NO05G02910.1, NO05G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02910.1
Unique NameNO05G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr5:763460..764584 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:763460..764584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02910.1 vs.
Match: EWM28158.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 480.7 bits (1236), Expect = 4.100e-132
Identity = 225/281 (80.07%), Postives = 248/281 (88.26%), Query Frame = 0 
Query:   93 SGGNKKRPWVPPKFVQEALGHLPIVEDGQHPQKRFYRSRAHCNPLSHNDAFEYPPNPDAMDWCPLYPALANPTVRFLDVGCGFGGLTVALSTLFPEKVVLALEIRAKVCEFVRLRIQEMRKESPPRAENANVLKTNAMKYLPHFFHKGQLEKIFFCFPDPHFKAKNHRRRIISERLLTEYAYLLAEGGLLYAITDVEELHHWHVAKLTEHASFERIPDERLVGDVTVAAITNETEEGKKVERAKGKKFLCVFRRRPDAVVIQEMKQSWPEWTGENEEKEEE 374
            SGG+ KRPWVPPKFVQEALGHLP+VEDGQHPQKRFYRSRAHCNPLSHNDA EYPP+P  M+W  LYP L +P VRFLDVGCGFGGLTVALS LFP+K++LALEIRAKVCEFVRLRI+EMRKE+ PRA NA VLKTNAMKYLPHFF KGQL+KIFFCFPDPHFK KNHRRRI+SERLLTEYAYLL EGG+LYAITDVEELH WHVAKL+EH SFER+P+E L GDVTV AIT ETEE KKVERA G+K+ CVFRRRPDAVVI   ++ WP W+ + E+ EEE
Sbjct:   12 SGGSMKRPWVPPKFVQEALGHLPLVEDGQHPQKRFYRSRAHCNPLSHNDACEYPPHPGKMNWSVLYPGLTDPVVRFLDVGCGFGGLTVALSALFPDKIILALEIRAKVCEFVRLRIEEMRKEASPRARNAAVLKTNAMKYLPHFFRKGQLQKIFFCFPDPHFKTKNHRRRIVSERLLTEYAYLLQEGGILYAITDVEELHQWHVAKLSEHLSFERVPEETLAGDVTVTAITRETEESKKVERAGGRKYWCVFRRRPDAVVINASRRRWPVWSSDEEKHEEE 292
The following BLAST results are available for this feature:
BLAST of NO05G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28158.14.100e-13280.07trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02910NO05G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02910.1NO05G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02910.1.cds1NO05G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02910.1 ID=NO05G02910.1|Name=NO05G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGAGCGGAGGCCTACCAAGCCCTAGTAATTTCTACGCATTGTTGATACA
CACCACAAACTATCACACCGAATTAAAGGAGAACTTGTGCTCTAGTTGTA
ATAACCTCCCCACACCTCCCAACTTACTATCATTCTACCATCCAGAGCCA
CCACCAACATCAGCACCACCAATTGCAGCAGCAGCCACAGCAGCCGCAGC
AGCCACAGCAGCCACAGCAGCCATGTCTGACACTCAACACAATGGAGGAG
ACGCCGGGGCCAGTAGCAGCAATGATAGCGGCGGGAATAAGAAAAGGCCT
TGGGTGCCACCCAAGTTTGTGCAGGAGGCGCTGGGTCACTTGCCAATTGT
TGAGGACGGACAACATCCCCAGAAGCGTTTTTATCGTTCCCGCGCGCATT
GTAACCCCTTATCCCACAACGATGCCTTCGAGTATCCTCCCAACCCTGAT
GCAATGGATTGGTGCCCGCTCTACCCCGCCCTTGCCAACCCCACTGTGCG
CTTCTTGGATGTTGGCTGCGGGTTCGGCGGCCTGACAGTGGCGCTCTCAA
CTCTCTTCCCCGAAAAAGTGGTTTTGGCCTTAGAAATCCGAGCCAAGGTG
TGCGAATTTGTGCGTCTCCGCATTCAGGAAATGCGGAAGGAGTCCCCCCC
CCGGGCTGAGAACGCCAACGTCCTCAAAACCAACGCCATGAAATACCTTC
CCCACTTCTTTCACAAAGGCCAACTCGAGAAGATTTTCTTCTGCTTCCCC
GATCCACATTTCAAAGCCAAGAACCACCGGCGCCGGATTATCAGTGAGCG
ATTGCTGACTGAGTATGCCTATTTGCTCGCGGAAGGCGGACTTCTTTACG
CCATCACCGACGTGGAAGAGCTCCACCATTGGCATGTGGCCAAGCTTACG
GAACACGCTAGCTTCGAGCGGATTCCTGACGAGCGATTGGTAGGGGACGT
CACGGTTGCAGCAATTACCAACGAGACGGAGGAAGGCAAGAAGGTAGAGC
GCGCGAAGGGCAAGAAATTTTTGTGCGTCTTTCGAAGACGCCCTGACGCG
GTGGTGATCCAGGAAATGAAGCAGAGCTGGCCGGAGTGGACAGGAGAGAA
CGAAGAGAAGGAAGAGGAAGAATAG
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protein sequence of NO05G02910.1

>NO05G02910.1-protein ID=NO05G02910.1-protein|Name=NO05G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MSGGLPSPSNFYALLIHTTNYHTELKENLCSSCNNLPTPPNLLSFYHPEP
PPTSAPPIAAAATAAAAATAATAAMSDTQHNGGDAGASSSNDSGGNKKRP
WVPPKFVQEALGHLPIVEDGQHPQKRFYRSRAHCNPLSHNDAFEYPPNPD
AMDWCPLYPALANPTVRFLDVGCGFGGLTVALSTLFPEKVVLALEIRAKV
CEFVRLRIQEMRKESPPRAENANVLKTNAMKYLPHFFHKGQLEKIFFCFP
DPHFKAKNHRRRIISERLLTEYAYLLAEGGLLYAITDVEELHHWHVAKLT
EHASFERIPDERLVGDVTVAAITNETEEGKKVERAKGKKFLCVFRRRPDA
VVIQEMKQSWPEWTGENEEKEEEE*
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mRNA from alignment at chr5:763460..764584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02910.1 ID=NO05G02910.1|Name=NO05G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at chr5:763460..764584+ (Nannochloropsis oceanica)
ATGAGCGGAGGCCTACCAAGCCCTAGTAATTTCTACGCATTGTTGATACA
CACCACAAACTATCACACCGAATTAAAGGAGAACTTGTGCTCTAGTTGTA
ATAACCTCCCCACACCTCCCAACTTACTATCATTCTACCATCCAGAGCCA
CCACCAACATCAGCACCACCAATTGCAGCAGCAGCCACAGCAGCCGCAGC
AGCCACAGCAGCCACAGCAGCCATGTCTGACACTCAACACAATGGAGGAG
ACGCCGGGGCCAGTAGCAGCAATGATAGCGGCGGGAATAAGAAAAGGCCT
TGGGTGCCACCCAAGTTTGTGCAGGAGGCGCTGGGTCACTTGCCAATTGT
TGAGGACGGACAACATCCCCAGAAGCGTTTTTATCGTTCCCGCGCGCATT
GTAACCCCTTATCCCACAACGATGCCTTCGAGTATCCTCCCAACCCTGAT
GCAATGGATTGGTGCCCGCTCTACCCCGCCCTTGCCAACCCCACTGTGCG
CTTCTTGGATGTTGGCTGCGGGTTCGGCGGCCTGACAGTGGCGCTCTCAA
CTCTCTTCCCCGAAAAAGTGGTTTTGGCCTTAGAAATCCGAGCCAAGGTG
TGCGAATTTGTGCGTCTCCGCATTCAGGAAATGCGGAAGGAGTCCCCCCC
CCGGGCTGAGAACGCCAACGTCCTCAAAACCAACGCCATGAAATACCTTC
CCCACTTCTTTCACAAAGGCCAACTCGAGAAGATTTTCTTCTGCTTCCCC
GATCCACATTTCAAAGCCAAGAACCACCGGCGCCGGATTATCAGTGAGCG
ATTGCTGACTGAGTATGCCTATTTGCTCGCGGAAGGCGGACTTCTTTACG
CCATCACCGACGTGGAAGAGCTCCACCATTGGCATGTGGCCAAGCTTACG
GAACACGCTAGCTTCGAGCGGATTCCTGACGAGCGATTGGTAGGGGACGT
CACGGTTGCAGCAATTACCAACGAGACGGAGGAAGGCAAGAAGGTAGAGC
GCGCGAAGGGCAAGAAATTTTTGTGCGTCTTTCGAAGACGCCCTGACGCG
GTGGTGATCCAGGAAATGAAGCAGAGCTGGCCGGAGTGGACAGGAGAGAA
CGAAGAGAAGGAAGAGGAAGAATAG
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Coding sequence (CDS) from alignment at chr5:763460..764584+

>NO05G02910.1 ID=NO05G02910.1|Name=NO05G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr5:763460..764584+ (Nannochloropsis oceanica)
ATGAGCGGAGGCCTACCAAGCCCTAGTAATTTCTACGCATTGTTGATACA
CACCACAAACTATCACACCGAATTAAAGGAGAACTTGTGCTCTAGTTGTA
ATAACCTCCCCACACCTCCCAACTTACTATCATTCTACCATCCAGAGCCA
CCACCAACATCAGCACCACCAATTGCAGCAGCAGCCACAGCAGCCGCAGC
AGCCACAGCAGCCACAGCAGCCATGTCTGACACTCAACACAATGGAGGAG
ACGCCGGGGCCAGTAGCAGCAATGATAGCGGCGGGAATAAGAAAAGGCCT
TGGGTGCCACCCAAGTTTGTGCAGGAGGCGCTGGGTCACTTGCCAATTGT
TGAGGACGGACAACATCCCCAGAAGCGTTTTTATCGTTCCCGCGCGCATT
GTAACCCCTTATCCCACAACGATGCCTTCGAGTATCCTCCCAACCCTGAT
GCAATGGATTGGTGCCCGCTCTACCCCGCCCTTGCCAACCCCACTGTGCG
CTTCTTGGATGTTGGCTGCGGGTTCGGCGGCCTGACAGTGGCGCTCTCAA
CTCTCTTCCCCGAAAAAGTGGTTTTGGCCTTAGAAATCCGAGCCAAGGTG
TGCGAATTTGTGCGTCTCCGCATTCAGGAAATGCGGAAGGAGTCCCCCCC
CCGGGCTGAGAACGCCAACGTCCTCAAAACCAACGCCATGAAATACCTTC
CCCACTTCTTTCACAAAGGCCAACTCGAGAAGATTTTCTTCTGCTTCCCC
GATCCACATTTCAAAGCCAAGAACCACCGGCGCCGGATTATCAGTGAGCG
ATTGCTGACTGAGTATGCCTATTTGCTCGCGGAAGGCGGACTTCTTTACG
CCATCACCGACGTGGAAGAGCTCCACCATTGGCATGTGGCCAAGCTTACG
GAACACGCTAGCTTCGAGCGGATTCCTGACGAGCGATTGGTAGGGGACGT
CACGGTTGCAGCAATTACCAACGAGACGGAGGAAGGCAAGAAGGTAGAGC
GCGCGAAGGGCAAGAAATTTTTGTGCGTCTTTCGAAGACGCCCTGACGCG
GTGGTGATCCAGGAAATGAAGCAGAGCTGGCCGGAGTGGACAGGAGAGAA
CGAAGAGAAGGAAGAGGAAGAATAG
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Synonyms
Publications