NO05G02640.1, NO05G02640.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02640.1
Unique Name	NO05G02640.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1965
Alignment location	chr5:699959..701923 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:699959..701923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G02640.1 vs.
Match: EWM28105.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1138.6 bits (2944), Expect = 0.000e+0
Identity = 575/653 (88.06%), Postives = 605/653 (92.65%), Query Frame = 0

Query:    1 MLRISRRLLHAPP-WAGCTLTPPVPRRTAAPHIGLSFN---GFSTLKTGATPPNLIRNVAIIAHIDHGKTTICDRLMGSSAVTAERVMDSMSLEKQRGITIMSKYTRVDFQGHVLNVVDTPGHADFGGEVERVLDMCSGCCLIVCGTEGPMAQSKYVLSKAIEHNLKPIVVINKVDREGARPHEVESEVLDLFISLGAPDELLDYPVLFASAREGWAVRDMDDTDHSRGMAPLLEAIVETVPAPCGPEALAEPFTFAVNSLQTDNFVGRVCLGKVHTGRVKIGDPIKALFREEDGKVLQEGKVTKLFCQRGMDKQEVQQGNAGDILWLAGVEANVADTIAAPEVMAPLQTQKMDPPTLAITFSANDSPLAGKEGKYVTGSHVINRLHKEVENNVSITLVPSSEPESIEVHGRGELQLGIIIETMRREGFELCVSPPKVLTKMCPTTGKTLEPVEEVTVDVDQELSGVVVEKLSARKGHLVHFGDHRGKSRLIFHVPSRGLLGFMNEIKTDTRGSAVVTRLFLEHKASVGQIDALFRGKLISMERGAATAYALNMLEERGVLFVQPGEEVYPGMIIGEHNRPVDLDVNPTKGKKLSNIRTVSADEAIRLTPPVVRVLEEYLAYMNEDEKLEVTPLKMRLRKRELDPGVRARKAK 650
            MLRIS R+L APP W+   L P +P     P +  + N   GFST+ T    PNLIRNVAIIAHIDHGKTTICDRLMGSSAVT +RVMDSMSLEKQRGITIMSKYTRVDF+GHVLNVVDTPGHADFGGEVERVL MCSGCCLIVCGTEGPMAQSKYVLSKAIE NLKPIVVINKVDREG+RPHEVESEVLDLFISLGAPDELLDYPVLFASAREGWAV+DMDDTDHSRGMAPLLEAIV TVP PC PEAL+EPF FAVNSLQTD++VGRVCLGKVHTG+VK+GD IKAL RE+DG VLQEGKVTK+FCQRGM+K  V    AGDILWLAGVEANVADTIAAPEV+ PLQTQKMDPPTLAITFSANDSPLAG+EGKYVTGS VI RLHKEVENNVSITLVPSSEPESIEVHGRGELQLGIIIETMRREGFELCVSPPKVLTK+CP+TGKTLEPVEEVTVDVDQELSG+VVEKLSARKGHLVHFG+HRGKSRL+FHVPSRGLLGFMNEIKTDTRGSAVVTRLFLEHKASVGQIDALF+GKLISMERGAATAYALNMLEERGVLFVQPGEEVYPGMIIGEHNR VDLDVNPTKGKKLSN+R+VSADEAIRLTPP+VRVLEEYLAYMNEDEKLEVTP K+RLRKRELDP VRARK K
Sbjct:    1 MLRISHRVLQAPPPWSTFKLAPRLP-----PPLAWTSNYRKGFSTISTATCDPNLIRNVAIIAHIDHGKTTICDRLMGSSAVTVDRVMDSMSLEKQRGITIMSKYTRVDFEGHVLNVVDTPGHADFGGEVERVLGMCSGCCLIVCGTEGPMAQSKYVLSKAIEQNLKPIVVINKVDREGSRPHEVESEVLDLFISLGAPDELLDYPVLFASAREGWAVQDMDDTDHSRGMAPLLEAIVATVPPPCAPEALSEPFRFAVNSLQTDSYVGRVCLGKVHTGQVKVGDSIKALSREDDGGVLQEGKVTKIFCQRGMEKLAVDAAYAGDILWLAGVEANVADTIAAPEVVVPLQTQKMDPPTLAITFSANDSPLAGQEGKYVTGSQVIGRLHKEVENNVSITLVPSSEPESIEVHGRGELQLGIIIETMRREGFELCVSPPKVLTKVCPSTGKTLEPVEEVTVDVDQELSGIVVEKLSARKGHLVHFGEHRGKSRLVFHVPSRGLLGFMNEIKTDTRGSAVVTRLFLEHKASVGQIDALFKGKLISMERGAATAYALNMLEERGVLFVQPGEEVYPGMIIGEHNRAVDLDVNPTKGKKLSNVRSVSADEAIRLTPPIVRVLEEYLAYMNEDEKLEVTPSKLRLRKRELDPNVRARKGK 648

The following BLAST results are available for this feature:

BLAST of NO05G02640.1 vs.

BLAST of NO05G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28105.1	0.000e+0	88.06	gtp-binding protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02640	NO05G02640	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02640.1	NO05G02640.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02640.1.cds1	NO05G02640.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:699959..701923-
coding sequence from alignment at chr5:699959..701923-

mRNA sequence

>NO05G02640.1 ID=NO05G02640.1|Name=NO05G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
ATGCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTG
TACCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTC
TGTCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAAT
TTGATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTAC
CATCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCA
TGGACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAA
TATACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCC
GGGCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCA
GCGGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGT
AAGTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGT
CATAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCG
AGGTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGAT
TACCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACAT
GGACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTG
TTGAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTT
ACGTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTG
CCTGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGG
CCCTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACA
AAGCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAA
CGCTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACA
CGATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGAC
CCACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGG
GAAGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACA
AGGAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCC
GAGTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAAT
CGAGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAG
TCCTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAA
GAGGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAA
ATTAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCA
AGTCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATG
AACGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATT
TTTGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTA
AGCTTATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATG
TTGGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCC
GGGTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATC
CTACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAG
GCCATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGC
TTACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCT
TGCGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGC
GGCGGGAAGAGGTAA

protein sequence of NO05G02640.1

>NO05G02640.1-protein ID=NO05G02640.1-protein|Name=NO05G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MLRISRRLLHAPPWAGCTLTPPVPRRTAAPHIGLSFNGFSTLKTGATPPN
LIRNVAIIAHIDHGKTTICDRLMGSSAVTAERVMDSMSLEKQRGITIMSK
YTRVDFQGHVLNVVDTPGHADFGGEVERVLDMCSGCCLIVCGTEGPMAQS
KYVLSKAIEHNLKPIVVINKVDREGARPHEVESEVLDLFISLGAPDELLD
YPVLFASAREGWAVRDMDDTDHSRGMAPLLEAIVETVPAPCGPEALAEPF
TFAVNSLQTDNFVGRVCLGKVHTGRVKIGDPIKALFREEDGKVLQEGKVT
KLFCQRGMDKQEVQQGNAGDILWLAGVEANVADTIAAPEVMAPLQTQKMD
PPTLAITFSANDSPLAGKEGKYVTGSHVINRLHKEVENNVSITLVPSSEP
ESIEVHGRGELQLGIIIETMRREGFELCVSPPKVLTKMCPTTGKTLEPVE
EVTVDVDQELSGVVVEKLSARKGHLVHFGDHRGKSRLIFHVPSRGLLGFM
NEIKTDTRGSAVVTRLFLEHKASVGQIDALFRGKLISMERGAATAYALNM
LEERGVLFVQPGEEVYPGMIIGEHNRPVDLDVNPTKGKKLSNIRTVSADE
AIRLTPPVVRVLEEYLAYMNEDEKLEVTPLKMRLRKRELDPGVRARKAKS
GGKR*

mRNA from alignment at chr5:699959..701923-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02640.1 ID=NO05G02640.1|Name=NO05G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at chr5:699959..701923- (Nannochloropsis oceanica)
ATGCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTG
TACCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTC
TGTCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAAT
TTGATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTAC
CATCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCA
TGGACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAA
TATACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCC
GGGCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCA
GCGGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGT
AAGTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGT
CATAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCG
AGGTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGAT
TACCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACAT
GGACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTG
TTGAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTT
ACGTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTG
CCTGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGG
CCCTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACA
AAGCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAA
CGCTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACA
CGATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGAC
CCACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGG
GAAGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACA
AGGAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCC
GAGTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAAT
CGAGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAG
TCCTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAA
GAGGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAA
ATTAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCA
AGTCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATG
AACGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATT
TTTGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTA
AGCTTATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATG
TTGGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCC
GGGTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATC
CTACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAG
GCCATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGC
TTACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCT
TGCGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGC
GGCGGGAAGAGGTAA

Coding sequence (CDS) from alignment at chr5:699959..701923-

>NO05G02640.1 ID=NO05G02640.1|Name=NO05G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1965bp|location=Sequence derived from alignment at chr5:699959..701923- (Nannochloropsis oceanica)
ATGCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTG
TACCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTC
TGTCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAAT
TTGATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTAC
CATCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCA
TGGACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAA
TATACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCC
GGGCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCA
GCGGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGT
AAGTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGT
CATAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCG
AGGTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGAT
TACCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACAT
GGACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTG
TTGAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTT
ACGTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTG
CCTGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGG
CCCTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACA
AAGCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAA
CGCTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACA
CGATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGAC
CCACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGG
GAAGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACA
AGGAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCC
GAGTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAAT
CGAGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAG
TCCTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAA
GAGGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAA
ATTAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCA
AGTCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATG
AACGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATT
TTTGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTA
AGCTTATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATG
TTGGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCC
GGGTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATC
CTACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAG
GCCATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGC
TTACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCT
TGCGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGC
GGCGGGAAGAGGTAA

Synonyms

Publications