NO05G04320.1, NO05G04320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04320.1
Unique NameNO05G04320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length678
Alignment locationchr5:1110313..1111610 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1110313..1111610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04320.1 vs.
Match: XP_005853916.1 (stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526]; EKU22443.1 stromal cell-derived factor 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.9 bits (860), Expect = 9.800e-89
Identity = 151/217 (69.59%), Postives = 183/217 (84.33%), Query Frame = 0 
Query:    9 AALLIVASLVAVVSAVEDDIMTFGSVVKFQHSSSKHFLHSHQINWGSGSGQQSVTAHRWEDEQGGMWVIKESNSGSFQEGGTPVACGAVVRLGHLQTARNLHSHFFSSPLSNQQEVSCFGEDGDGDTGDDWEVVCVSAGEKLWRRDHEIRLKHKDTGRFLQTEAKHRFSQKNCPNCPIIGQQEVFCHQTSGVETAWKATLGVFIHPKTDEEGDRDEL 226
            AA  ++ +LV  V ++EDDIMTFGSVVK QH  SK+FLHSHQI+WGSGSGQQSVTAH   D++GG+WV+ E ++  F+EGG+PVACG  +RLGH++T++NLHSHFFSSPLSNQQEVSCFG+ G GD+GD+WEVVC++ G K WRR  E+R KHKDTGRFLQTEAKHRF+QKNCPNCPI+GQQEVFCHQT G ET WKA  G+FIHP++DE+   DEL
Sbjct:   10 AAGWLLLTLVTPVLSLEDDIMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGRFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFIHPRSDEDSGHDEL 226
The following BLAST results are available for this feature:
BLAST of NO05G04320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853916.19.800e-8969.59stromal cell-derived factor 2 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04320NO05G04320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04320.1NO05G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04320.1.cds1NO05G04320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04320.1.cds2NO05G04320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04320.1 ID=NO05G04320.1|Name=NO05G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
ATGGTCTCTCACACCGCCGTCAATGCGGCCTTGCTGATTGTCGCCTCGCT
GGTTGCCGTCGTGTCTGCCGTCGAAGATGACATAATGACTTTCGGCAGCG
TGGTCAAGTTCCAACACAGCTCGAGCAAGCACTTTCTGCACAGCCACCAA
ATCAATTGGGGCTCCGGTAGCGGCCAACAATCTGTGACGGCCCATAGGTG
GGAAGACGAGCAAGGCGGGATGTGGGTGATCAAGGAAAGCAACTCGGGAA
GCTTCCAAGAAGGAGGCACCCCCGTGGCATGCGGAGCTGTGGTCCGCCTG
GGTCACTTACAGACGGCCCGAAACTTGCACTCGCATTTTTTCTCCTCCCC
GCTGAGCAATCAGCAGGAAGTGAGCTGTTTTGGAGAGGACGGGGATGGTG
ATACCGGGGATGACTGGGAGGTCGTATGTGTGTCGGCAGGAGAGAAGTTA
TGGAGGCGAGACCATGAGATTCGGTTGAAGCATAAGGATACTGGTAGGTT
CTTGCAGACGGAGGCGAAGCATCGTTTCTCACAGAAGAATTGTCCGAATT
GTCCGATTATTGGGCAGCAGGAGGTGTTTTGCCATCAGACGAGTGGGGTA
GAGACGGCTTGGAAGGCGACGCTGGGTGTGTTCATTCACCCGAAGACTGA
CGAAGAGGGGGATCGTGACGAGCTGTGA
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protein sequence of NO05G04320.1

>NO05G04320.1-protein ID=NO05G04320.1-protein|Name=NO05G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MVSHTAVNAALLIVASLVAVVSAVEDDIMTFGSVVKFQHSSSKHFLHSHQ
INWGSGSGQQSVTAHRWEDEQGGMWVIKESNSGSFQEGGTPVACGAVVRL
GHLQTARNLHSHFFSSPLSNQQEVSCFGEDGDGDTGDDWEVVCVSAGEKL
WRRDHEIRLKHKDTGRFLQTEAKHRFSQKNCPNCPIIGQQEVFCHQTSGV
ETAWKATLGVFIHPKTDEEGDRDEL*
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mRNA from alignment at chr5:1110313..1111610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04320.1 ID=NO05G04320.1|Name=NO05G04320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at chr5:1110313..1111610+ (Nannochloropsis oceanica)
ATGGTCTCTCACACCGCCGTCAATGCGGCCTTGCTGATTGTCGCCTCGCT
GGTTGCCGTCGTGTCTGCCGTCGAAGGTACGTTTGGTAGAGGTGAATGGC
ATGTATCGCTAGGAGAGCGGGTTGCGTTGATTGGATGTTGTTTGTGGGGT
GTGGCACGCACAGGTTTTTAAACGGGAGGAAAGACTAGGAGTGTTGATGA
ATTATGGGCTTCGAGTATACTTGATGTCGAGAGCTCTGTGCAGCAGTCCG
AGGCAAGAGTGATGGGATCATATGAATTGTCTGCAAAATCCTCTGCAGCG
TGTATCTCCAGATCTCTGCATCGCAAAGGTGTCTGGGGCCCGCTTCATGA
GCCTTCAGGTCCTTCTCCACCACCTTGGTACAGCGCTACTGTGCGACTGG
ACGTGCTCAAGCGTGCGAGACCCGCCTAGTTGTGATGGTCGATTTTTGGG
CAGCAATGAAAATCATGATGAGCACCTCATTTATTTGCGAAAGCTGTAAC
CGGTGGGATGTGTGTGCGGTTGAGCCATGCGGCATTCACAAGCACGTGAA
GTGGTCAGCCTACGTATCCGCGCTCCCCGCCTTCTCTTTTCAACCAGTAC
AGCAAATGAAAGCGTTTTTTTCTCGCGCTTTCTCGGCAATTATTTTATGC
GCAATTCTCATCTCTGCCCTCTCCCCTCCCATCCTCTCCAACATAGATGA
CATAATGACTTTCGGCAGCGTGGTCAAGTTCCAACACAGCTCGAGCAAGC
ACTTTCTGCACAGCCACCAAATCAATTGGGGCTCCGGTAGCGGCCAACAA
TCTGTGACGGCCCATAGGTGGGAAGACGAGCAAGGCGGGATGTGGGTGAT
CAAGGAAAGCAACTCGGGAAGCTTCCAAGAAGGAGGCACCCCCGTGGCAT
GCGGAGCTGTGGTCCGCCTGGGTCACTTACAGACGGCCCGAAACTTGCAC
TCGCATTTTTTCTCCTCCCCGCTGAGCAATCAGCAGGAAGTGAGCTGTTT
TGGAGAGGACGGGGATGGTGATACCGGGGATGACTGGGAGGTCGTATGTG
TGTCGGCAGGAGAGAAGTTATGGAGGCGAGACCATGAGATTCGGTTGAAG
CATAAGGATACTGGTAGGTTCTTGCAGACGGAGGCGAAGCATCGTTTCTC
ACAGAAGAATTGTCCGAATTGTCCGATTATTGGGCAGCAGGAGGTGTTTT
GCCATCAGACGAGTGGGGTAGAGACGGCTTGGAAGGCGACGCTGGGTGTG
TTCATTCACCCGAAGACTGACGAAGAGGGGGATCGTGACGAGCTGTGA
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Coding sequence (CDS) from alignment at chr5:1110313..1111610+

>NO05G04320.1 ID=NO05G04320.1|Name=NO05G04320.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr5:1110313..1111610+ (Nannochloropsis oceanica)
ATGGTCTCTCACACCGCCGTCAATGCGGCCTTGCTGATTGTCGCCTCGCT
GGTTGCCGTCGTGTCTGCCGTCGAAGATGACATAATGACTTTCGGCAGCG
TGGTCAAGTTCCAACACAGCTCGAGCAAGCACTTTCTGCACAGCCACCAA
ATCAATTGGGGCTCCGGTAGCGGCCAACAATCTGTGACGGCCCATAGGTG
GGAAGACGAGCAAGGCGGGATGTGGGTGATCAAGGAAAGCAACTCGGGAA
GCTTCCAAGAAGGAGGCACCCCCGTGGCATGCGGAGCTGTGGTCCGCCTG
GGTCACTTACAGACGGCCCGAAACTTGCACTCGCATTTTTTCTCCTCCCC
GCTGAGCAATCAGCAGGAAGTGAGCTGTTTTGGAGAGGACGGGGATGGTG
ATACCGGGGATGACTGGGAGGTCGTATGTGTGTCGGCAGGAGAGAAGTTA
TGGAGGCGAGACCATGAGATTCGGTTGAAGCATAAGGATACTGGTAGGTT
CTTGCAGACGGAGGCGAAGCATCGTTTCTCACAGAAGAATTGTCCGAATT
GTCCGATTATTGGGCAGCAGGAGGTGTTTTGCCATCAGACGAGTGGGGTA
GAGACGGCTTGGAAGGCGACGCTGGGTGTGTTCATTCACCCGAAGACTGA
CGAAGAGGGGGATCGTGACGAGCTGTGA
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Synonyms
Publications