NO05G02760.1, NO05G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02760.1
Unique NameNO05G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2321
Alignment locationchr5:724500..727015 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:724500..727015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02760.1 vs.
Match: EWM28269.1 (amino acid transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 399.1 bits (1024), Expect = 1.500e-107
Identity = 217/277 (78.34%), Postives = 239/277 (86.28%), Query Frame = 0 
Query:    1 MNENGKGDTMQSPLRLRGLPVALDTSKETKKKGFGFLVAVAFTVNYIMGTGFLTLPFATAQAGSVLAFVALFSMAALSNIAKDYVLESSARAELIENPHCFSTDGRAGGEVTPALVRQIHSSQDLPLLLTVKKRKYEMPTLCQLFLGHYGKVFYMLCLSVYIYGALLAYGTVFANSVAAMFPLPAPHAEVSYVLYLGLFAVLVIPLSCLELTEQISVQVALAFCRVLMVVCMVGSVAAALV-SGEADYFPSLTGEGGAVGIPLWNWKGLPVFLPIAC 277
            M E      + SPLRLRGL VA++ S  +KKKGFGF+VAVAFTVNYIMGTGFLTLP+ATAQ GSVLA VALFSMAALSNIAKDYVLESSARAELIENP CF T+G+AGG VTPALVR+IH SQDLPLLLTVKKRKYEMPTLCQLFLG++GKV YM+CLS+YIYGALLAYGTVFANSVAAMFPLPAPHA+ +Y +YLGLFAVLVIPLSCLELTEQISVQ+ALA CR+LMV CMVGSV AA   +GE+  FP    +   VGIPLW W G+PVFLPIAC
Sbjct:    1 MEERNDEKALLSPLRLRGLRVAVEDSS-SKKKGFGFVVAVAFTVNYIMGTGFLTLPYATAQTGSVLAIVALFSMAALSNIAKDYVLESSARAELIENPSCFLTEGQAGGIVTPALVRRIHISQDLPLLLTVKKRKYEMPTLCQLFLGYHGKVLYMICLSIYIYGALLAYGTVFANSVAAMFPLPAPHADATYGVYLGLFAVLVIPLSCLELTEQISVQMALASCRLLMVACMVGSVLAACAHTGES--FPE---QQEPVGIPLWRWDGMPVFLPIAC 271
The following BLAST results are available for this feature:
BLAST of NO05G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28269.11.500e-10778.34amino acid transporter, partial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02760NO05G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02760.1NO05G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02760.1.cds1NO05G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02760.1 ID=NO05G02760.1|Name=NO05G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2321bp
TACAAATAGAATCCGGTGAGTTGCTCGCCGAGTTCGCTTCGGACGCGATG
CCCCGACGGGGCCCGTCGCAGCGTAAGACTCAGTGCACGATAACCACCGA
AACCCCCACATACACTAGGCTCTCGTACTATTGGTGATGCCCTTTTAATT
GCCGGGTTTTGCTCGGGCGCAGAATCTCACCGAATCCCCCAGCACTATGT
ATGCCTTATTTGACCTTCGAGTCGTGAGAGTGTCTGCCAATGCCCGCCCC
TCCAACACCACCACACACGAATCGATGTATCTTTCAGAGGCTGCCGTAGC
TCTTGTGACAGCACTATGCCTTTCCGCAAAGCGAGTGCCCCTATAGCCTT
ATTGCGCGCGGCGAAGCACTTGGTGGACAGCAGGGCTTCAAAGTTTTCCT
CAGCACGGTCATGTATGGGAACGCGCTTTAAGGAGGCGCGCGCGTACAAC
CTACTCATTCAATGAGTTTAGTTTGCGGGCGAGTCGTGCCTCACCTCATT
TCTGCAACCTTTCTTCAACGCTGACCGATGCCCTTGGATCTCTACACACA
GGGACTTACGCTCAAACTACATTCCTGCTCCCCCACAGCGACAACCGGTG
CATCAGGACGCCATGAACGAGAATGGCAAAGGCGACACAATGCAGTCGCC
CTTGCGTCTACGTGGCCTTCCCGTGGCGTTAGACACCAGCAAGGAAACAA
AAAAGAAAGGCTTTGGTTTTTTGGTTGCGGTTGCCTTCACCGTAAACTAC
ATCATGGGCACGGGATTTCTCACCTTACCGTTTGCTACAGCCCAAGCTGG
TTCTGTCCTCGCCTTCGTGGCGCTTTTTTCCATGGCGGCCTTAAGCAACA
TCGCGAAGGATTACGTGCTCGAGAGCAGTGCCAGGGCAGAGCTGATAGAA
AACCCCCACTGCTTCTCCACGGACGGCCGCGCCGGTGGAGAGGTGACACC
TGCGCTTGTCCGGCAAATTCACTCTTCCCAGGATCTCCCCTTGCTTTTGA
CGGTCAAAAAACGCAAGTACGAGATGCCAACGCTTTGCCAGCTCTTCTTG
GGACACTATGGCAAGGTTTTTTACATGCTCTGTCTTTCCGTTTATATCTA
CGGGGCATTGCTTGCGTACGGCACCGTGTTTGCCAATTCCGTTGCAGCCA
TGTTTCCCCTTCCGGCCCCGCACGCCGAAGTCTCTTACGTACTTTACTTG
GGCCTCTTCGCCGTTCTTGTCATCCCACTTTCTTGCCTGGAACTGACCGA
GCAAATATCAGTACAGGTCGCGTTGGCCTTTTGCCGTGTGCTCATGGTGG
TGTGCATGGTGGGCTCCGTGGCCGCCGCTCTTGTCAGCGGCGAGGCTGAT
TATTTCCCCAGCCTTACTGGTGAGGGTGGGGCTGTTGGGATACCGCTGTG
GAATTGGAAGGGACTACCCGTTTTCTTGCCAATTGCGTGTTATTCGTTTA
TCTATCATCACTCTATTGCAGGGTTGAGTCATCCTGTGCGGGACAAGACC
TTGCTAGGCCAAATCTTCTTAGCCACCTTTGTAATTTGTAGTTTATCGTA
TGGACTGATTGCTGTCTTTGTGGCGCATTATTTCGGGCCGGAGATGGCAC
AGTCGTCAAATTTGGAATGGGATGGGTACGGACGCACGGCTTTTGGCAAG
GCAGTTGGGACATACGTGCTGCTGTTTCCGGCTTTGGACGTGGCAAGTAC
GTGGTAGCTCGGAGTGGGTAGAACATAAAGAGGGTGCCTTTCCCCTGAAC
GCCATCACGTTGGGCAACAACATGCTCGATATGGGAAACACCCAACAAAA
CGATATCGATTGTCAAAGCGCAGGTCCACCTCTAAGAGTGAAGACGGTGG
GATTCCGCCTCTTGGCCGCGGTGCCACCTCTGGTGGTGGCCGTCTTCGTG
CGTGACCTCGGCCGTATTTCCGAATATGCTGGGACTGTGGGGATAGTCAT
AACCCTTGTCTTTCCCGCTCTCCTCAACCTCCGCTCTCGCACGCTGATGA
AGGAGGTCTTCCAACTGGATTCGGCACGGACTTACTATTCAAATGAATTG
TCAAGAAAGCGATATGGGCCCGTGAATTTGATCATTGGCCTGGGCTTGTT
CTTTTACATTCTTGTCAATTTGCTGATGGAGTGAAAGCGTTCGCGTTAAA
AGAGCCTTTTGCGCACCGTGTGATATTTGTGTACAGATGACATATGGAAT
GAGAGCACGCCCCCGCTGCCACCATTAGCACGCCGATGGCCGTTGCCTGA
TCTGCAAAACTTACTGTCTGTTAGATCAAAGCAGTAATACAAAAATGCGA
TGCGTAATGTCTAAATGCTTG
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protein sequence of NO05G02760.1

>NO05G02760.1-protein ID=NO05G02760.1-protein|Name=NO05G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MNENGKGDTMQSPLRLRGLPVALDTSKETKKKGFGFLVAVAFTVNYIMGT
GFLTLPFATAQAGSVLAFVALFSMAALSNIAKDYVLESSARAELIENPHC
FSTDGRAGGEVTPALVRQIHSSQDLPLLLTVKKRKYEMPTLCQLFLGHYG
KVFYMLCLSVYIYGALLAYGTVFANSVAAMFPLPAPHAEVSYVLYLGLFA
VLVIPLSCLELTEQISVQVALAFCRVLMVVCMVGSVAAALVSGEADYFPS
LTGEGGAVGIPLWNWKGLPVFLPIACYSFIYHHSIAGLSHPVRDKTLLGQ
IFLATFVICSLSYGLIAVFVAHYFGPEMAQSSNLEWDGYGRTAFGKAVGT
YVLLFPALDVASTW*
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mRNA from alignment at chr5:724500..727015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02760.1 ID=NO05G02760.1|Name=NO05G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2516bp|location=Sequence derived from alignment at chr5:724500..727015- (Nannochloropsis oceanica)
TACAAATAGAATCCGGTGAGTTGCTCGCCGAGTTCGCTTCGGACGCGATG
CCCCGACGGGGCCCGTCGCAGCGTAAGACTCAGTGCACGATAACCACCGA
AACCCCCACATACACTAGGCTCTCGTACTATTGGTGATGCCCTTTTAATT
GCCGGGTTTTGCTCGGGCGCAGAATCTCACCGAATCCCCCAGCACTATGT
ATGCCTTATTTGACCTTCGAGTCGTGAGAGTGTCTGCCAATGCCCGCCCC
TCCAACACCACCACACACGAATCGATGTATCTTTCAGAGGCTGCCGTAGC
TCTTGTGACAGCACTATGCCTTTCCGCAAAGCGAGTGCCCCTATAGCCTT
ATTGCGCGCGGCGAAGCACTTGGTGGACAGCAGGGCTTCAAAGTTTTCCT
CAGCACGGTCATGTATGGGAACGCGCTTTAAGGAGGCGCGCGCGTACAAC
CTACTCATTCAATGAGTTTAGTTTGCGGGCGAGTCGTGCCTCACCTCATT
TCTGCAACCTTTCTTCAACGCTGACCGATGCCCTTGGATCTCTACACACA
GGGACTTACGCTCAAACTACATTCCTGCTCCCCCACAGCGACAACCGGTG
CATCAGGACGCCATGAACGAGAATGGCAAAGGCGACACAATGCAGTCGCC
CTTGCGTCTACGTGGCCTTCCCGTGGCGTTAGACACCAGCAAGGAAACAA
AAAAGAAAGGCTTTGGTTTTTTGGTTGCGGTTGCCTTCACCGTAAACTAC
ATCATGGGCACGGGATTTCTCACCTTACCGTTTGCTACAGCCCAAGCTGG
TTCTGTCCTCGCCTTCGTGGCGCTTTTTTCCATGGCGGCCTTAAGCAACA
TCGCGAAGGATTACGTGCTCGAGAGCAGTGCCAGGGCAGAGCTGATAGAA
AACCCCCACTGCTTCTCCACGGACGGCCGCGCCGGTGGAGAGGTGACACC
TGCGCTTGTCCGGCAAATTCACTCTTCCCAGGATCTCCCCTTGCTTTTGA
CGGTCAAAAAACGCAAGTACGAGATGCCAACGCTTTGCCAGCTCTTCTTG
GGACACTATGGCAAGGTTTTTTACATGCTCTGTCTTTCCGTTTATATCTA
CGGGGCATTGCTTGCGTACGGCACCGTGTTTGCCAATTCCGTTGCAGCCA
TGTTTCCCCTTCCGGCCCCGCACGCCGAAGTCTCTTACGTACTTTACTTG
GGCCTCTTCGCCGTTCTTGTCATCCCACTTTCTTGCCTGGAACTGACCGA
GCAAATATCAGTACAGGTCGCGTTGGCCTTTTGCCGTGTGCTCATGGTGG
TGTGCATGGTGGGCTCCGTGGCCGCCGCTCTTGTCAGCGGCGAGGCTGAT
TATTTCCCCAGCCTTACTGGTGAGGGTGGGGCTGTTGGGATACCGCTGTG
GAATTGGAAGGGACTACCCGTTTTCTTGCCAATTGCGTGTTATTCGTTTA
TCTATCATCACTCTATTGCAGGGTTGAGTCATCCTGTGCGGGACAAGACC
TTGCTAGGCCAAATCTTCTTAGCCACCTTTGTAATTTGTAGTTTATCGTA
TGGACTGATTGCTGTCTTTGTGGCGCATTATTTCGGGCCGGAGATGGCAC
AGTCGTCAAATTTGGAATGGGATGGGTACGGACGCACGGCTTTTGGCAAG
GCAGTTGGGACATACGTGCTGCTGTTTCCGGCTTTGGACGTGGCAAGTAC
GTGGTAGCTCGGAGTGGGTAGAACATAAAGAGGGTGAGGAGAAAGAAAAG
GAGAGCATGAGTTGTTTGTCCAAAGCATCACACTTCTTAGGGCATGGTCG
AAAACAACAGCAGTATGAGTTGTTTGTCCAAAGCATCACACTTCTTAGGG
CATGGTGGAAAACAACAGCATACCGGATATTTACTCCTTGTAACCTTTTC
TCATTCTCTTCTTCACCCCCATGAGTAGGTGCCTTTCCCCTGAACGCCAT
CACGTTGGGCAACAACATGCTCGATATGGGAAACACCCAACAAAACGATA
TCGATTGTCAAAGCGCAGGTCCACCTCTAAGAGTGAAGACGGTGGGATTC
CGCCTCTTGGCCGCGGTGCCACCTCTGGTGGTGGCCGTCTTCGTGCGTGA
CCTCGGCCGTATTTCCGAATATGCTGGGACTGTGGGGATAGTCATAACCC
TTGTCTTTCCCGCTCTCCTCAACCTCCGCTCTCGCACGCTGATGAAGGAG
GTCTTCCAACTGGATTCGGCACGGACTTACTATTCAAATGAATTGTCAAG
AAAGCGATATGGGCCCGTGAATTTGATCATTGGCCTGGGCTTGTTCTTTT
ACATTCTTGTCAATTTGCTGATGGAGTGAAAGCGTTCGCGTTAAAAGAGC
CTTTTGCGCACCGTGTGATATTTGTGTACAGATGACATATGGAATGAGAG
CACGCCCCCGCTGCCACCATTAGCACGCCGATGGCCGTTGCCTGATCTGC
AAAACTTACTGTCTGTTAGATCAAAGCAGTAATACAAAAATGCGATGCGT
AATGTCTAAATGCTTG
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Coding sequence (CDS) from alignment at chr5:724500..727015-

>NO05G02760.1 ID=NO05G02760.1|Name=NO05G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr5:724500..727015- (Nannochloropsis oceanica)
ATGAACGAGAATGGCAAAGGCGACACAATGCAGTCGCCCTTGCGTCTACG
TGGCCTTCCCGTGGCGTTAGACACCAGCAAGGAAACAAAAAAGAAAGGCT
TTGGTTTTTTGGTTGCGGTTGCCTTCACCGTAAACTACATCATGGGCACG
GGATTTCTCACCTTACCGTTTGCTACAGCCCAAGCTGGTTCTGTCCTCGC
CTTCGTGGCGCTTTTTTCCATGGCGGCCTTAAGCAACATCGCGAAGGATT
ACGTGCTCGAGAGCAGTGCCAGGGCAGAGCTGATAGAAAACCCCCACTGC
TTCTCCACGGACGGCCGCGCCGGTGGAGAGGTGACACCTGCGCTTGTCCG
GCAAATTCACTCTTCCCAGGATCTCCCCTTGCTTTTGACGGTCAAAAAAC
GCAAGTACGAGATGCCAACGCTTTGCCAGCTCTTCTTGGGACACTATGGC
AAGGTTTTTTACATGCTCTGTCTTTCCGTTTATATCTACGGGGCATTGCT
TGCGTACGGCACCGTGTTTGCCAATTCCGTTGCAGCCATGTTTCCCCTTC
CGGCCCCGCACGCCGAAGTCTCTTACGTACTTTACTTGGGCCTCTTCGCC
GTTCTTGTCATCCCACTTTCTTGCCTGGAACTGACCGAGCAAATATCAGT
ACAGGTCGCGTTGGCCTTTTGCCGTGTGCTCATGGTGGTGTGCATGGTGG
GCTCCGTGGCCGCCGCTCTTGTCAGCGGCGAGGCTGATTATTTCCCCAGC
CTTACTGGTGAGGGTGGGGCTGTTGGGATACCGCTGTGGAATTGGAAGGG
ACTACCCGTTTTCTTGCCAATTGCGTGTTATTCGTTTATCTATCATCACT
CTATTGCAGGGTTGAGTCATCCTGTGCGGGACAAGACCTTGCTAGGCCAA
ATCTTCTTAGCCACCTTTGTAATTTGTAGTTTATCGTATGGACTGATTGC
TGTCTTTGTGGCGCATTATTTCGGGCCGGAGATGGCACAGTCGTCAAATT
TGGAATGGGATGGGTACGGACGCACGGCTTTTGGCAAGGCAGTTGGGACA
TACGTGCTGCTGTTTCCGGCTTTGGACGTGGCAAGTACGTGGTAG
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Synonyms
Publications