NO05G03150.1, NO05G03150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03150.1
Unique NameNO05G03150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1974
Alignment locationchr5:816824..818797 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:816824..818797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G03150.1 vs.
Match: EWM28090.1 (protein-er retention protein [Nannochloropsis gaditana])

HSP 1 Score: 631.3 bits (1627), Expect = 2.500e-177
Identity = 352/511 (68.88%), Postives = 397/511 (77.69%), Query Frame = 0 
Query:    1 MEVGGGETVESVLKRLEQKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLVPNATGINSNGSGGASGGPSSSNSSGCTNSSGSNISNTTSSSSRISHSALQQPHQPVCHPRKVVGLVTSLIMGMVVCTLLMSELLGQPYQHAPFVFYFLLLAALLYPFDTTRVFREFAVLFGRVLWLVFFPGSEVHFLEVLVGDILTSMSKVFFEIGLACVATLLALSPTFFRVLSPDILPTLMASTPFILRIRQCLVQHRGATSEKSRFLISLNILKYCSSIPGLWLPLLLAPHYATRQIERVLLWVLLVNSLYSFLWDVIMDWGLGHINLSGHGSSSSSTSGGGRKGGGGERSPSSRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVEFDHRLSYDKFMLLIEGLEVLRRGVWSIYRIEWECLNLTGGRRVEGGGGISMVDVGKGG----LAGGGGFVGKKGVG---GHDSDESVDLERSFGMDEDD---IGMEVTSKLLSR 502
            MEVGGGETVESVLKRL+QKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLV       S G  G SG     + SG ++      + +  S S +     QQ  QPVCHPRKV+ LVT L++ MV C L+MSELLGQPYQHAPF+FYFLLLAA++YP DTT +FRE A+LFGRVLWLV  PG+E+HFLEVLVGDILTS+SKVFFE+GL CVATLL+LSP  FR++SPDI PTL+ASTPFILRIRQC+VQ RG  S K+RFL+SLNILKYCSSIPGLWLPLLLAPHY+T QIERVLL VLLVNSLYSFLWDVIMDWGLGH+ L+G            +KGGGG    + RLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYV FDHRLSYDKFMLLIE LEVLRRG+WSIYRIEWECL++ GGR+  GGG +  V+   GG    +A G    G  G G     D +  VDLERS G++ +     G +VT+ LLSR
Sbjct:    1 MEVGGGETVESVLKRLDQKSEYAVVRGTCVGILFISLWALNLHVFKVAHIDISCIYPAKLV-------SAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQKQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFYFLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILTSLSKVFFEVGLTCVATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCVVQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQIERVLLVVLLVNSLYSFLWDVIMDWGLGHVKLTG----------APKKGGGG----AVRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGIWSIYRIEWECLSINGGRK--GGGLLGRVETPMGGGIGMVAIGSKRAGGNGAGNTLARDMEGEVDLERSVGIETESGGGEGTDVTTVLLSR 488
The following BLAST results are available for this feature:
BLAST of NO05G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28090.12.500e-17768.88protein-er retention protein [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03150NO05G03150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03150.1NO05G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03150.1.cds1NO05G03150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03150.1 ID=NO05G03150.1|Name=NO05G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp
ACAGCCGAAGCTAACAAGGCACACCATCATCGAGGCCCCCTCATTTTACG
CGCCCGTTATTCTAACTGCCTTTGCACCCTCCCGAATCGCTGTCACGCAA
CACTTGACTAGCCAGCGCCATGGAAGTCGGTGGGGGCGAGACGGTGGAGA
GTGTGCTGAAGCGGCTTGAACAGAAGAGCGAATACGCCGTGGTACGAGGA
ACATGCGTAGGCATTCTCTTCATTTCCCTGTGGGCTCTCAACCTGCACGT
CTTTAAGGTTGCACACATCGACATCTCCTGCATATACCCGGCGAAGCTCG
TGCCAAACGCGACAGGGATCAACAGTAATGGTAGCGGAGGAGCGAGTGGC
GGGCCAAGTTCCAGCAACAGCAGCGGCTGTACCAACAGCAGCGGCAGCAA
CATCAGCAACACCACCTCGAGCAGCAGCAGAATATCCCATTCCGCCCTTC
AACAACCCCACCAGCCCGTGTGCCACCCGCGCAAGGTCGTTGGTCTTGTT
ACGTCATTAATCATGGGCATGGTGGTATGCACCCTCCTTATGTCGGAGCT
TCTGGGTCAACCCTACCAACACGCCCCCTTTGTCTTCTACTTTCTTCTCC
TCGCCGCCCTCCTCTATCCCTTTGACACAACCCGGGTCTTCCGCGAGTTC
GCTGTCCTCTTCGGGCGGGTACTCTGGCTCGTCTTCTTCCCTGGAAGCGA
AGTGCATTTCCTAGAAGTCCTAGTGGGTGATATATTGACCAGCATGTCCA
AAGTCTTTTTCGAAATCGGTCTCGCTTGTGTTGCGACTCTCCTCGCCCTC
TCCCCCACTTTCTTCCGCGTCCTTTCTCCAGATATCCTACCTACGCTCAT
GGCAAGTACACCCTTCATCCTGCGAATCCGCCAATGCCTGGTGCAACACC
GAGGGGCGACGTCAGAAAAAAGTCGATTTCTCATTTCGCTCAATATCTTA
AAGTACTGCTCCTCGATTCCTGGCCTATGGCTGCCCCTCCTCCTTGCCCC
CCATTACGCAACCCGACAAATTGAACGTGTATTGCTGTGGGTACTGTTAG
TTAATTCTTTGTATTCTTTTCTATGGGATGTCATCATGGATTGGGGTCTA
GGACACATCAACCTGAGCGGCCACGGTAGCAGCAGCAGCAGCACCAGTGG
CGGCGGTAGGAAAGGCGGGGGAGGGGAAAGAAGTCCGTCATCGAGATTAA
GGCATTGGGGCCTGAGGCCGACATTGTTATTTGGGTCGGCGGGGTCTTAT
TATGCGGCCATTGGGTTGGATTTGGTGCTTCGGTTGGTGTGGGTGTTGAA
GTACGTGGAGTTTGACCACCGGCTTTCATATGATAAATTCATGTTGTTGA
TTGAGGGGTTGGAGGTGCTCAGGAGAGGGGTATGGTCGATATATAGGATT
GAGTGGGAGTGTTTGAATTTGACGGGGGGTAGGAGGGTGGAGGGTGGGGG
AGGGATAAGTATGGTGGATGTTGGAAAGGGGGGACTGGCAGGAGGAGGAG
GGTTTGTGGGAAAGAAGGGAGTGGGAGGTCATGATAGTGATGAAAGTGTT
GACTTGGAGAGGTCGTTTGGGATGGATGAGGATGACATTGGAATGGAGGT
GACGAGTAAATTGTTGTCGCGTTGATATGGTTGATTTCATGAATTTTGGA
GTAATGGGGAGGAGGATTGAAAGGGAAGAGCGCTCTCAGGATGGAGGGGA
GGAAAAAGAGTTGAGATGTGTGAGTGCGACTGTCCCATGTCTTAGTGTAG
TCCCAGAAGTAGTGTCTGTTTTATAACGGAAAAATGGTTTTTAAATGTAT
GTATATAATAAGTCAGAGGGGGCAAGGACGGCAACCGACCTTTCCTCCTC
GCTAACATAGTACTCTCACGTGAACGAAACGATAAAAAGTATTTTGGCCT
CCCTTCTTTCTCCTCGGTGATTGAGGACAGAAGAAGGAAAATATAGTGAA
ATTAACTCAAGAATAATGCGGAAC
back to top

protein sequence of NO05G03150.1

>NO05G03150.1-protein ID=NO05G03150.1-protein|Name=NO05G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MEVGGGETVESVLKRLEQKSEYAVVRGTCVGILFISLWALNLHVFKVAHI
DISCIYPAKLVPNATGINSNGSGGASGGPSSSNSSGCTNSSGSNISNTTS
SSSRISHSALQQPHQPVCHPRKVVGLVTSLIMGMVVCTLLMSELLGQPYQ
HAPFVFYFLLLAALLYPFDTTRVFREFAVLFGRVLWLVFFPGSEVHFLEV
LVGDILTSMSKVFFEIGLACVATLLALSPTFFRVLSPDILPTLMASTPFI
LRIRQCLVQHRGATSEKSRFLISLNILKYCSSIPGLWLPLLLAPHYATRQ
IERVLLWVLLVNSLYSFLWDVIMDWGLGHINLSGHGSSSSSTSGGGRKGG
GGERSPSSRLRHWGLRPTLLFGSAGSYYAAIGLDLVLRLVWVLKYVEFDH
RLSYDKFMLLIEGLEVLRRGVWSIYRIEWECLNLTGGRRVEGGGGISMVD
VGKGGLAGGGGFVGKKGVGGHDSDESVDLERSFGMDEDDIGMEVTSKLLS
R*
back to top

mRNA from alignment at chr5:816824..818797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03150.1 ID=NO05G03150.1|Name=NO05G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1974bp|location=Sequence derived from alignment at chr5:816824..818797+ (Nannochloropsis oceanica)
ACAGCCGAAGCTAACAAGGCACACCATCATCGAGGCCCCCTCATTTTACG
CGCCCGTTATTCTAACTGCCTTTGCACCCTCCCGAATCGCTGTCACGCAA
CACTTGACTAGCCAGCGCCATGGAAGTCGGTGGGGGCGAGACGGTGGAGA
GTGTGCTGAAGCGGCTTGAACAGAAGAGCGAATACGCCGTGGTACGAGGA
ACATGCGTAGGCATTCTCTTCATTTCCCTGTGGGCTCTCAACCTGCACGT
CTTTAAGGTTGCACACATCGACATCTCCTGCATATACCCGGCGAAGCTCG
TGCCAAACGCGACAGGGATCAACAGTAATGGTAGCGGAGGAGCGAGTGGC
GGGCCAAGTTCCAGCAACAGCAGCGGCTGTACCAACAGCAGCGGCAGCAA
CATCAGCAACACCACCTCGAGCAGCAGCAGAATATCCCATTCCGCCCTTC
AACAACCCCACCAGCCCGTGTGCCACCCGCGCAAGGTCGTTGGTCTTGTT
ACGTCATTAATCATGGGCATGGTGGTATGCACCCTCCTTATGTCGGAGCT
TCTGGGTCAACCCTACCAACACGCCCCCTTTGTCTTCTACTTTCTTCTCC
TCGCCGCCCTCCTCTATCCCTTTGACACAACCCGGGTCTTCCGCGAGTTC
GCTGTCCTCTTCGGGCGGGTACTCTGGCTCGTCTTCTTCCCTGGAAGCGA
AGTGCATTTCCTAGAAGTCCTAGTGGGTGATATATTGACCAGCATGTCCA
AAGTCTTTTTCGAAATCGGTCTCGCTTGTGTTGCGACTCTCCTCGCCCTC
TCCCCCACTTTCTTCCGCGTCCTTTCTCCAGATATCCTACCTACGCTCAT
GGCAAGTACACCCTTCATCCTGCGAATCCGCCAATGCCTGGTGCAACACC
GAGGGGCGACGTCAGAAAAAAGTCGATTTCTCATTTCGCTCAATATCTTA
AAGTACTGCTCCTCGATTCCTGGCCTATGGCTGCCCCTCCTCCTTGCCCC
CCATTACGCAACCCGACAAATTGAACGTGTATTGCTGTGGGTACTGTTAG
TTAATTCTTTGTATTCTTTTCTATGGGATGTCATCATGGATTGGGGTCTA
GGACACATCAACCTGAGCGGCCACGGTAGCAGCAGCAGCAGCACCAGTGG
CGGCGGTAGGAAAGGCGGGGGAGGGGAAAGAAGTCCGTCATCGAGATTAA
GGCATTGGGGCCTGAGGCCGACATTGTTATTTGGGTCGGCGGGGTCTTAT
TATGCGGCCATTGGGTTGGATTTGGTGCTTCGGTTGGTGTGGGTGTTGAA
GTACGTGGAGTTTGACCACCGGCTTTCATATGATAAATTCATGTTGTTGA
TTGAGGGGTTGGAGGTGCTCAGGAGAGGGGTATGGTCGATATATAGGATT
GAGTGGGAGTGTTTGAATTTGACGGGGGGTAGGAGGGTGGAGGGTGGGGG
AGGGATAAGTATGGTGGATGTTGGAAAGGGGGGACTGGCAGGAGGAGGAG
GGTTTGTGGGAAAGAAGGGAGTGGGAGGTCATGATAGTGATGAAAGTGTT
GACTTGGAGAGGTCGTTTGGGATGGATGAGGATGACATTGGAATGGAGGT
GACGAGTAAATTGTTGTCGCGTTGATATGGTTGATTTCATGAATTTTGGA
GTAATGGGGAGGAGGATTGAAAGGGAAGAGCGCTCTCAGGATGGAGGGGA
GGAAAAAGAGTTGAGATGTGTGAGTGCGACTGTCCCATGTCTTAGTGTAG
TCCCAGAAGTAGTGTCTGTTTTATAACGGAAAAATGGTTTTTAAATGTAT
GTATATAATAAGTCAGAGGGGGCAAGGACGGCAACCGACCTTTCCTCCTC
GCTAACATAGTACTCTCACGTGAACGAAACGATAAAAAGTATTTTGGCCT
CCCTTCTTTCTCCTCGGTGATTGAGGACAGAAGAAGGAAAATATAGTGAA
ATTAACTCAAGAATAATGCGGAAC
back to top

Coding sequence (CDS) from alignment at chr5:816824..818797+

>NO05G03150.1 ID=NO05G03150.1|Name=NO05G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr5:816824..818797+ (Nannochloropsis oceanica)
ATGGAAGTCGGTGGGGGCGAGACGGTGGAGAGTGTGCTGAAGCGGCTTGA
ACAGAAGAGCGAATACGCCGTGGTACGAGGAACATGCGTAGGCATTCTCT
TCATTTCCCTGTGGGCTCTCAACCTGCACGTCTTTAAGGTTGCACACATC
GACATCTCCTGCATATACCCGGCGAAGCTCGTGCCAAACGCGACAGGGAT
CAACAGTAATGGTAGCGGAGGAGCGAGTGGCGGGCCAAGTTCCAGCAACA
GCAGCGGCTGTACCAACAGCAGCGGCAGCAACATCAGCAACACCACCTCG
AGCAGCAGCAGAATATCCCATTCCGCCCTTCAACAACCCCACCAGCCCGT
GTGCCACCCGCGCAAGGTCGTTGGTCTTGTTACGTCATTAATCATGGGCA
TGGTGGTATGCACCCTCCTTATGTCGGAGCTTCTGGGTCAACCCTACCAA
CACGCCCCCTTTGTCTTCTACTTTCTTCTCCTCGCCGCCCTCCTCTATCC
CTTTGACACAACCCGGGTCTTCCGCGAGTTCGCTGTCCTCTTCGGGCGGG
TACTCTGGCTCGTCTTCTTCCCTGGAAGCGAAGTGCATTTCCTAGAAGTC
CTAGTGGGTGATATATTGACCAGCATGTCCAAAGTCTTTTTCGAAATCGG
TCTCGCTTGTGTTGCGACTCTCCTCGCCCTCTCCCCCACTTTCTTCCGCG
TCCTTTCTCCAGATATCCTACCTACGCTCATGGCAAGTACACCCTTCATC
CTGCGAATCCGCCAATGCCTGGTGCAACACCGAGGGGCGACGTCAGAAAA
AAGTCGATTTCTCATTTCGCTCAATATCTTAAAGTACTGCTCCTCGATTC
CTGGCCTATGGCTGCCCCTCCTCCTTGCCCCCCATTACGCAACCCGACAA
ATTGAACGTGTATTGCTGTGGGTACTGTTAGTTAATTCTTTGTATTCTTT
TCTATGGGATGTCATCATGGATTGGGGTCTAGGACACATCAACCTGAGCG
GCCACGGTAGCAGCAGCAGCAGCACCAGTGGCGGCGGTAGGAAAGGCGGG
GGAGGGGAAAGAAGTCCGTCATCGAGATTAAGGCATTGGGGCCTGAGGCC
GACATTGTTATTTGGGTCGGCGGGGTCTTATTATGCGGCCATTGGGTTGG
ATTTGGTGCTTCGGTTGGTGTGGGTGTTGAAGTACGTGGAGTTTGACCAC
CGGCTTTCATATGATAAATTCATGTTGTTGATTGAGGGGTTGGAGGTGCT
CAGGAGAGGGGTATGGTCGATATATAGGATTGAGTGGGAGTGTTTGAATT
TGACGGGGGGTAGGAGGGTGGAGGGTGGGGGAGGGATAAGTATGGTGGAT
GTTGGAAAGGGGGGACTGGCAGGAGGAGGAGGGTTTGTGGGAAAGAAGGG
AGTGGGAGGTCATGATAGTGATGAAAGTGTTGACTTGGAGAGGTCGTTTG
GGATGGATGAGGATGACATTGGAATGGAGGTGACGAGTAAATTGTTGTCG
CGTTGA
back to top
Synonyms
Publications