NO05G04410.1, NO05G04410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04410.1
Unique NameNO05G04410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr5:1142210..1144135 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1142210..1144135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04410.1 vs.
Match: XP_005854661.1 (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526]; EKU21695.1 dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.0 bits (1774), Expect = 1.600e-194
Identity = 333/353 (94.33%), Postives = 343/353 (97.17%), Query Frame = 0 
Query:    3 NGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSGALHEF 356
            NG AP   E +YTPKNIL+TGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH IKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFL+VEDVARAFEVILHRGVTGKIYNIGGT+EKANIEVAKDLIRLMG+ + EEKML FVEDRAFNDLRYTVNSEALKQLGW E+VSWEDGL+KTVEWYKQ+TGRYGNIDCALVAHPRSGA+HEF
Sbjct:    8 NGSAP---EAEYTPKNILVTGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIRLMGHGKEEEKMLQFVEDRAFNDLRYTVNSEALKQLGWREIVSWEDGLHKTVEWYKQHTGRYGNIDCALVAHPRSGAVHEF 357
The following BLAST results are available for this feature:
BLAST of NO05G04410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854661.11.600e-19494.33dTDP-glucose 4,6-dehydratase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04410NO05G04410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04410.1NO05G04410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04410.1.cds1NO05G04410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04410.1.cds2NO05G04410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04410.1.cds3NO05G04410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04410.1.cds4NO05G04410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04410.1.cds5NO05G04410.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04410.1.cds6NO05G04410.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04410.1 ID=NO05G04410.1|Name=NO05G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGTCTAACGGTTGCGCCCCCGTCACGGCTGAGACCGATTACACGCCCAA
AAACATCCTCATCACCGGCGGCGCAGGTTTCATCGCTTCTCACGTTGTCC
TTCTGCTGGTCAAGAAGTTCCCCAAGTATAAGATTGTGAATCTCGATCGA
CTGGATTACTGCTCTTGCCTCGAAAACCTCGATGAGATCAAGTACTACAA
AAACTACAAGTTCGTGAAAGGGAACATCTGCTCCTCTGACCTGGTCAACT
ATGTGCTGGAGGAGGAGGAGATAGACACCATCATGCACTTCGCCGCGCAG
ACCCACGTGGACAATAGCTTTGGGAACTCGTTCTCGTTCACGCAGAACAA
TATTCTGGGGACGCATGTGCTGTTGGAGAGTGCGAAAGTCCATGGCATTA
AACGATTCATTCACGTGTCCACGGATGAGGTGTACGGGGAGGGAGCGGCG
GACCAGGAGCCCATGTTTGAGGATCAAGTGCTCGAGCCCACCAACCCCTA
CGCGGCCACCAAGGCCGGCGCCGAGTTCATCGCCAAGTCCTACTCTCGTT
CTTTCAACCTGCCTCTTATCATCACCAGGGGAAACAACGTGTATGGGCCC
CATCAGTACCCCGAGAAGCTCATCCCCAAATTCGTTAATTTGCTCATGCG
CGACCGACCCGTCACGCTTCATGGCAATGGGCTCAACACCCGTAACTTCC
TCTTTGTGGAGGACGTGGCCCGCGCCTTCGAAGTCATTTTACACCGGGGC
GTGACGGGCAAGATCTACAATATTGGGGGGACGAACGAAAAGGCCAATAT
TGAGGTGGCTAAGGATCTAATCCGGCTCATGGGCTACGAGCAGGCGGAGG
AGAAAATGCTCAATTTTGTGGAGGATAGGGCTTTCAACGACTTGCGTTAC
ACGGTCAATAGCGAGGCCTTGAAGCAACTGGGGTGGGAGGAGCTGGTCTC
GTGGGAGGACGGGCTCAACAAGACCGTGGAGTGGTACAAGCAGTACACGG
GCAGGTACGGCAACATCGACTGTGCTTTGGTGGCGCACCCACGTTCCGGG
GCCTTGCACGAGTTCCCATAA
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protein sequence of NO05G04410.1

>NO05G04410.1-protein ID=NO05G04410.1-protein|Name=NO05G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSNGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDR
LDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQ
THVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAA
DQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGP
HQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRG
VTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRY
TVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSG
ALHEFP*
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mRNA from alignment at chr5:1142210..1144135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04410.1 ID=NO05G04410.1|Name=NO05G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at chr5:1142210..1144135+ (Nannochloropsis oceanica)
ATGTCTAACGGTTGCGCCCCCGTCACGGCTGAGACCGATTACACGCCCAA
AAACATCCTCATCACCGGCGGCGCAGGTTTCATGTAAGTTCCCCTTGAAA
CTGTGCTGTCCTTCTTTATCCTTCTCACACACACACTCGCATACGATCAC
CGCGGCACACACCACAGCGCTTCTCACGTTGTCCTTCTGCTGGTCAAGAA
GTTCCCCAAGTATAAGATTGTAAGTGCCTTTCCCCCTCTCGCCGCCTCCG
CCGTGCTCCCATTTTGAATGCATGTGGATTTCTATTCCATTCTTCTTTCC
TCTCTCATCTTTTGTCGCAAGGCTATGCCCCACCATCGACAGTGTGAAAC
CTCACGCCCCCATGTCGTGTATATTTATACATTCGCTTTGCCTTCACTGT
GGAAGTTGGTGGTTTGAGGACCAGTCTCTCCACTTCCCTTGTTCCTTTTT
TCACTTCTTACCACCCGCCTGACAACAGGTGAATCTCGATCGACTGGATT
ACTGCTCTTGCCTCGAAAACCTCGATGAGATCAAGTACTACAAAAACTAC
AAGTTCGTGAAAGGGAACATCTGCTCCTCTGACCTGGTCAACTATGTGCT
GGAGGAGGAGGAGATAGACACCATCATGCACTTCGCCGCGCAGACCCACG
TGGACAATAGCTTTGGGAACTCGTTCTCGTTCACGCAGAACAATATTCTG
GGGACGCATGTGCTGTTGGAGAGTGCGAAAGTCCATGGCATTAAACGATT
CATTCACGTGTCCACGGATGAGGTGTACGGGGAGGGAGCGGCGGACCAGG
AGCCCATGTTTGAGGATCAAGTGCTCGAGGTACGGACGGAGGGAGGGCGG
GCGGAAGGGACAGAAGGTTACATATTTATTTTTCTTCGTTATCTGGTAGA
CTGGATTCGGTGCTGTCTTGTCTGCTTTTGCGCAACGTGCGTGAGATGCT
CATGCTTTTGCTTCCTTTCGTTCTCTTCCTACCACCCGCTCCTCCTCCCC
CCCTCCTTCCAGCCCACCAACCCCTACGCGGCCACCAAGGCCGGCGCCGA
GTTCATCGCCAAGTCCTACTCTCGTTCTTTCAACCTGCCTCTTATCATCA
CCAGGGGAAACAACGTGTATGGGCCCCATCAGTACCCCGAGAAGCTCATC
CCCAAATTCGTTAATTTGCTCATGCGCGACCGACCCGTCACGCTTCATGG
CAATGGGCTCAACACCCGTAACTTCCTCTTTGTAAGTGTGCCTTTCTGTC
TGTTTACAACCCTCGGCATCTCTTTTTGGCTTCTACATCCCCCTTGCTTC
TAATTCTCCATGGTCACCCACCTTCCAATCCTACCTACCTCCCTCCCTCC
CTCCCTCCTTCCCTCCCTCCCTCCTTCCTCCCTCAGGTGGAGGACGTGGC
CCGCGCCTTCGAAGTCATTTTACACCGGGGCGTGACGGGCAAGATCTACA
ATATTGGGGGGACGAACGAAAAGGCCAATATTGAGGTGGCTAAGGATCTA
ATCCGGCTCATGGGCTACGAGCAGGCGGAGGAGAAAATGCTCAATTTTGT
GGAGGATAGGGCTTTCAACGGTACGTAAAGCGCTTTTCGGTATTCCTCCG
TTCCTTCCTCCCTCCCGATCTCTCTCTTTTTCTTTATTTTCCCGGGATGC
CATGGCTGGAGTTCAATATCCTGACTCGCAATAATTGCTTATCCACCGTA
CCCACCCCTCCCCACCTCCCTCCCTCCGTTGCCCCGCCCTTCAGACTTGC
GTTACACGGTCAATAGCGAGGCCTTGAAGCAACTGGGGTGGGAGGAGCTG
GTCTCGTGGGAGGACGGGCTCAACAAGACCGTGGAGTGGTACAAGCAGTA
CACGGGCAGGTACGGCAACATCGACTGTGCTTTGGTGGCGCACCCACGTT
CCGGGGCCTTGCACGAGTTCCCATAA
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Coding sequence (CDS) from alignment at chr5:1142210..1144135+

>NO05G04410.1 ID=NO05G04410.1|Name=NO05G04410.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr5:1142210..1144135+ (Nannochloropsis oceanica)
ATGTCTAACGGTTGCGCCCCCGTCACGGCTGAGACCGATTACACGCCCAA
AAACATCCTCATCACCGGCGGCGCAGGTTTCATCGCTTCTCACGTTGTCC
TTCTGCTGGTCAAGAAGTTCCCCAAGTATAAGATTGTGAATCTCGATCGA
CTGGATTACTGCTCTTGCCTCGAAAACCTCGATGAGATCAAGTACTACAA
AAACTACAAGTTCGTGAAAGGGAACATCTGCTCCTCTGACCTGGTCAACT
ATGTGCTGGAGGAGGAGGAGATAGACACCATCATGCACTTCGCCGCGCAG
ACCCACGTGGACAATAGCTTTGGGAACTCGTTCTCGTTCACGCAGAACAA
TATTCTGGGGACGCATGTGCTGTTGGAGAGTGCGAAAGTCCATGGCATTA
AACGATTCATTCACGTGTCCACGGATGAGGTGTACGGGGAGGGAGCGGCG
GACCAGGAGCCCATGTTTGAGGATCAAGTGCTCGAGCCCACCAACCCCTA
CGCGGCCACCAAGGCCGGCGCCGAGTTCATCGCCAAGTCCTACTCTCGTT
CTTTCAACCTGCCTCTTATCATCACCAGGGGAAACAACGTGTATGGGCCC
CATCAGTACCCCGAGAAGCTCATCCCCAAATTCGTTAATTTGCTCATGCG
CGACCGACCCGTCACGCTTCATGGCAATGGGCTCAACACCCGTAACTTCC
TCTTTGTGGAGGACGTGGCCCGCGCCTTCGAAGTCATTTTACACCGGGGC
GTGACGGGCAAGATCTACAATATTGGGGGGACGAACGAAAAGGCCAATAT
TGAGGTGGCTAAGGATCTAATCCGGCTCATGGGCTACGAGCAGGCGGAGG
AGAAAATGCTCAATTTTGTGGAGGATAGGGCTTTCAACGACTTGCGTTAC
ACGGTCAATAGCGAGGCCTTGAAGCAACTGGGGTGGGAGGAGCTGGTCTC
GTGGGAGGACGGGCTCAACAAGACCGTGGAGTGGTACAAGCAGTACACGG
GCAGGTACGGCAACATCGACTGTGCTTTGGTGGCGCACCCACGTTCCGGG
GCCTTGCACGAGTTCCCATAA
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Synonyms
Publications