NO05G03770.1, NO05G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03770.1
Unique NameNO05G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr5:986193..988073 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:986193..988073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03770.1 vs.
Match: EWM28025.1 (hypothetical protein Naga_100008g20 [Nannochloropsis gaditana])

HSP 1 Score: 615.1 bits (1585), Expect = 2.000e-172
Identity = 318/530 (60.00%), Postives = 386/530 (72.83%), Query Frame = 0 
Query:   25 RNMDALLGRLLTPLISKKRGQQARND---GQEYDDDDDDRSDEIYSAWFAGLLVLPVGVLYSVVLLFLGTYSHWFVACRRHIRRFTSHLLSWWQAFRVLAFSSNQD---GLELPPFLPRETSIGANSKAGLYWCGLGDVCERDDHVLSSSLFDSSKPTVIYVHGYQPRTIIRNFRESLNWNDNDDEYGLDMNAADHWLKAGWNVGVFYWASYADEDYVHDAEAKIWSNATRVGMRYRLLTQCGTRVKWRYVSSSVPCASEQLAAVLQRRFSPGTASYRLVGHSLGAQVVIHTATLLAQAKRKGLEKYGTAEEIKGSEID-GNSAQDNSMAVDFISSTSSSNPACSSSSSSPSPPT-----TLQASSMLPSRIALLDAFFTLEPKSYLGWRSLASVLKEEITALAQEEDVVFEQYQTSLLSFAASLHLKPLTAFFDVDPKHIPWWKLRARHVCAPYLYFHSMASQEVGRRVVKEVGGAWTDFWGEVLSQDVLEDEDSFRGMAKTPDAHLRLLIQACGSGGLWEHMYVHVTC 543
            +++D LL RLL P   +K  +  R D   G+E+  D    SDE+  +  A LL  P+G + S+ LL LGTY+H+  ACRR I  +   + + WQ+ R+  F         ++ P  +PR  S G NSK GLYWCGLGDVCERDD ++ +  FD  KP+V+YVHGYQPRTIIR FRESLNW DND+E+GLDMNAADHWLKAGWNVGVFYW+SYADEDY+HDAEAKIWSN T VGMRYR LT+CGTRVKWRYVSS VPC + QLA+VL++RF+  TA YRLVGHSLGAQVVIH ATLLA+AKR+        + I   ++      +     V  ++          +S +   P T     T +AS +LP+RIALLDAFFTLEPK Y+GWRSLASVLKEE+  L QEEDVVFEQY+TSLLSFAA+ HLKP TAFFD++PKHIPWWKLRARHVCAPYLYFHSMAS EVGRRV+K+VGGAWT FWG++  QD+LEDEDSFRG+A TPDAHLRLL+Q     G+WE ++ H++C
Sbjct:   15 QDVDVLLRRLLAP---EKEHESERMDCGYGREHIYD----SDELLLSNVASLLAFPLGGICSIFLLLLGTYTHFCTACRRFIVAWADQIEATWQSLRLSRFHLQDHRNINIKRPKLMPRMISHGTNSKTGLYWCGLGDVCERDD-LIFTPYFDPKKPSVVYVHGYQPRTIIRCFRESLNWGDNDNEFGLDMNAADHWLKAGWNVGVFYWSSYADEDYIHDAEAKIWSNQTSVGMRYRSLTKCGTRVKWRYVSSDVPCVAHQLASVLRQRFTSDTAGYRLVGHSLGAQVVIHAATLLARAKRRQANAVCLQDGIVNCDVTLDEKTRGKVQGVPNVAPGMEYLGPGGTSDADYIPYTVGSSRTREASFLLPTRIALLDAFFTLEPKRYVGWRSLASVLKEELANLVQEEDVVFEQYRTSLLSFAANFHLKPFTAFFDLNPKHIPWWKLRARHVCAPYLYFHSMASLEVGRRVMKDVGGAWTAFWGQIYHQDMLEDEDSFRGIATTPDAHLRLLMQRYAMEGIWE-LFTHISC 535
The following BLAST results are available for this feature:
BLAST of NO05G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28025.12.000e-17260.00hypothetical protein Naga_100008g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03770NO05G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03770.1NO05G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03770.1.cds1NO05G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03770.1 ID=NO05G03770.1|Name=NO05G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
TAGCCATGGTATCAGGCTTCCTCTCCCAGACGCCCACCGGGTCCACCGTC
GCCTACGCTGCCGCTGCCGCCGAGGACAGAAACATGGACGCGTTGCTCGG
CCGCCTCCTGACGCCGCTCATTTCGAAAAAACGAGGTCAGCAGGCAAGAA
ATGATGGGCAGGAGTATGATGATGACGACGACGACCGTTCGGACGAGATT
TATTCGGCATGGTTTGCAGGGCTGTTGGTTTTACCCGTCGGCGTCCTCTA
CTCGGTCGTGCTCCTATTTCTCGGCACGTACAGCCACTGGTTTGTCGCCT
GTCGGCGGCATATCAGACGTTTTACAAGCCATCTTCTTTCCTGGTGGCAG
GCCTTTCGTGTCTTGGCTTTTTCTAGCAACCAGGATGGTCTGGAGCTCCC
GCCATTTCTGCCGCGTGAGACCTCTATCGGCGCAAACAGCAAGGCCGGCC
TGTATTGGTGCGGGTTGGGGGATGTGTGCGAACGCGACGACCACGTGTTA
TCTTCATCACTCTTTGACTCCAGCAAGCCGACCGTAATTTATGTGCATGG
ATATCAACCAAGGACGATAATAAGAAACTTTCGTGAGTCACTCAATTGGA
ACGACAATGATGACGAGTACGGCTTGGACATGAACGCTGCAGATCACTGG
CTGAAGGCTGGTTGGAACGTAGGCGTATTTTATTGGGCAAGTTATGCAGA
TGAGGACTATGTGCATGATGCAGAAGCAAAGATTTGGTCGAATGCCACCC
GAGTTGGAATGCGCTATCGTCTGTTGACTCAATGTGGCACGAGGGTTAAG
TGGCGTTACGTCTCTTCATCAGTTCCCTGCGCGTCTGAACAGCTGGCAGC
AGTGTTACAGCGGAGATTTTCGCCAGGTACAGCGAGTTACCGGTTGGTTG
GGCATAGTTTAGGGGCGCAAGTGGTAATTCACACGGCAACGTTGTTGGCG
CAGGCAAAGCGGAAGGGACTGGAGAAATACGGAACGGCTGAAGAGATAAA
AGGGAGTGAGATTGATGGCAATTCTGCGCAAGACAATTCCATGGCGGTTG
ACTTTATCTCTAGCACCAGCAGCAGTAATCCTGCCTGCTCCTCGTCGTCG
TCGTCCCCCTCCCCTCCCACCACACTCCAAGCCTCCTCCATGCTCCCCTC
TCGCATTGCCCTCCTCGATGCCTTCTTCACTTTGGAACCCAAAAGCTATC
TTGGCTGGCGTTCCCTCGCCAGTGTTCTGAAGGAAGAAATCACAGCTTTG
GCTCAGGAGGAGGACGTGGTGTTTGAACAGTACCAGACGTCTCTCCTCTC
ATTTGCAGCAAGCTTGCACCTGAAGCCTCTGACGGCATTTTTCGATGTAG
ATCCCAAGCATATCCCGTGGTGGAAGCTGCGGGCTCGGCATGTGTGTGCG
CCATATCTGTATTTTCATTCGATGGCCTCGCAGGAGGTGGGAAGAAGGGT
GGTGAAAGAGGTGGGGGGTGCGTGGACGGATTTCTGGGGGGAGGTCCTTA
GCCAGGATGTGTTGGAGGACGAGGATTCGTTTCGTGGAATGGCGAAGACC
CCGGACGCGCACTTGCGTCTGTTGATACAGGCGTGTGGAAGTGGGGGGTT
GTGGGAGCATATGTATGTGCATGTAACTTGCCGGTTGTTGATGTGGCGGT
GACATCGTGTGAATGAAGATCGGCGGGGTTGGCTTTTAAGGGCTTTTTAG
GGTTGACTTTGTTGGATAACTATTGAAAGATTGTCTTCGGAGATTCCTCT
GATAGTAAATTTCGTGTGTACATAAATATGAATAAGAAGATATACAATAT
TTTGGAGATGAATTATTGGTAGAAAATCGAAGAGATAATACAATATGGAC
GACAAATAAAAACAGTGACGCTGACTGACGA
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protein sequence of NO05G03770.1

>NO05G03770.1-protein ID=NO05G03770.1-protein|Name=NO05G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MVSGFLSQTPTGSTVAYAAAAAEDRNMDALLGRLLTPLISKKRGQQARND
GQEYDDDDDDRSDEIYSAWFAGLLVLPVGVLYSVVLLFLGTYSHWFVACR
RHIRRFTSHLLSWWQAFRVLAFSSNQDGLELPPFLPRETSIGANSKAGLY
WCGLGDVCERDDHVLSSSLFDSSKPTVIYVHGYQPRTIIRNFRESLNWND
NDDEYGLDMNAADHWLKAGWNVGVFYWASYADEDYVHDAEAKIWSNATRV
GMRYRLLTQCGTRVKWRYVSSSVPCASEQLAAVLQRRFSPGTASYRLVGH
SLGAQVVIHTATLLAQAKRKGLEKYGTAEEIKGSEIDGNSAQDNSMAVDF
ISSTSSSNPACSSSSSSPSPPTTLQASSMLPSRIALLDAFFTLEPKSYLG
WRSLASVLKEEITALAQEEDVVFEQYQTSLLSFAASLHLKPLTAFFDVDP
KHIPWWKLRARHVCAPYLYFHSMASQEVGRRVVKEVGGAWTDFWGEVLSQ
DVLEDEDSFRGMAKTPDAHLRLLIQACGSGGLWEHMYVHVTCRLLMWR*
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mRNA from alignment at chr5:986193..988073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03770.1 ID=NO05G03770.1|Name=NO05G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr5:986193..988073- (Nannochloropsis oceanica)
TAGCCATGGTATCAGGCTTCCTCTCCCAGACGCCCACCGGGTCCACCGTC
GCCTACGCTGCCGCTGCCGCCGAGGACAGAAACATGGACGCGTTGCTCGG
CCGCCTCCTGACGCCGCTCATTTCGAAAAAACGAGGTCAGCAGGCAAGAA
ATGATGGGCAGGAGTATGATGATGACGACGACGACCGTTCGGACGAGATT
TATTCGGCATGGTTTGCAGGGCTGTTGGTTTTACCCGTCGGCGTCCTCTA
CTCGGTCGTGCTCCTATTTCTCGGCACGTACAGCCACTGGTTTGTCGCCT
GTCGGCGGCATATCAGACGTTTTACAAGCCATCTTCTTTCCTGGTGGCAG
GCCTTTCGTGTCTTGGCTTTTTCTAGCAACCAGGATGGTCTGGAGCTCCC
GCCATTTCTGCCGCGTGAGACCTCTATCGGCGCAAACAGCAAGGCCGGCC
TGTATTGGTGCGGGTTGGGGGATGTGTGCGAACGCGACGACCACGTGTTA
TCTTCATCACTCTTTGACTCCAGCAAGCCGACCGTAATTTATGTGCATGG
ATATCAACCAAGGACGATAATAAGAAACTTTCGTGAGTCACTCAATTGGA
ACGACAATGATGACGAGTACGGCTTGGACATGAACGCTGCAGATCACTGG
CTGAAGGCTGGTTGGAACGTAGGCGTATTTTATTGGGCAAGTTATGCAGA
TGAGGACTATGTGCATGATGCAGAAGCAAAGATTTGGTCGAATGCCACCC
GAGTTGGAATGCGCTATCGTCTGTTGACTCAATGTGGCACGAGGGTTAAG
TGGCGTTACGTCTCTTCATCAGTTCCCTGCGCGTCTGAACAGCTGGCAGC
AGTGTTACAGCGGAGATTTTCGCCAGGTACAGCGAGTTACCGGTTGGTTG
GGCATAGTTTAGGGGCGCAAGTGGTAATTCACACGGCAACGTTGTTGGCG
CAGGCAAAGCGGAAGGGACTGGAGAAATACGGAACGGCTGAAGAGATAAA
AGGGAGTGAGATTGATGGCAATTCTGCGCAAGACAATTCCATGGCGGTTG
ACTTTATCTCTAGCACCAGCAGCAGTAATCCTGCCTGCTCCTCGTCGTCG
TCGTCCCCCTCCCCTCCCACCACACTCCAAGCCTCCTCCATGCTCCCCTC
TCGCATTGCCCTCCTCGATGCCTTCTTCACTTTGGAACCCAAAAGCTATC
TTGGCTGGCGTTCCCTCGCCAGTGTTCTGAAGGAAGAAATCACAGCTTTG
GCTCAGGAGGAGGACGTGGTGTTTGAACAGTACCAGACGTCTCTCCTCTC
ATTTGCAGCAAGCTTGCACCTGAAGCCTCTGACGGCATTTTTCGATGTAG
ATCCCAAGCATATCCCGTGGTGGAAGCTGCGGGCTCGGCATGTGTGTGCG
CCATATCTGTATTTTCATTCGATGGCCTCGCAGGAGGTGGGAAGAAGGGT
GGTGAAAGAGGTGGGGGGTGCGTGGACGGATTTCTGGGGGGAGGTCCTTA
GCCAGGATGTGTTGGAGGACGAGGATTCGTTTCGTGGAATGGCGAAGACC
CCGGACGCGCACTTGCGTCTGTTGATACAGGCGTGTGGAAGTGGGGGGTT
GTGGGAGCATATGTATGTGCATGTAACTTGCCGGTTGTTGATGTGGCGGT
GACATCGTGTGAATGAAGATCGGCGGGGTTGGCTTTTAAGGGCTTTTTAG
GGTTGACTTTGTTGGATAACTATTGAAAGATTGTCTTCGGAGATTCCTCT
GATAGTAAATTTCGTGTGTACATAAATATGAATAAGAAGATATACAATAT
TTTGGAGATGAATTATTGGTAGAAAATCGAAGAGATAATACAATATGGAC
GACAAATAAAAACAGTGACGCTGACTGACGA
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Coding sequence (CDS) from alignment at chr5:986193..988073-

>NO05G03770.1 ID=NO05G03770.1|Name=NO05G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr5:986193..988073- (Nannochloropsis oceanica)
ATGGTATCAGGCTTCCTCTCCCAGACGCCCACCGGGTCCACCGTCGCCTA
CGCTGCCGCTGCCGCCGAGGACAGAAACATGGACGCGTTGCTCGGCCGCC
TCCTGACGCCGCTCATTTCGAAAAAACGAGGTCAGCAGGCAAGAAATGAT
GGGCAGGAGTATGATGATGACGACGACGACCGTTCGGACGAGATTTATTC
GGCATGGTTTGCAGGGCTGTTGGTTTTACCCGTCGGCGTCCTCTACTCGG
TCGTGCTCCTATTTCTCGGCACGTACAGCCACTGGTTTGTCGCCTGTCGG
CGGCATATCAGACGTTTTACAAGCCATCTTCTTTCCTGGTGGCAGGCCTT
TCGTGTCTTGGCTTTTTCTAGCAACCAGGATGGTCTGGAGCTCCCGCCAT
TTCTGCCGCGTGAGACCTCTATCGGCGCAAACAGCAAGGCCGGCCTGTAT
TGGTGCGGGTTGGGGGATGTGTGCGAACGCGACGACCACGTGTTATCTTC
ATCACTCTTTGACTCCAGCAAGCCGACCGTAATTTATGTGCATGGATATC
AACCAAGGACGATAATAAGAAACTTTCGTGAGTCACTCAATTGGAACGAC
AATGATGACGAGTACGGCTTGGACATGAACGCTGCAGATCACTGGCTGAA
GGCTGGTTGGAACGTAGGCGTATTTTATTGGGCAAGTTATGCAGATGAGG
ACTATGTGCATGATGCAGAAGCAAAGATTTGGTCGAATGCCACCCGAGTT
GGAATGCGCTATCGTCTGTTGACTCAATGTGGCACGAGGGTTAAGTGGCG
TTACGTCTCTTCATCAGTTCCCTGCGCGTCTGAACAGCTGGCAGCAGTGT
TACAGCGGAGATTTTCGCCAGGTACAGCGAGTTACCGGTTGGTTGGGCAT
AGTTTAGGGGCGCAAGTGGTAATTCACACGGCAACGTTGTTGGCGCAGGC
AAAGCGGAAGGGACTGGAGAAATACGGAACGGCTGAAGAGATAAAAGGGA
GTGAGATTGATGGCAATTCTGCGCAAGACAATTCCATGGCGGTTGACTTT
ATCTCTAGCACCAGCAGCAGTAATCCTGCCTGCTCCTCGTCGTCGTCGTC
CCCCTCCCCTCCCACCACACTCCAAGCCTCCTCCATGCTCCCCTCTCGCA
TTGCCCTCCTCGATGCCTTCTTCACTTTGGAACCCAAAAGCTATCTTGGC
TGGCGTTCCCTCGCCAGTGTTCTGAAGGAAGAAATCACAGCTTTGGCTCA
GGAGGAGGACGTGGTGTTTGAACAGTACCAGACGTCTCTCCTCTCATTTG
CAGCAAGCTTGCACCTGAAGCCTCTGACGGCATTTTTCGATGTAGATCCC
AAGCATATCCCGTGGTGGAAGCTGCGGGCTCGGCATGTGTGTGCGCCATA
TCTGTATTTTCATTCGATGGCCTCGCAGGAGGTGGGAAGAAGGGTGGTGA
AAGAGGTGGGGGGTGCGTGGACGGATTTCTGGGGGGAGGTCCTTAGCCAG
GATGTGTTGGAGGACGAGGATTCGTTTCGTGGAATGGCGAAGACCCCGGA
CGCGCACTTGCGTCTGTTGATACAGGCGTGTGGAAGTGGGGGGTTGTGGG
AGCATATGTATGTGCATGTAACTTGCCGGTTGTTGATGTGGCGGTGA
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Synonyms
Publications