAGATGTGGTACTAGTCAAGAAAGTGGACGTGGAGGGGAAGAGCGC
AAAAAAAGAGAAGAAGAGATTGAAGCGCCTGCGGTCAAGAAGAGCGGCAC
GGGCCGCGGGGAAAGAGGAGGTGAGGAGGAAGGAGAGGGAAAGGGAGAAG
AGGGAGGGAAGGAGGGAAGGAGGGGGGGAAGATGAGGGGGAGGAGGCAGA
GTTTTTGGCGTTTGCGGCGGAATTGGAGGAAGACTTCGATATGCAGGCTC
TGTTGTCGCAGCAGGAGAATGAGGCGAAGAGGTGGTTGGGGGAAAAGGAG
GAGGGGGAAGATGACGTAGACAAGGGGGGGGGGAGGGATCACGAGGAGGA
TTTCGAGGAGGAAGGGTAGTTTTAGAAAGAAGAAATTGGAGCAAAGGAAG
GGAGGAACAAGTGGAAATGTGAGTGTATACAATTAGGCGCAGCGTTGTCG
TTGTCAAGAAGGTGGTTGACAACAGGATGAGTTAGTTTGCAGACAGGGAA
GGAATGTGAGGGGGCCCAATATATTGATAACCGCTCTATGGTGACGACAA
TTGAAAGACGGCAACAACAACAAAATGAACAGCACCCACAAAAGGACTAA
TCCCC back to topCoding sequence (CDS) from alignment at chr5:1225401..1228455- >NO05G04710.3 ID=NO05G04710.3|Name=NO05G04710.3|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr5:1225401..1228455- (Nannochloropsis oceanica) ATGGAAGCGACCGAAATTCCTCTCACTAGGACGGCAGCCCGTGTCCTCTG CCCCCTCTGTGGTCTGTCCATGGAGAGCAATGCCGCCAACCGTTGTGGGA ACTGTGTCCGAAGCGAAATCAACCTTCAAGCAGATGTCGCGCCCGTGGGG CCTTTGATTCAGTGCAAAGGCTGTTTCAAATGGCGGACGAAGTCGAAACA TTGGGTGGCGGCTGACTTGGAGTCAAGAGAACTTTTGACACTTGTCCTCA AATTTTTGCCAGGACTGCAAAAGGGGGGAGGGACCGGGGGAGAAGCCGGG GGAGGGGCCGGGGGAGGAGGGATGGAAGTGGTGGAGGCGGGATGGATTTG GACGGAGCCGCATTCGAAGCGGCTGAGGGTGAAACTGACGGTGAGGAAGG AAGTGTTGAACGGGATCACTGTGCAACAGCGGGTGCAGGCGGAGTTTGTG GTGCGGACGATGCAGTGCGAAGCCTGCGCGCTAACCTTCACGGAACAAAC CTGGAAGGCTGTCTGCCAAGTGCGTCAACGCGTGGAGCACAAACGCACCT TTTTTTTCCTGGAGCAACTGCTGCTTGCTCGTCGCATGGAAAGCAAAGTC CTCGATATCGAGCTGGTCAAAGATGGCCTCGATCTATACTTCAGTGATAA GAATACCGCGGTGCAATTCTTGTCCTTCTTGCAGGCCGTCGTCCCGATGC GGACCAAAACGAGCCGGAAGCTTGTGTCGGAAGATAGGCAAAATAACGTG CACAGAAGTCAATGGTCCATGGCTGTGGAAATCGTGCCCTTGTGCAAGGA TGACTTGGTGTTGTTGTTGCGAGGGGGCGGAGGGAGGGAAGGAGGGACAG GCGGGGGGTTGCAGGGCTTCGTGCTGGTGTCGCGGGTGACGAGTGTGGTC CATTTGCTCGATGTCAGCACGTTGAAGAGGGCGGAGATGTCGGCAACAAG GTATTTCCAGCGGCCTCTGGAGTGTGTCATGACCAGTAAGGACCTCATTT CGTATGAGGTTCTGGATGTAGATCTGGTGGGCGGGAGAGAGGGAGGGAGG GGTGGAGGAGGAGAAGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA CGCAGCGGCGAAGTGGGGATTGGCAGAGGTGGAGGTTGTCAAGACGTCGG ACTTCGGAGTGCGTGATGTGAGCTATCGAGTCATGACGCACTTGGGCCAC GTGTTGCAGGTGGGCGACACGGTCCTCGGGTATGACCTCGTGAACGCCAC GGCCTTGGGCGGGAGGGAGGAAGAGTTGCAGGGGCTGCGGTACGATCCTC CAGATGTGGTACTAGTCAAGAAAGTGGACGTGGAGGGGAAGAGCGCAAAA AAAGAGAAGAAGAGATTGAAGCGCCTGCGGTCAAGAAGAGCGGCACGGGC CGCGGGGAAAGAGGAGGTGAGGAGGAAGGAGAGGGAAAGGGAGAAGAGGG AGGGAAGGAGGGAAGGAGGGGGGGAAGATGAGGGGGAGGAGGCAGAGTTT TTGGCGTTTGCGGCGGAATTGGAGGAAGACTTCGATATGCAGGCTCTGTT GTCGCAGCAGGAGAATGAGGCGAAGAGGTGGTTGGGGGAAAAGGAGGAGG GGGAAGATGACGTAGACAAGGGGGGGGGGAGGGATCACGAGGAGGATTTC GAGGAGGAAGGGTAG back to top
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