NO05G02660.1, NO05G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02660.1
Unique NameNO05G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr5:705358..706497 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:705358..706497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02660.1 vs.
Match: EWM28111.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 504.6 bits (1298), Expect = 2.700e-139
Identity = 258/379 (68.07%), Postives = 308/379 (81.27%), Query Frame = 0 
Query:    1 MRPRLTRCESSLQNRRSSSPSSSSKAAAGSKPVPTPRVQFEGFDEAYGPAIGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDTEGGAYFHLRIAHVQEEKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEENVGITIV 380
            +RPRLTRCESSLQNRRSSSPS   ++AAG+  + +PRV+FEGF+E  GPA+GDTLS++Y+PAG+G D+PL++LEEDE ASPCLLYNFNGW+GEETPLRTP+FP+GDGT++ATVH+PNYAKVLDCIVSDGQLAFDTE G +FHLRIAHVQEE+DG VYNF QG+DGS+TLTGV+A NDARELERMIE+ELSAR   +   +L   +E  +      + V  + E  L   +  S   G+ +  L E  DAGGEAARQLAS+GS+GVHVAAL+DVGN+PQQLRAEA AVGE LGISSSMIINELRE+FDSVTDA++LT  ELP+AL++MGFD L   ELE LC+ VQG E P   GR L+LEHFMRIF +LD ENVGI IV
Sbjct:   28 IRPRLTRCESSLQNRRSSSPSPR-RSAAGTL-LSSPRVRFEGFEETRGPAVGDTLSIVYDPAGEGADSPLTMLEEDEGASPCLLYNFNGWNGEETPLRTPLFPQGDGTLMATVHVPNYAKVLDCIVSDGQLAFDTEAGQFFHLRIAHVQEERDGTVYNFFQGEDGSITLTGVQADNDARELERMIEEELSARETSSAEGQLF--DEEPEERRFSSSTVADYEESHLSDLEGDSEEAGEGKSPLSEDADAGGEAARQLASSGSLGVHVAALEDVGNVPQQLRAEATAVGEALGISSSMIINELRESFDSVTDADVLTIGELPKALARMGFDGLEAAELEDLCMRVQGTEAP-AAGRCLTLEHFMRIFHLLDTENVGIVIV 401
The following BLAST results are available for this feature:
BLAST of NO05G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28111.12.700e-13968.07expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02660NO05G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02660.1NO05G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02660.1.cds1NO05G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02660.1 ID=NO05G02660.1|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
ATGCGACCACGCTTGACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTC
CTCCTCCCCCTCGTCGTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTC
CCACGCCCCGCGTGCAATTCGAAGGCTTTGACGAGGCATACGGACCCGCA
ATCGGGGATACCTTGTCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGA
TGCCCCCTTGTCGCTGCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCC
TATACAATTTCAATGGGTGGGACGGGGAAGAGACGCCACTGCGGACCCCC
ATGTTTCCTCGGGGGGACGGCACAATGGTGGCCACGGTGCATATTCCTAA
CTATGCCAAGGTTTTGGATTGCATTGTCTCGGACGGCCAACTGGCTTTTG
ATACGGAGGGCGGCGCGTACTTTCATCTTCGCATCGCTCATGTTCAAGAA
GAGAAGGACGGCAAGGTCTACAATTTCTTGCAAGGTGACGATGGTTCCTT
GACCTTGACTGGAGTGGAGGCCGCCAACGACGCCCGAGAATTAGAACGAA
TGATAGAAGACGAGCTGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAA
CTCATGCTGGGCGAGGAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAA
TGTGGTGGCATTCTTGGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGT
CAATCACCGGGGATATTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGA
GGGGAGGCTGCAAGGCAGTTGGCCTCGACGGGATCCATTGGTGTGCATGT
CGCGGCGCTGAAGGACGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGG
CAATCGCAGTGGGGGAGCAGCTGGGGATCAGCTCGAGTATGATTATCAAT
GAGCTGAGAGAGGCATTTGACAGTGTGACGGACGCCGAACTGTTGACCTT
TGCGGAGCTGCCACAAGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCA
CGGAGGAGCTGGAGAAGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCG
AAGGGGGGGGGGAGGTTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTT
CATTTTGGATGAGGAGAATGTGGGGATTACGATTGTGTAG
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protein sequence of NO05G02660.1

>NO05G02660.1-protein ID=NO05G02660.1-protein|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MRPRLTRCESSLQNRRSSSPSSSSKAAAGSKPVPTPRVQFEGFDEAYGPA
IGDTLSVIYNPAGQGEDAPLSLLEEDEAASPCLLYNFNGWDGEETPLRTP
MFPRGDGTMVATVHIPNYAKVLDCIVSDGQLAFDTEGGAYFHLRIAHVQE
EKDGKVYNFLQGDDGSLTLTGVEAANDARELERMIEDELSARNAGADRPE
LMLGEEVVDGTGVDVANVVAFLEGELEQAQDKSSITGDIEDLLLETGDAG
GEAARQLASTGSIGVHVAALKDVGNIPQQLRAEAIAVGEQLGISSSMIIN
ELREAFDSVTDAELLTFAELPQALSKMGFDRLSTEELEKLCLTVQGLEVP
KGGGRLLSLEHFMRIFFILDEENVGITIV*
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mRNA from alignment at chr5:705358..706497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02660.1 ID=NO05G02660.1|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at chr5:705358..706497+ (Nannochloropsis oceanica)
ATGCGACCACGCTTGACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTC
CTCCTCCCCCTCGTCGTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTC
CCACGCCCCGCGTGCAATTCGAAGGCTTTGACGAGGCATACGGACCCGCA
ATCGGGGATACCTTGTCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGA
TGCCCCCTTGTCGCTGCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCC
TATACAATTTCAATGGGTGGGACGGGGAAGAGACGCCACTGCGGACCCCC
ATGTTTCCTCGGGGGGACGGCACAATGGTGGCCACGGTGCATATTCCTAA
CTATGCCAAGGTTTTGGATTGCATTGTCTCGGACGGCCAACTGGCTTTTG
ATACGGAGGGCGGCGCGTACTTTCATCTTCGCATCGCTCATGTTCAAGAA
GAGAAGGACGGCAAGGTCTACAATTTCTTGCAAGGTGACGATGGTTCCTT
GACCTTGACTGGAGTGGAGGCCGCCAACGACGCCCGAGAATTAGAACGAA
TGATAGAAGACGAGCTGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAA
CTCATGCTGGGCGAGGAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAA
TGTGGTGGCATTCTTGGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGT
CAATCACCGGGGATATTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGA
GGGGAGGCTGCAAGGCAGTTGGCCTCGACGGGATCCATTGGTGTGCATGT
CGCGGCGCTGAAGGACGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGG
CAATCGCAGTGGGGGAGCAGCTGGGGATCAGCTCGAGTATGATTATCAAT
GAGCTGAGAGAGGCATTTGACAGTGTGACGGACGCCGAACTGTTGACCTT
TGCGGAGCTGCCACAAGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCA
CGGAGGAGCTGGAGAAGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCG
AAGGGGGGGGGGAGGTTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTT
CATTTTGGATGAGGAGAATGTGGGGATTACGATTGTGTAG
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Coding sequence (CDS) from alignment at chr5:705358..706497+

>NO05G02660.1 ID=NO05G02660.1|Name=NO05G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at chr5:705358..706497+ (Nannochloropsis oceanica)
ATGCGACCACGCTTGACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTC
CTCCTCCCCCTCGTCGTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTC
CCACGCCCCGCGTGCAATTCGAAGGCTTTGACGAGGCATACGGACCCGCA
ATCGGGGATACCTTGTCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGA
TGCCCCCTTGTCGCTGCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCC
TATACAATTTCAATGGGTGGGACGGGGAAGAGACGCCACTGCGGACCCCC
ATGTTTCCTCGGGGGGACGGCACAATGGTGGCCACGGTGCATATTCCTAA
CTATGCCAAGGTTTTGGATTGCATTGTCTCGGACGGCCAACTGGCTTTTG
ATACGGAGGGCGGCGCGTACTTTCATCTTCGCATCGCTCATGTTCAAGAA
GAGAAGGACGGCAAGGTCTACAATTTCTTGCAAGGTGACGATGGTTCCTT
GACCTTGACTGGAGTGGAGGCCGCCAACGACGCCCGAGAATTAGAACGAA
TGATAGAAGACGAGCTGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAA
CTCATGCTGGGCGAGGAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAA
TGTGGTGGCATTCTTGGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGT
CAATCACCGGGGATATTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGA
GGGGAGGCTGCAAGGCAGTTGGCCTCGACGGGATCCATTGGTGTGCATGT
CGCGGCGCTGAAGGACGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGG
CAATCGCAGTGGGGGAGCAGCTGGGGATCAGCTCGAGTATGATTATCAAT
GAGCTGAGAGAGGCATTTGACAGTGTGACGGACGCCGAACTGTTGACCTT
TGCGGAGCTGCCACAAGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCA
CGGAGGAGCTGGAGAAGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCG
AAGGGGGGGGGGAGGTTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTT
CATTTTGGATGAGGAGAATGTGGGGATTACGATTGTGTAG
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Synonyms
Publications