NO05G02720.1, NO05G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02720.1
Unique NameNO05G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1343
Alignment locationchr5:718112..719659 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:718112..719659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02720.1 vs.
Match: EWM28141.1 (hypothetical protein Naga_100036g44 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 6.100e-44
Identity = 174/430 (40.47%), Postives = 228/430 (53.02%), Query Frame = 0 
Query:    1 MSDAAARRRAKILAQRGNRMKLVSGLGAAIAQEGKDEETAATTAAAVGPAGRLAADGEGGKATAPEGTCGSETGGVRALNRRRLQARNILLSTATLAAADSVQKEQQQVENSNLGDTNVAASAEASSCSPSPRSPSSPPHPTVLASMALTASATLTTGGNTLRKRYHASR-GDNDDIVEKTTTKNGSTTLRVGPPSP-PSLLKTLTASDAMVRFWLLCLAGVISGIWITVLNATFLADLRMQAQRQQ--QHEARAALDEFVAKASPSLHFPPSESG-----GGGSTKRLGW--LAWFHGLFLPEAFDSLPLPILALVWHGVALISMMALR---SGGAANASLQGAWTEAGQEDPLLGEGESYSNKGFSGSGSVGGDGGSPGESANRSIVETVASSLGLGWVLEGWKVAQTAWQDVLIFSFFFLLAVAACA 417
            MSDAAARRR +IL+   +RMKLVSG   +  Q+  + +     A  +   G+  A+       +  GT  S+  G+RA NRRRLQARNI + T     AD +   Q  +      DT +  S + SS      SPS  P+     S + T +  LTTGGN LRKR+ ASR GD       T    G ++    P SP PSLL+ LTASD ++R W LC AG++ G+W+  LNAT LA +R     +    H+AR ALDEFVA        PP+  G     G     R+G   L     LFLPE FDS PLP++AL+ HGV + S+  LR     G A  +++  W       PL GEG      G SG     G   S  + ++RS++ ++A + GLG  LE  KV Q AWQD+LIFSFFFLLA+A CA
Sbjct:    1 MSDAAARRRTRILSGSKDRMKLVSG---SSIQDKSEVDAPPEAAYDLASGGKEEAEDSN---VSEVGT--SKEAGIRARNRRRLQARNIKIETVP-TEADHLNAGQSDMPPGT-NDTPLGGSEKRSS------SPSLLPYEGFSHSASNTGA--LTTGGNVLRKRFQASRYGDRG--ATATDANAGVSSRPENPTSPAPSLLQALTASDVLLRLWPLCAAGLLFGVWVAGLNATVLARVRGSTGMESPAHHQARDALDEFVANVGAIS--PPNIGGDKDYLGLWDRDRIGANVLRRIRNLFLPEVFDSFPLPLIALILHGVLIFSLGMLRVTSRKGTAGDNIKD-WASTV---PLEGEGG-----GESGREGETGAKASLDQVSDRSMLASLAHTFGLGPALEALKVLQAAWQDMLIFSFFFLLALALCA 399
The following BLAST results are available for this feature:
BLAST of NO05G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28141.16.100e-4440.47hypothetical protein Naga_100036g44 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02720NO05G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02720.1NO05G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02720.1.cds1NO05G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02720.1.cds2NO05G02720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02720.1.cds3NO05G02720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02720.1 ID=NO05G02720.1|Name=NO05G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
AACACAAAGAGCACAGTTATGAGCGATGCAGCAGCCCGTCGACGGGCCAA
GATTCTGGCACAAAGGGGTAACCGGATGAAGCTGGTGTCGGGCTTGGGGG
CCGCGATTGCACAGGAGGGCAAGGACGAAGAAACAGCAGCCACTACCGCT
GCCGCTGTGGGCCCTGCAGGAAGACTTGCTGCAGATGGAGAGGGGGGGAA
AGCGACAGCGCCTGAGGGCACTTGCGGCAGTGAGACAGGCGGCGTTCGCG
CACTGAATCGACGACGCTTGCAGGCCCGTAACATTCTCCTGTCGACGGCC
ACCTTAGCGGCAGCTGATTCTGTACAAAAAGAGCAGCAGCAAGTAGAAAA
TTCAAATCTTGGGGACACGAATGTCGCGGCGTCTGCGGAGGCCTCGTCGT
GCTCTCCATCCCCCCGTTCCCCGTCTTCCCCTCCACATCCTACTGTGCTT
GCCAGCATGGCTCTCACTGCGTCTGCTACCTTGACAACGGGGGGCAACAC
TCTGCGTAAACGGTATCATGCATCTCGGGGCGACAACGACGACATCGTCG
AGAAAACGACGACCAAAAATGGATCCACCACTCTTCGCGTCGGGCCACCC
TCTCCTCCCTCCCTCCTCAAGACCCTGACTGCCTCGGACGCCATGGTCCG
GTTTTGGCTCCTGTGCCTGGCCGGCGTCATTTCCGGAATCTGGATCACGG
TCTTGAATGCCACTTTTCTAGCAGACCTTCGGATGCAAGCACAGCGGCAG
CAGCAGCACGAAGCCAGAGCGGCATTGGACGAGTTTGTGGCCAAGGCCAG
TCCGTCCCTCCATTTCCCCCCTTCCGAGTCAGGGGGTGGAGGCAGCACCA
AACGACTTGGGTGGTTAGCATGGTTTCATGGGTTATTCTTACCAGAGGCC
TTTGATTCCTTGCCCTTGCCCATCCTGGCATTGGTTTGGCACGGTGTGGC
TTTGATTTCCATGATGGCACTGCGATCAGGAGGAGCGGCAAATGCTAGCT
TGCAGGGAGCATGGACGGAGGCCGGGCAGGAAGATCCGTTGCTAGGGGAA
GGTGAAAGTTATAGCAATAAGGGTTTTAGCGGTAGTGGCAGTGTCGGGGG
TGATGGTGGTTCGCCAGGGGAAAGTGCGAACAGGTCAATTGTTGAGACGG
TAGCGAGCTCATTGGGGTTGGGGTGGGTGTTGGAGGGATGGAAGGTGGCG
CAGACGGCTTGGCAAGATGTGCTGATATTTAGTTTTTTCTTTCTTTTGGC
TGTGGCGGCTTGTGCATGAAGAGACACACGATCATGTGGACAACAGAGAA
AGCAAAGACAATTTGGAAAGGCGGAATGAAAATTAATGACTAA
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protein sequence of NO05G02720.1

>NO05G02720.1-protein ID=NO05G02720.1-protein|Name=NO05G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSDAAARRRAKILAQRGNRMKLVSGLGAAIAQEGKDEETAATTAAAVGPA
GRLAADGEGGKATAPEGTCGSETGGVRALNRRRLQARNILLSTATLAAAD
SVQKEQQQVENSNLGDTNVAASAEASSCSPSPRSPSSPPHPTVLASMALT
ASATLTTGGNTLRKRYHASRGDNDDIVEKTTTKNGSTTLRVGPPSPPSLL
KTLTASDAMVRFWLLCLAGVISGIWITVLNATFLADLRMQAQRQQQHEAR
AALDEFVAKASPSLHFPPSESGGGGSTKRLGWLAWFHGLFLPEAFDSLPL
PILALVWHGVALISMMALRSGGAANASLQGAWTEAGQEDPLLGEGESYSN
KGFSGSGSVGGDGGSPGESANRSIVETVASSLGLGWVLEGWKVAQTAWQD
VLIFSFFFLLAVAACA*
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mRNA from alignment at chr5:718112..719659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02720.1 ID=NO05G02720.1|Name=NO05G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr5:718112..719659- (Nannochloropsis oceanica)
AACACAAAGAGCACAGTTATGAGCGATGCAGCAGCCCGTCGACGGGCCAA
GATTCTGGCACAAAGGGGTAACCGGATGAAGCTGGTGTCGGGCTTGGGGG
CCGCGATTGCACAGGTAAGCTGATGGATGGAAAGTGCGATTGAAGGCCTG
CTTATGATTGGACCTCTGACCCACCGGCCTCGGTTAGCAGGAGGGCAAGG
ACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCAGGAAGA
CTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGGCACTTG
CGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGCTTGCAGG
CCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGATTCTGTA
CAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACACGAATGT
CGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTTCCCCGT
CTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCACTGCGTCT
GCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATCATGCATC
TCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAAAATGGAT
GTAAGGGAGAGGATGTATGCAGCATGCTTATTTCATCGAAATTATGCTTA
GCGATTGTCCGATAAGCCATATTCTTACATCTTAATACCATTTGCTTGTA
CACCTCTTGCTCCCTTCAACGAAAAACAGCCACCACTCTTCGCGTCGGGC
CACCCTCTCCTCCCTCCCTCCTCAAGACCCTGACTGCCTCGGACGCCATG
GTCCGGTTTTGGCTCCTGTGCCTGGCCGGCGTCATTTCCGGAATCTGGAT
CACGGTCTTGAATGCCACTTTTCTAGCAGACCTTCGGATGCAAGCACAGC
GGCAGCAGCAGCACGAAGCCAGAGCGGCATTGGACGAGTTTGTGGCCAAG
GCCAGTCCGTCCCTCCATTTCCCCCCTTCCGAGTCAGGGGGTGGAGGCAG
CACCAAACGACTTGGGTGGTTAGCATGGTTTCATGGGTTATTCTTACCAG
AGGCCTTTGATTCCTTGCCCTTGCCCATCCTGGCATTGGTTTGGCACGGT
GTGGCTTTGATTTCCATGATGGCACTGCGATCAGGAGGAGCGGCAAATGC
TAGCTTGCAGGGAGCATGGACGGAGGCCGGGCAGGAAGATCCGTTGCTAG
GGGAAGGTGAAAGTTATAGCAATAAGGGTTTTAGCGGTAGTGGCAGTGTC
GGGGGTGATGGTGGTTCGCCAGGGGAAAGTGCGAACAGGTCAATTGTTGA
GACGGTAGCGAGCTCATTGGGGTTGGGGTGGGTGTTGGAGGGATGGAAGG
TGGCGCAGACGGCTTGGCAAGATGTGCTGATATTTAGTTTTTTCTTTCTT
TTGGCTGTGGCGGCTTGTGCATGAAGAGACACACGATCATGTGGACAACA
GAGAAAGCAAAGACAATTTGGAAAGGCGGAATGAAAATTAATGACTAA
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Coding sequence (CDS) from alignment at chr5:718112..719659-

>NO05G02720.1 ID=NO05G02720.1|Name=NO05G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr5:718112..719659- (Nannochloropsis oceanica)
ATGAGCGATGCAGCAGCCCGTCGACGGGCCAAGATTCTGGCACAAAGGGG
TAACCGGATGAAGCTGGTGTCGGGCTTGGGGGCCGCGATTGCACAGGAGG
GCAAGGACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCA
GGAAGACTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGG
CACTTGCGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGCT
TGCAGGCCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGAT
TCTGTACAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACAC
GAATGTCGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTT
CCCCGTCTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCACT
GCGTCTGCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATCA
TGCATCTCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAAA
ATGGATCCACCACTCTTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTC
AAGACCCTGACTGCCTCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCT
GGCCGGCGTCATTTCCGGAATCTGGATCACGGTCTTGAATGCCACTTTTC
TAGCAGACCTTCGGATGCAAGCACAGCGGCAGCAGCAGCACGAAGCCAGA
GCGGCATTGGACGAGTTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCC
CCCTTCCGAGTCAGGGGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAG
CATGGTTTCATGGGTTATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTG
CCCATCCTGGCATTGGTTTGGCACGGTGTGGCTTTGATTTCCATGATGGC
ACTGCGATCAGGAGGAGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGG
AGGCCGGGCAGGAAGATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAAT
AAGGGTTTTAGCGGTAGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGG
GGAAAGTGCGAACAGGTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGT
TGGGGTGGGTGTTGGAGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGAT
GTGCTGATATTTAGTTTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATG
A
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Synonyms
Publications