NO05G02960.1, NO05G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02960.1
Unique NameNO05G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr5:773648..775000 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:773648..775000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02960.1 vs.
Match: EWM28106.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 2.000e-80
Identity = 210/361 (58.17%), Postives = 234/361 (64.82%), Query Frame = 0 
Query:    1 MMMTGPLGAPHPHHPLSLPPRGG-----VGVGIG-SGLNTPGRG-GVKGGSEAGSDGSSAYGGGGAPYWMMGAHTHGAHGHQQQQSQQQSQQQSQQQHQASTHGHGPPSHFPYQPGPLPATMTTMIGGMQHHQYMPYGAVGGHPYMYYQPYFGAAGAQG-GQVPPSGGAGAGAAGG--VGSPFVYGRGGGREGGRGIPSEAGLPSGGGHSSPYSSSSREGSSGGGGAGSKPLEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRIGGGGEGGGGNQAGPTTPSSISSSISYLTQR-GHSSSHGGGGEEGG 351
            MM+ GPLG  H  HP +LP RGG      G G+G +GL+  GRG G  GG EA   GSS Y G  APYWM+G H                      Q QAS       +HFP+Q GP+P  M     G+ HHQY+PYGAV   PY+YY PYFG  G QG G     GG  +G AGG   GSPFVYG  GG  GG  + +  G P G GH+  ++S       GGGG GSKPLEGP GANLFIYHLPHDLTDADLATAFNPFGTV+SAKVYVDKN+GESKGFGFVSYD+P AADAAIKAMNGFQIGTKRLKVQHKRI  G          P+TPSSISSSISYLTQ+ GHSS+HGGG   GG
Sbjct:  245 MMVPGPLG--HSLHPPNLPLRGGSEGGAAGGGLGVAGLSPTGRGKGGGGGGEAPGGGSSPYSG--APYWMLGPHG---------------------QPQAS-------AHFPFQAGPVPMGML----GLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQGHGAAADGGGGSSGRAGGGGPGSPFVYG--GGVPGGMRVNTAVGAPHGAGHAGAFASR------GGGGGGSKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRIVSG--------PSPSTPSSISSSISYLTQQHGHSSTHGGGPGAGG 553
The following BLAST results are available for this feature:
BLAST of NO05G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28106.12.000e-8058.17rna binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02960NO05G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02960.1NO05G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02960.1.cds1NO05G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02960.1 ID=NO05G02960.1|Name=NO05G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp
ATGATGATGACTGGACCGTTGGGTGCGCCCCACCCTCACCATCCTCTTTC
GTTGCCACCAAGAGGAGGGGTAGGAGTAGGAATAGGAAGTGGATTAAATA
CACCAGGTAGGGGGGGCGTGAAGGGAGGAAGTGAAGCAGGGAGTGATGGC
TCGTCGGCGTATGGAGGGGGAGGAGCACCGTACTGGATGATGGGCGCACA
TACACATGGGGCTCATGGACATCAACAGCAGCAGTCACAGCAGCAGTCAC
AGCAGCAGTCACAGCAGCAGCACCAAGCAAGCACACACGGCCATGGGCCT
CCATCGCATTTCCCTTACCAGCCGGGGCCCTTGCCAGCAACCATGACGAC
GATGATAGGGGGAATGCAACACCACCAGTACATGCCTTATGGTGCCGTAG
GTGGACACCCTTACATGTATTATCAGCCTTATTTTGGCGCGGCAGGGGCA
CAGGGAGGGCAAGTACCACCATCAGGGGGGGCAGGAGCAGGAGCAGCCGG
GGGGGTGGGATCGCCGTTTGTGTATGGAAGGGGAGGAGGGAGGGAAGGAG
GACGAGGAATACCTTCGGAGGCAGGGCTACCGTCTGGGGGGGGACATTCG
AGTCCTTATTCTTCGTCGTCAAGAGAAGGGAGTAGTGGAGGAGGGGGGGC
AGGGTCGAAGCCATTGGAAGGGCCTCCGGGTGCAAATTTGTTTATTTACC
ATCTGCCTCATGATTTGACCGACGCTGACTTGGCGACTGCATTTAATCCG
TTCGGAACTGTGATCAGTGCGAAGGTGTATGTGGATAAGAACACGGGGGA
GAGTAAGGGATTTGGGTTTGTGTCGTATGACGCCCCCCCTGCTGCGGATG
CTGCCATCAAGGCCATGAACGGCTTTCAGATCGGGACGAAGCGCCTCAAA
GTCCAACACAAGCGCATTGGTGGTGGAGGAGAGGGAGGAGGAGGGAATCA
GGCAGGTCCCACCACCCCTTCCTCTATCTCGTCCTCGATCTCCTACTTGA
CGCAGCGTGGGCACAGCAGTAGTCATGGAGGGGGAGGAGAGGAGGGAGGT
GTTGACAGCAGCAACAGCAGCAACAGCACTCATCATCACTCGAGCCAACC
CCCTTCCACCGCTTGTCGCACCCCATCCTCCTCTTCCTCTCCCCCCTCTT
CGGAACCAGCATGCAAGAAGGAAGCGGCTGCTGCAGGGGAGAGCAGTAGT
AGCAGTAAAGGAACGTGGGGTGCGGGAGGGAAAGGTGGTAAGTCGCCAGG
ATCGGCTGCATCATCGCCGTCAAAGCGGAGAGAAGGGATAGGAGGAAGGG
AGAAGGCGGGAGAAGATTCGCTGGAACAGGGGGTTGAGGGGCTGAAGCTA
TGA
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protein sequence of NO05G02960.1

>NO05G02960.1-protein ID=NO05G02960.1-protein|Name=NO05G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MMMTGPLGAPHPHHPLSLPPRGGVGVGIGSGLNTPGRGGVKGGSEAGSDG
SSAYGGGGAPYWMMGAHTHGAHGHQQQQSQQQSQQQSQQQHQASTHGHGP
PSHFPYQPGPLPATMTTMIGGMQHHQYMPYGAVGGHPYMYYQPYFGAAGA
QGGQVPPSGGAGAGAAGGVGSPFVYGRGGGREGGRGIPSEAGLPSGGGHS
SPYSSSSREGSSGGGGAGSKPLEGPPGANLFIYHLPHDLTDADLATAFNP
FGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLK
VQHKRIGGGGEGGGGNQAGPTTPSSISSSISYLTQRGHSSSHGGGGEEGG
VDSSNSSNSTHHHSSQPPSTACRTPSSSSSPPSSEPACKKEAAAAGESSS
SSKGTWGAGGKGGKSPGSAASSPSKRREGIGGREKAGEDSLEQGVEGLKL
*
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mRNA from alignment at chr5:773648..775000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02960.1 ID=NO05G02960.1|Name=NO05G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at chr5:773648..775000+ (Nannochloropsis oceanica)
ATGATGATGACTGGACCGTTGGGTGCGCCCCACCCTCACCATCCTCTTTC
GTTGCCACCAAGAGGAGGGGTAGGAGTAGGAATAGGAAGTGGATTAAATA
CACCAGGTAGGGGGGGCGTGAAGGGAGGAAGTGAAGCAGGGAGTGATGGC
TCGTCGGCGTATGGAGGGGGAGGAGCACCGTACTGGATGATGGGCGCACA
TACACATGGGGCTCATGGACATCAACAGCAGCAGTCACAGCAGCAGTCAC
AGCAGCAGTCACAGCAGCAGCACCAAGCAAGCACACACGGCCATGGGCCT
CCATCGCATTTCCCTTACCAGCCGGGGCCCTTGCCAGCAACCATGACGAC
GATGATAGGGGGAATGCAACACCACCAGTACATGCCTTATGGTGCCGTAG
GTGGACACCCTTACATGTATTATCAGCCTTATTTTGGCGCGGCAGGGGCA
CAGGGAGGGCAAGTACCACCATCAGGGGGGGCAGGAGCAGGAGCAGCCGG
GGGGGTGGGATCGCCGTTTGTGTATGGAAGGGGAGGAGGGAGGGAAGGAG
GACGAGGAATACCTTCGGAGGCAGGGCTACCGTCTGGGGGGGGACATTCG
AGTCCTTATTCTTCGTCGTCAAGAGAAGGGAGTAGTGGAGGAGGGGGGGC
AGGGTCGAAGCCATTGGAAGGGCCTCCGGGTGCAAATTTGTTTATTTACC
ATCTGCCTCATGATTTGACCGACGCTGACTTGGCGACTGCATTTAATCCG
TTCGGAACTGTGATCAGTGCGAAGGTGTATGTGGATAAGAACACGGGGGA
GAGTAAGGGATTTGGGTTTGTGTCGTATGACGCCCCCCCTGCTGCGGATG
CTGCCATCAAGGCCATGAACGGCTTTCAGATCGGGACGAAGCGCCTCAAA
GTCCAACACAAGCGCATTGGTGGTGGAGGAGAGGGAGGAGGAGGGAATCA
GGCAGGTCCCACCACCCCTTCCTCTATCTCGTCCTCGATCTCCTACTTGA
CGCAGCGTGGGCACAGCAGTAGTCATGGAGGGGGAGGAGAGGAGGGAGGT
GTTGACAGCAGCAACAGCAGCAACAGCACTCATCATCACTCGAGCCAACC
CCCTTCCACCGCTTGTCGCACCCCATCCTCCTCTTCCTCTCCCCCCTCTT
CGGAACCAGCATGCAAGAAGGAAGCGGCTGCTGCAGGGGAGAGCAGTAGT
AGCAGTAAAGGAACGTGGGGTGCGGGAGGGAAAGGTGGTAAGTCGCCAGG
ATCGGCTGCATCATCGCCGTCAAAGCGGAGAGAAGGGATAGGAGGAAGGG
AGAAGGCGGGAGAAGATTCGCTGGAACAGGGGGTTGAGGGGCTGAAGCTA
TGA
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Coding sequence (CDS) from alignment at chr5:773648..775000+

>NO05G02960.1 ID=NO05G02960.1|Name=NO05G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr5:773648..775000+ (Nannochloropsis oceanica)
ATGATGATGACTGGACCGTTGGGTGCGCCCCACCCTCACCATCCTCTTTC
GTTGCCACCAAGAGGAGGGGTAGGAGTAGGAATAGGAAGTGGATTAAATA
CACCAGGTAGGGGGGGCGTGAAGGGAGGAAGTGAAGCAGGGAGTGATGGC
TCGTCGGCGTATGGAGGGGGAGGAGCACCGTACTGGATGATGGGCGCACA
TACACATGGGGCTCATGGACATCAACAGCAGCAGTCACAGCAGCAGTCAC
AGCAGCAGTCACAGCAGCAGCACCAAGCAAGCACACACGGCCATGGGCCT
CCATCGCATTTCCCTTACCAGCCGGGGCCCTTGCCAGCAACCATGACGAC
GATGATAGGGGGAATGCAACACCACCAGTACATGCCTTATGGTGCCGTAG
GTGGACACCCTTACATGTATTATCAGCCTTATTTTGGCGCGGCAGGGGCA
CAGGGAGGGCAAGTACCACCATCAGGGGGGGCAGGAGCAGGAGCAGCCGG
GGGGGTGGGATCGCCGTTTGTGTATGGAAGGGGAGGAGGGAGGGAAGGAG
GACGAGGAATACCTTCGGAGGCAGGGCTACCGTCTGGGGGGGGACATTCG
AGTCCTTATTCTTCGTCGTCAAGAGAAGGGAGTAGTGGAGGAGGGGGGGC
AGGGTCGAAGCCATTGGAAGGGCCTCCGGGTGCAAATTTGTTTATTTACC
ATCTGCCTCATGATTTGACCGACGCTGACTTGGCGACTGCATTTAATCCG
TTCGGAACTGTGATCAGTGCGAAGGTGTATGTGGATAAGAACACGGGGGA
GAGTAAGGGATTTGGGTTTGTGTCGTATGACGCCCCCCCTGCTGCGGATG
CTGCCATCAAGGCCATGAACGGCTTTCAGATCGGGACGAAGCGCCTCAAA
GTCCAACACAAGCGCATTGGTGGTGGAGGAGAGGGAGGAGGAGGGAATCA
GGCAGGTCCCACCACCCCTTCCTCTATCTCGTCCTCGATCTCCTACTTGA
CGCAGCGTGGGCACAGCAGTAGTCATGGAGGGGGAGGAGAGGAGGGAGGT
GTTGACAGCAGCAACAGCAGCAACAGCACTCATCATCACTCGAGCCAACC
CCCTTCCACCGCTTGTCGCACCCCATCCTCCTCTTCCTCTCCCCCCTCTT
CGGAACCAGCATGCAAGAAGGAAGCGGCTGCTGCAGGGGAGAGCAGTAGT
AGCAGTAAAGGAACGTGGGGTGCGGGAGGGAAAGGTGGTAAGTCGCCAGG
ATCGGCTGCATCATCGCCGTCAAAGCGGAGAGAAGGGATAGGAGGAAGGG
AGAAGGCGGGAGAAGATTCGCTGGAACAGGGGGTTGAGGGGCTGAAGCTA
TGA
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Synonyms
Publications