NO05G03540.1, NO05G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03540.1
Unique NameNO05G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length895
Alignment locationchr5:927319..928368 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:927319..928368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03540.1 vs.
Match: EWM28053.1 (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 2.300e-49
Identity = 100/118 (84.75%), Postives = 106/118 (89.83%), Query Frame = 0 
Query:   36 RSFAAAAAGGSDKVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIEDLESRP 154
            R+FAAAAA   DKV L +DFKAFSD TT NER VAYFTASWCPPCRTISPVF+TLS K+ DVKFLK+DVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGAD+KKL EGIEDLE RP
Sbjct:   41 RTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158
The following BLAST results are available for this feature:
BLAST of NO05G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28053.12.300e-4984.75thioredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03540NO05G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03540.1NO05G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03540.1.cds1NO05G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03540.1.cds2NO05G03540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03540.1 ID=NO05G03540.1|Name=NO05G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
CTACAGGTGCACAACCTCTCCACAACCATCCCAATCAGCATGTTGCTGAG
GCATCTTACACGTTTCTCGACCCGTGTGGCCACCACGACGTCCACCATTC
TTCCTTCCGGCTGCAGCGTCATCGGCGGCAGCAGCAGCGGCAGACGGTCC
TTCGCCGCGGCAGCGGCAGGAGGGAGCGACAAGGTGCAGCTGGTCGAGGA
CTTCAAGGCTTTTTCCGACGCGACCACGACGAATGAGCGTTCAGTGGCCT
ACTTTACAGCCTCCTGGTGCCCCCCATGCCGGACCATCTCCCCCGTGTTT
GCCACGTTGAGCGGAAAGCATGTGGACGTGAAGTTCTTAAAAGTAGATGT
TGACGCCAACGAAGAAGCGGCAAGCAAGAGCAATATTCGGACCATTCCCG
CTTTTCACTTTTATAGGAAGGGCAAGCTTGTTGGCACCTTTGCTGGGGCC
GATCAGAAAAAACTCGCAGAGGGAATTGAGGACTTGGAATCTCGCCCTTG
AGGTGGAAGGGACGGAGGGACGAAAGGGGAGAGATTGGGAATATTAGTCA
AAAATAAATGAAGCATAAGGCGTGTAGCGTGTACGTAGGACGAAAAAGTA
GAAAATACATGAGCAGCGGCCTTTATGGCGCATTTTCAGGTTTAATGTGA
CTAAATCGAAAGAACCTTGCGAGAGGGGGTTATGTCCGCAATAGCCAGGT
GAAAGATGAAGCAAGAAACAAAGCGGCATCTTTCTTTCCGATTGTGCGTG
AGAACGGCAGCGAAGCCTATTTTTGACACGACGACGGTGATGGCGGGACG
AGAGAGAATGAAAATAATGTATACGACGGCAAAACACTGAATTCTGCGCG
TTCAGATTCCACCCTAGTCCTGTGTACATTCTAAGGCAGGAGGTT
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protein sequence of NO05G03540.1

>NO05G03540.1-protein ID=NO05G03540.1-protein|Name=NO05G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MLLRHLTRFSTRVATTTSTILPSGCSVIGGSSSGRRSFAAAAAGGSDKVQ
LVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFL
KVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIEDLE
SRP*
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mRNA from alignment at chr5:927319..928368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03540.1 ID=NO05G03540.1|Name=NO05G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at chr5:927319..928368+ (Nannochloropsis oceanica)
CTACAGGTGCACAACCTCTCCACAACCATCCCAATCAGCATGTTGCTGAG
GCATCTTACACGTTTCTCGACCCGTGTGGCCACCACGACGTCCACCATTC
TTCCTTCCGGCTGCAGCGTCATCGGCGGCAGCAGCAGCGGCAGACGGTCC
TTCGCCGCGGCAGCGGCAGGAGGGAGCGACAAGGTGCAGCTGGTCGAGGA
CTTCAAGGCTTTTTCCGACGCGACCACGACGAATGAGCGTTCAGTGGCCT
ACTTTACAGCCTCCTGGTGCCCCCCATGCCGGACCATCTCCCCCGTGTTT
GCCACGTTGAGCGGAAAGCATGTGGACGTGAAGTTCTTAAAAGTAGATGT
GAGTAGGGGAAATGGGAAAGGGCGCGGATAGAAAAGGGGTTGATGGAGTA
TTGACCTAAGCGGTGCCTGAGGAACGGATCAAGACTCTGAAAATCTGCAT
TCCTTGACACATTCCTCTGTCGTCCCCTCCTCCTTCTTTTCCCTCCCCCT
CAGGTTGACGCCAACGAAGAAGCGGCAAGCAAGAGCAATATTCGGACCAT
TCCCGCTTTTCACTTTTATAGGAAGGGCAAGCTTGTTGGCACCTTTGCTG
GGGCCGATCAGAAAAAACTCGCAGAGGGAATTGAGGACTTGGAATCTCGC
CCTTGAGGTGGAAGGGACGGAGGGACGAAAGGGGAGAGATTGGGAATATT
AGTCAAAAATAAATGAAGCATAAGGCGTGTAGCGTGTACGTAGGACGAAA
AAGTAGAAAATACATGAGCAGCGGCCTTTATGGCGCATTTTCAGGTTTAA
TGTGACTAAATCGAAAGAACCTTGCGAGAGGGGGTTATGTCCGCAATAGC
CAGGTGAAAGATGAAGCAAGAAACAAAGCGGCATCTTTCTTTCCGATTGT
GCGTGAGAACGGCAGCGAAGCCTATTTTTGACACGACGACGGTGATGGCG
GGACGAGAGAGAATGAAAATAATGTATACGACGGCAAAACACTGAATTCT
GCGCGTTCAGATTCCACCCTAGTCCTGTGTACATTCTAAGGCAGGAGGTT
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Coding sequence (CDS) from alignment at chr5:927319..928368+

>NO05G03540.1 ID=NO05G03540.1|Name=NO05G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr5:927319..928368+ (Nannochloropsis oceanica)
ATGTTGCTGAGGCATCTTACACGTTTCTCGACCCGTGTGGCCACCACGAC
GTCCACCATTCTTCCTTCCGGCTGCAGCGTCATCGGCGGCAGCAGCAGCG
GCAGACGGTCCTTCGCCGCGGCAGCGGCAGGAGGGAGCGACAAGGTGCAG
CTGGTCGAGGACTTCAAGGCTTTTTCCGACGCGACCACGACGAATGAGCG
TTCAGTGGCCTACTTTACAGCCTCCTGGTGCCCCCCATGCCGGACCATCT
CCCCCGTGTTTGCCACGTTGAGCGGAAAGCATGTGGACGTGAAGTTCTTA
AAAGTAGATGTTGACGCCAACGAAGAAGCGGCAAGCAAGAGCAATATTCG
GACCATTCCCGCTTTTCACTTTTATAGGAAGGGCAAGCTTGTTGGCACCT
TTGCTGGGGCCGATCAGAAAAAACTCGCAGAGGGAATTGAGGACTTGGAA
TCTCGCCCTTGA
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Synonyms
Publications