NO05G02290.3, NO05G02290.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02290.3
Unique NameNO05G02290.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2161
Alignment locationchr5:608003..610899 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:608003..610899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02290.3 vs.
Match: EWM28260.1 (mitochondrial 3-hydroxyisobutyryl- hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 611.7 bits (1576), Expect = 2.000e-171
Identity = 308/487 (63.24%), Postives = 384/487 (78.85%), Query Frame = 0 
Query:    1 MGLGLARYRVSTEKSTFQVVGPKDGWILDGGLSYLLPRLRVGPAG-SPAFARYLSLTGASLSGLDMLATGLSTHHMEDSMAGQLHNRLADLTFEPDFMVEDVMSEHAAMFYKLDTHLNPPPYHELWAKWAKNDENRKKLMKRASGVMTGFEDDDRWNDHNDDNAWGASRQEVDATVFDAKEEAAMEAFVEEEVEEDPDIRVTLGKMEPLSNVFLARNQALAAEEEDFVG-GGPRQTKSGQPALPSDTAGSLWWHRNFAEGDDAIFNAQWEVIEARIKERVQEEGMEGLGNINEKFMDNFPEYITYPERKRLVDADKVLLSPWDCSVDRAERFPDFMELAEKVEVCFKGESVEEVVEGLRKDNSAWAQECLRRMDSMSSLSLKIVFRQLDEAKEAEIEDVFRMDYRVGQRLLVSHA----RANADGLAGMQNVSADQVSSFFQPFAMGEEELDLPEREQVGEEQPQRRYIDMKLQRRFAKSSTTRGSI 482
            +GLGLARYR+STEKSTF+V GP  GWILDGGLSYLL R + G    + AFARYL+LTGA L+G  MLA G+STHHM+DS+AG LH RLADLTFEPDF+VEDV+SEHA+MFY+ D  LNPPPY ELWA+WAKNDENR++  KRA G  TGF+ D RW ++ND++ W    ++ DAT F+++EEAAMEAF EE  E+DPDIR TLG MEPL NVFLA+   L  EE +  G  GPR  K+ Q +LPSD  GSLWWHRNFA GD+A+F A WE  EARIK+R++EEGME L +++EKF+D FPEYI+YPER RLVD+D+ LLSPW+CSVDRA++F +F EL ++V  CFKG+++EEV+E LR DNS WA+ CL+RMD MS LSL+IVF+QL+EAK+ +IED FRMDYRVGQR+L  +A       + GLAG++++S D V+SFFQ F    EEL LPE+E+VGE QP RR ID++L+RRF ++STTRGSI
Sbjct:  148 IGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRW-ENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEG-EDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPR--KNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI 630
The following BLAST results are available for this feature:
BLAST of NO05G02290.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28260.12.000e-17163.24mitochondrial 3-hydroxyisobutyryl- hydrolase [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02290NO05G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02290.3NO05G02290.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02290.3.cds1NO05G02290.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds2NO05G02290.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds3NO05G02290.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds4NO05G02290.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds5NO05G02290.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds6NO05G02290.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02290.3.cds7NO05G02290.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02290.3 ID=NO05G02290.3|Name=NO05G02290.3|organism=Nannochloropsis oceanica|type=mRNA|length=2161bp
ACAATAGTACCCCTGCTCCCTGCCTCCCATCACCGCACCGTCATCGCACA
GGGGTAGGAGGTATCTTGCTGTGAAAGACGGTAACGGCACACACGCTACG
CAGCAGAGTGACTAGCTTCGTCTTGAGGGCAGCGGGAGGAGCCCAGCATG
ATGCGCTCGCGGCTGGCCAAGCTGGCCGCTGAAGCCAAGAAAATCAAGGT
CGCACCAGCAACGGCCCGGGTAGGGGCGGGCAAGAATGTCAAGCTGGACA
CTCAATACCGCATCTTGGAGTCCCCGGGATGTCGACGCGTGGTGCTGGCT
GGGCCCGAAGGTCGCGTGGACGCCCGTACGGCCGAGTCGTTGCTTTGGAA
GCTGCAATCATGGGAGACCAATTACCTTATTCAGGTACAGTATAAGGCTG
GAAGGAGGAAACGAAGACGACATGCCGCTCATCCTTTCTTATCCTTTTGA
TTCCTCCTCACGTATAGGCCGTCGTACTCCAAGGCAGGCCAGGGAAGGAC
TTCAGTGCAGGCTGGGTGCGCGAGGAAGGGATTGGGCCGAGCGATTTGAC
CGCAAATTTCCGTCGGCATTGTCAGCTGTCTTATTTGCTGGCCACGCTCA
GGAAGCCCACCATTGCCTGGTACACGGGCGATGTGGTTGGAGGGGGTATG
GGGCTGGGCCTGGCCCGCTACCGCGTCTCGACCGAGAAGTCCACCTTTCA
GGTGGTAGGTCCCAAGGACGGCTGGATTTTGGACGGTGGACTGTCCTACC
TGTTGCCCCGCCTGCGCGTCGGCCCAGCAGGCAGCCCGGCGTTCGCCCGA
TACTTGAGCCTGACGGGCGCGTCGCTGTCGGGCTTGGACATGCTGGCCAC
GGGACTGTCGACGCACCACATGGAGGACAGCATGGCGGGGCAGCTGCATA
ATCGCCTAGCGGACTTGACATTCGAGCCGGACTTCATGGTGGAGGACGTG
ATGAGCGAGCACGCTGCTATGTTCTACAAGCTGGACACCCACCTCAATCC
CCCGCCCTATCATGAACTCTGGGCCAAATGGGCCAAGAACGACGAAAACC
GTAAAAAGTTGATGAAGCGTGCCTCAGGCGTCATGACGGGCTTCGAGGAC
GACGATAGGTGGAATGACCATAACGACGATAATGCATGGGGAGCTTCAAG
GCAGGAAGTGGATGCAACGGTATTCGATGCCAAGGAGGAAGCGGCCATGG
AGGCTTTTGTGGAGGAGGAGGTGGAGGAAGATCCGGATATCCGCGTAACG
CTGGGCAAGATGGAGCCCCTTTCCAATGTTTTCTTGGCGCGGAATCAGGC
CTTAGCGGCGGAAGAGGAAGACTTTGTGGGTGGTGGCCCAAGGCAAACGA
AGAGTGGGCAGCCGGCGCTGCCGTCTGATACGGCGGGCTCCTTGTGGTGG
CACCGAAATTTTGCTGAGGGCGATGACGCTATCTTCAATGCGCAATGGGA
AGTTATCGAGGCCCGCATAAAGGAACGGGTCCAAGAGGAGGGTATGGAGG
GCCTGGGCAACATCAATGAGAAGTTCATGGACAACTTTCCTGAGTACATT
ACCTACCCGGAAAGGAAGCGTCTGGTAGACGCCGATAAGGTACTCCTCTC
TCCCTGGGACTGTAGCGTGGACCGGGCGGAGCGTTTCCCCGATTTCATGG
AGCTGGCTGAGAAGGTGGAAGTATGTTTCAAGGGCGAATCGGTGGAGGAG
GTGGTAGAGGGCTTGCGGAAAGACAACTCGGCCTGGGCGCAGGAGTGCTT
GCGGAGGATGGACAGTATGTCGTCTTTGAGTCTCAAGATTGTCTTCCGCC
AGCTGGATGAGGCGAAGGAGGCCGAGATTGAGGATGTCTTTCGTATGGAT
TACCGTGTGGGACAGCGCTTGCTCGTTTCTCATGCACGGGCGAATGCAGA
TGGCTTGGCAGGCATGCAGAATGTGTCCGCTGACCAAGTGTCGAGTTTTT
TCCAGCCGTTTGCAATGGGTGAGGAGGAGCTGGATTTGCCAGAGAGAGAG
CAGGTGGGCGAAGAGCAGCCGCAGCGACGATACATTGACATGAAGCTGCA
ACGGAGATTTGCGAAGAGCAGCACCACAAGGGGGAGTATCTAAGACCGAA
GCACAAGGGTTTGCTGATCGACAGCAAAGTGCAACATATAGGAAAACGAT
TGCATAAAATG
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protein sequence of NO05G02290.3

>NO05G02290.3-protein ID=NO05G02290.3-protein|Name=NO05G02290.3|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MGLGLARYRVSTEKSTFQVVGPKDGWILDGGLSYLLPRLRVGPAGSPAFA
RYLSLTGASLSGLDMLATGLSTHHMEDSMAGQLHNRLADLTFEPDFMVED
VMSEHAAMFYKLDTHLNPPPYHELWAKWAKNDENRKKLMKRASGVMTGFE
DDDRWNDHNDDNAWGASRQEVDATVFDAKEEAAMEAFVEEEVEEDPDIRV
TLGKMEPLSNVFLARNQALAAEEEDFVGGGPRQTKSGQPALPSDTAGSLW
WHRNFAEGDDAIFNAQWEVIEARIKERVQEEGMEGLGNINEKFMDNFPEY
ITYPERKRLVDADKVLLSPWDCSVDRAERFPDFMELAEKVEVCFKGESVE
EVVEGLRKDNSAWAQECLRRMDSMSSLSLKIVFRQLDEAKEAEIEDVFRM
DYRVGQRLLVSHARANADGLAGMQNVSADQVSSFFQPFAMGEEELDLPER
EQVGEEQPQRRYIDMKLQRRFAKSSTTRGSI*
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mRNA from alignment at chr5:608003..610899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02290.3 ID=NO05G02290.3|Name=NO05G02290.3|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp|location=Sequence derived from alignment at chr5:608003..610899- (Nannochloropsis oceanica)
ACAATAGTACCCCTGCTCCCTGCCTCCCATCACCGCACCGTCATCGCACA
GGGGTAGGAGGTATCTTGCTGTGAAAGACGGTAACGGCACACACGCTACG
CAGCAGAGTGACTAGCTTCGTCTTGAGGGCAGCGGGAGGAGCCCAGCATG
ATGCGCTCGCGGCTGGCCAAGCTGGCCGCTGAAGCCAAGAAAATCAAGGT
CGCACCAGCAACGGCCCGGGTAGGGGCGGGCAAGAATGTCAAGCTGGACA
CTCAATACCGCATCTTGGAGTCCCCGGGATGTCGACGCGTGGTGCTGGCT
GGGCCCGAAGGTCGCGTGGACGCCCGTACGGCCGAGTCGTTGCTTTGGAA
GGTATGTCGGTCGATCATGATGAGAGGAGATGCTCGGCGGGTCCCTACAG
CACGCGCCCGCCCGCTTACCTTATACATTTCCCCACTCAAATACCGCACA
GCTGCAATCATGGGAGACCAATTACCTTATTCAGGTACAGTATAAGGCTG
GAAGGAGGAAACGAAGACGACATGCCGCTCATCCTTTCTTATCCTTTTGA
TTCCTCCTCACGTATAGGCCGTCGTACTCCAAGGCAGGCCAGGGAAGGAC
TTCAGTGCAGGCTGGGTGCGCGAGGAAGGGATTGGGCCGAGCGATTTGAC
CGCAAATTTCCGTCGGCATTGTCAGCTGTCTTATTTGCTGGCCACGCTCA
GGAAGCCCACCATTGCCTGGTACACGGGCGATGTGGTTGGAGGGGGTATG
GGGCTGGGCCTGGCCCGCTACCGCGTCTCGACCGAGAAGTCCACCTTTCA
GGTGGTAGGTCCCAAGGACGGCTGGATTTTGGACGGTGGACTGTCCTACC
TGTTGCCCCGCCTGCGCGTCGGCCCAGCAGGCAGCCCGGCGTTCGCCCGA
TACTTGAGCCTGACGGGCGCGTCGCTGTCGGGCTTGGACATGCTGGCCAC
GGGACTGTCGACGCACCACATGGAGGACAGCATGGCGGGGCAGCTGCATA
ATCGCCTAGCGGACTTGACATTCGAGCCGGACTTCATGGTGGAGGACGTG
ATGAGCGAGCACGCTGCTATGTTCTACAAGCTGGACACCCACCTCAATCC
CCCGCCCTATCATGAACTCTGGGCCAAATGGGCCAAGAACGACGAAAACC
GTAAAAAGTACGGCAGATTAGAAGGGTAACGGGAAGTGGACAAATATAAG
GCACAGCACAAGAGCAGCATCTTCATACTTTTGCTCGCGATTTTACGTTT
CTCCATTCATTATTCCCTACCCGCACGTGTTCTAGGTTGATGAAGCGTGC
CTCAGGCGTCATGACGGGCTTCGAGGACGACGATAGGTGGAATGACCATA
ACGACGATAATGCATGGGGAGCTTCAAGGCAGGAAGTGGATGCAACGGTA
TTCGATGCCAAGGAGGAAGCGGCCATGGAGGCTTTTGTGGAGGAGGAGGT
ACGGTGGAAATTGGAACTTGGGAATATGTGTTGTCATCGGTGGAGGAGGA
GAGTTATGTGGAAAGGGGGGCTCGACCTGTTTATTTACTCATTCTTGGCC
TACACCGCACATCCGCAATTGTGCAGGTGGAGGAAGATCCGGATATCCGC
GTAACGCTGGGCAAGATGGAGCCCCTTTCCAATGTTTTCTTGGCGCGGAA
TCAGGCCTTAGCGGCGGAAGAGGAAGACTTTGTGGGTGGTGGCCCAAGGC
AAACGAAGAGTGGGCAGGTGCGTACAACCGGAGAATGATGATGAGCTGCA
TGCGTTTTCCATCTTTTCTCGTATATTTATCGCTCCGTTGTCCCACCAGC
AGCCGGCGCTGCCGTCTGATACGGCGGGCTCCTTGTGGTGGCACCGAAAT
TTTGCTGAGGGCGATGACGCTATCTTCAATGCGCAATGGGAAGTTATCGA
GTACGTCCTCTTTTGGGTGGTTCAATGTGCTTGTGGGAGGCTTCTGGTTC
CAATCACGCGCTGATCATTTCTTATTGCCGTTAACAGGGCCCGCATAAAG
GAACGGGTCCAAGAGGAGGGTATGGAGGGCCTGGGCAACATCAATGAGAA
GTTCATGGACAACTTTCCTGAGTACATTACCTACCCGGAAAGGAAGCGTC
TGGTAGACGCCGATAAGGTAAGGTTTGGTGCTATCATCAGTGCCTATCTC
CTTAGGAAAACCTTGCTATGTGCATTTCAATTTATTCTGCCCTTACAACT
TACCATAATCAATCTCATGTACACAATCATTCTAGGTACTCCTCTCTCCC
TGGGACTGTAGCGTGGACCGGGCGGAGCGTTTCCCCGATTTCATGGAGCT
GGCTGAGAAGGTGGAAGTATGTTTCAAGGGCGAATCGGTGGAGGAGGTGG
TAGAGGGCTTGCGGAAAGACAACTCGGCCTGGGCGCAGGAGTGCTTGCGG
AGGATGGACAGTATGTCGTCTTTGAGGTAAGTTTAAATCCTTTTTTCCTT
GAGTCTTACTTCGATGATTTTTGATCTATCACTGATCCCATGCCGTCCAT
CTTATTGATCAAACAGTCTCAAGATTGTCTTCCGCCAGCTGGATGAGGCG
AAGGAGGCCGAGATTGAGGATGTCTTTCGTATGGATTACCGTGTGGGACA
GCGCTTGCTCGTTTCTCATGCACGGGCGAATGCAGATGGCTTGGCAGGCA
TGCAGAATGTGTCCGCTGACCAAGTGTCGAGTTTTTTCCAGCCGTTTGCA
ATGGGTGAGGAGGAGCTGGATTTGCCAGAGAGAGAGCAGGTGGGCGAAGA
GCAGCCGCAGCGACGATACATTGACATGAAGCTGCAACGGAGATTTGCGA
AGAGCAGCACCACAAGGGGGAGTATCTAAGACCGAAGCACAAGGGTTTGC
TGATCGACAGCAAAGTGCAACATATAGGAAAACGATTGCATAAAATG
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Coding sequence (CDS) from alignment at chr5:608003..610899-

>NO05G02290.3 ID=NO05G02290.3|Name=NO05G02290.3|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr5:608003..610899- (Nannochloropsis oceanica)
ATGGGGCTGGGCCTGGCCCGCTACCGCGTCTCGACCGAGAAGTCCACCTT
TCAGGTGGTAGGTCCCAAGGACGGCTGGATTTTGGACGGTGGACTGTCCT
ACCTGTTGCCCCGCCTGCGCGTCGGCCCAGCAGGCAGCCCGGCGTTCGCC
CGATACTTGAGCCTGACGGGCGCGTCGCTGTCGGGCTTGGACATGCTGGC
CACGGGACTGTCGACGCACCACATGGAGGACAGCATGGCGGGGCAGCTGC
ATAATCGCCTAGCGGACTTGACATTCGAGCCGGACTTCATGGTGGAGGAC
GTGATGAGCGAGCACGCTGCTATGTTCTACAAGCTGGACACCCACCTCAA
TCCCCCGCCCTATCATGAACTCTGGGCCAAATGGGCCAAGAACGACGAAA
ACCGTAAAAAGTTGATGAAGCGTGCCTCAGGCGTCATGACGGGCTTCGAG
GACGACGATAGGTGGAATGACCATAACGACGATAATGCATGGGGAGCTTC
AAGGCAGGAAGTGGATGCAACGGTATTCGATGCCAAGGAGGAAGCGGCCA
TGGAGGCTTTTGTGGAGGAGGAGGTGGAGGAAGATCCGGATATCCGCGTA
ACGCTGGGCAAGATGGAGCCCCTTTCCAATGTTTTCTTGGCGCGGAATCA
GGCCTTAGCGGCGGAAGAGGAAGACTTTGTGGGTGGTGGCCCAAGGCAAA
CGAAGAGTGGGCAGCCGGCGCTGCCGTCTGATACGGCGGGCTCCTTGTGG
TGGCACCGAAATTTTGCTGAGGGCGATGACGCTATCTTCAATGCGCAATG
GGAAGTTATCGAGGCCCGCATAAAGGAACGGGTCCAAGAGGAGGGTATGG
AGGGCCTGGGCAACATCAATGAGAAGTTCATGGACAACTTTCCTGAGTAC
ATTACCTACCCGGAAAGGAAGCGTCTGGTAGACGCCGATAAGGTACTCCT
CTCTCCCTGGGACTGTAGCGTGGACCGGGCGGAGCGTTTCCCCGATTTCA
TGGAGCTGGCTGAGAAGGTGGAAGTATGTTTCAAGGGCGAATCGGTGGAG
GAGGTGGTAGAGGGCTTGCGGAAAGACAACTCGGCCTGGGCGCAGGAGTG
CTTGCGGAGGATGGACAGTATGTCGTCTTTGAGTCTCAAGATTGTCTTCC
GCCAGCTGGATGAGGCGAAGGAGGCCGAGATTGAGGATGTCTTTCGTATG
GATTACCGTGTGGGACAGCGCTTGCTCGTTTCTCATGCACGGGCGAATGC
AGATGGCTTGGCAGGCATGCAGAATGTGTCCGCTGACCAAGTGTCGAGTT
TTTTCCAGCCGTTTGCAATGGGTGAGGAGGAGCTGGATTTGCCAGAGAGA
GAGCAGGTGGGCGAAGAGCAGCCGCAGCGACGATACATTGACATGAAGCT
GCAACGGAGATTTGCGAAGAGCAGCACCACAAGGGGGAGTATCTAA
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Synonyms
Publications