NO05G02990.1, NO05G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02990.1
Unique NameNO05G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr5:779903..780784 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:779903..780784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02990.1 vs.
Match: EWM28123.1 (uba thif-type nad fad binding fold domain deoxiribonuclease [Nannochloropsis gaditana])

HSP 1 Score: 312.0 bits (798), Expect = 2.000e-81
Identity = 169/304 (55.59%), Postives = 207/304 (68.09%), Query Frame = 0 
Query:    1 MLLVDSHCHIHKGKSGTGALTGGRGEKDSWKTQPTLFEGDTTCVVASNAEKLDCGDVILYCSMAVEEGDWAMLIS------------MEEQGQQHKAVAAGGLGIHPWKAHEAKPGWESRLREALIRRPSLLVGEIGLDKSREADKTGWEIQLKMFEEQMELAAELRRPVSIHCVRAYGTVYDWLKKRPMATECPPSLAFHSYTGSPEMAAAFLALPHLKGSVFFGFSLSVCLRSPATETRLYNVLSVLPRESLLLESDLDDRCAVRVAMMRMCEVVARATGVQRQSLAEITTRNAERFLRRAL 293
            M+LVD+HCHIH+  +G  A +    ++ +    PT           S A++       LYC MAVEE DW+ L++            +++  Q  K V A GLGIHPWK    K GWE RL+EAL R P+L+VGEIGLDK+ E+ K  WE Q K+FE QM+LAAELRRPVS+HCVRAYG VY+WLK R  A E PPS+AFHSYTGS +MA AFL L HL+GSVFFGFS +VCLR PA E +L  VL +LP+ESLLLESDLDDR AV  AM  +C+VVA   G++R  LAE+TT+NAERFLRRAL
Sbjct:    1 MILVDTHCHIHRWGNGEVAASPAYTKRGNNVRNPTRMASGGNDFDNSTADQYIHP---LYCLMAVEEADWSGLLAISGRDRKEKKPLLQDVSQDTKEVVAVGLGIHPWKTQSVKSGWEGRLKEALERDPTLIVGEIGLDKAGESGKKSWEEQRKIFELQMKLAAELRRPVSVHCVRAYGIVYEWLKGR-SAAELPPSVAFHSYTGSLDMAGAFLRLEHLQGSVFFGFSAAVCLRYPAAEAKLRQVLPILPKESLLLESDLDDREAVPGAMNTICDVVAEVKGMERNVLAEVTTKNAERFLRRAL 300
The following BLAST results are available for this feature:
BLAST of NO05G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28123.12.000e-8155.59uba thif-type nad fad binding fold domain deoxirib... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02990NO05G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02990.1NO05G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02990.1.cds1NO05G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02990.1 ID=NO05G02990.1|Name=NO05G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGCTCCTGGTAGATTCACACTGCCACATTCACAAGGGGAAGAGCGGGAC
GGGAGCTCTGACGGGAGGTCGAGGGGAGAAGGACTCTTGGAAGACGCAGC
CAACTCTATTCGAAGGAGATACTACTTGCGTTGTTGCTTCGAACGCAGAA
AAGCTTGACTGCGGCGATGTTATCTTGTACTGTTCTATGGCTGTTGAGGA
AGGGGATTGGGCCATGCTCATATCCATGGAAGAGCAGGGACAGCAGCATA
AGGCAGTCGCCGCCGGGGGCTTGGGCATTCACCCTTGGAAAGCACACGAA
GCAAAACCAGGATGGGAATCGCGGTTACGAGAAGCCTTGATCCGAAGACC
AAGCCTCCTCGTGGGCGAAATTGGATTGGACAAGTCAAGAGAAGCAGACA
AGACGGGTTGGGAGATCCAGCTGAAAATGTTTGAAGAACAAATGGAACTT
GCAGCCGAGCTGCGGCGGCCCGTCTCCATACACTGCGTGCGCGCGTACGG
CACCGTCTATGACTGGCTCAAAAAGCGACCGATGGCAACCGAATGCCCCC
CTTCCTTGGCTTTCCACTCTTATACCGGCTCACCCGAAATGGCCGCTGCA
TTTCTAGCTCTGCCTCATCTGAAAGGCAGCGTCTTCTTTGGCTTTTCCCT
TTCTGTCTGTTTGCGGTCCCCGGCGACCGAAACTAGACTTTACAACGTCT
TGAGCGTGCTTCCCCGGGAAAGTTTGCTTTTGGAATCGGATTTGGACGAT
CGATGTGCTGTTCGGGTGGCGATGATGCGGATGTGTGAAGTGGTGGCACG
AGCGACAGGAGTACAGAGACAGTCCCTGGCAGAGATTACAACCAGAAATG
CCGAAAGATTTTTGAGGCGCGCATTAGTGTAG
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protein sequence of NO05G02990.1

>NO05G02990.1-protein ID=NO05G02990.1-protein|Name=NO05G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLLVDSHCHIHKGKSGTGALTGGRGEKDSWKTQPTLFEGDTTCVVASNAE
KLDCGDVILYCSMAVEEGDWAMLISMEEQGQQHKAVAAGGLGIHPWKAHE
AKPGWESRLREALIRRPSLLVGEIGLDKSREADKTGWEIQLKMFEEQMEL
AAELRRPVSIHCVRAYGTVYDWLKKRPMATECPPSLAFHSYTGSPEMAAA
FLALPHLKGSVFFGFSLSVCLRSPATETRLYNVLSVLPRESLLLESDLDD
RCAVRVAMMRMCEVVARATGVQRQSLAEITTRNAERFLRRALV*
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mRNA from alignment at chr5:779903..780784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02990.1 ID=NO05G02990.1|Name=NO05G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr5:779903..780784- (Nannochloropsis oceanica)
ATGCTCCTGGTAGATTCACACTGCCACATTCACAAGGGGAAGAGCGGGAC
GGGAGCTCTGACGGGAGGTCGAGGGGAGAAGGACTCTTGGAAGACGCAGC
CAACTCTATTCGAAGGAGATACTACTTGCGTTGTTGCTTCGAACGCAGAA
AAGCTTGACTGCGGCGATGTTATCTTGTACTGTTCTATGGCTGTTGAGGA
AGGGGATTGGGCCATGCTCATATCCATGGAAGAGCAGGGACAGCAGCATA
AGGCAGTCGCCGCCGGGGGCTTGGGCATTCACCCTTGGAAAGCACACGAA
GCAAAACCAGGATGGGAATCGCGGTTACGAGAAGCCTTGATCCGAAGACC
AAGCCTCCTCGTGGGCGAAATTGGATTGGACAAGTCAAGAGAAGCAGACA
AGACGGGTTGGGAGATCCAGCTGAAAATGTTTGAAGAACAAATGGAACTT
GCAGCCGAGCTGCGGCGGCCCGTCTCCATACACTGCGTGCGCGCGTACGG
CACCGTCTATGACTGGCTCAAAAAGCGACCGATGGCAACCGAATGCCCCC
CTTCCTTGGCTTTCCACTCTTATACCGGCTCACCCGAAATGGCCGCTGCA
TTTCTAGCTCTGCCTCATCTGAAAGGCAGCGTCTTCTTTGGCTTTTCCCT
TTCTGTCTGTTTGCGGTCCCCGGCGACCGAAACTAGACTTTACAACGTCT
TGAGCGTGCTTCCCCGGGAAAGTTTGCTTTTGGAATCGGATTTGGACGAT
CGATGTGCTGTTCGGGTGGCGATGATGCGGATGTGTGAAGTGGTGGCACG
AGCGACAGGAGTACAGAGACAGTCCCTGGCAGAGATTACAACCAGAAATG
CCGAAAGATTTTTGAGGCGCGCATTAGTGTAG
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Coding sequence (CDS) from alignment at chr5:779903..780784-

>NO05G02990.1 ID=NO05G02990.1|Name=NO05G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr5:779903..780784- (Nannochloropsis oceanica)
ATGCTCCTGGTAGATTCACACTGCCACATTCACAAGGGGAAGAGCGGGAC
GGGAGCTCTGACGGGAGGTCGAGGGGAGAAGGACTCTTGGAAGACGCAGC
CAACTCTATTCGAAGGAGATACTACTTGCGTTGTTGCTTCGAACGCAGAA
AAGCTTGACTGCGGCGATGTTATCTTGTACTGTTCTATGGCTGTTGAGGA
AGGGGATTGGGCCATGCTCATATCCATGGAAGAGCAGGGACAGCAGCATA
AGGCAGTCGCCGCCGGGGGCTTGGGCATTCACCCTTGGAAAGCACACGAA
GCAAAACCAGGATGGGAATCGCGGTTACGAGAAGCCTTGATCCGAAGACC
AAGCCTCCTCGTGGGCGAAATTGGATTGGACAAGTCAAGAGAAGCAGACA
AGACGGGTTGGGAGATCCAGCTGAAAATGTTTGAAGAACAAATGGAACTT
GCAGCCGAGCTGCGGCGGCCCGTCTCCATACACTGCGTGCGCGCGTACGG
CACCGTCTATGACTGGCTCAAAAAGCGACCGATGGCAACCGAATGCCCCC
CTTCCTTGGCTTTCCACTCTTATACCGGCTCACCCGAAATGGCCGCTGCA
TTTCTAGCTCTGCCTCATCTGAAAGGCAGCGTCTTCTTTGGCTTTTCCCT
TTCTGTCTGTTTGCGGTCCCCGGCGACCGAAACTAGACTTTACAACGTCT
TGAGCGTGCTTCCCCGGGAAAGTTTGCTTTTGGAATCGGATTTGGACGAT
CGATGTGCTGTTCGGGTGGCGATGATGCGGATGTGTGAAGTGGTGGCACG
AGCGACAGGAGTACAGAGACAGTCCCTGGCAGAGATTACAACCAGAAATG
CCGAAAGATTTTTGAGGCGCGCATTAGTGTAG
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Synonyms
Publications