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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:608003..610899 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02290.2 vs.
Match: EWM28260.1 (mitochondrial 3-hydroxyisobutyryl- hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 676.4 bits (1744), Expect = 7.000e-191 Identity = 340/526 (64.64%), Postives = 413/526 (78.52%), Query Frame = 0
Query: 1 MMRSRLAKLAAEAKKIKVAPATARVGAG-KNVKL-----DTQYRILESPGCRRVVLAGPEGRVDARTAESLLWKLQSWETNYLIQAVVLQGRPGKDFSAGWVREEGIG--PSDLTANFRRHCQLSYLLATLRKPTIAWYTGDVVGGGMGLGLARYRVSTEKSTFQVVGPKDGWILDGGLSYLLPRLRVGPAG-SPAFARYLSLTGASLSGLDMLATGLSTHHMEDSMAGQLHNRLADLTFEPDFMVEDVMSEHAAMFYKLDTHLNPPPYHELWAKWAKNDENRKKLMKRASGVMTGFEDDDRWNDHNDDNAWGASRQEVDATVFDAKEEAAMEAFVEEEVEEDPDIRVTLGKMEPLSNVFLARNQALAAEEEDFVG-GGPRQTKSGQPALPSDTAGSLWWHRNFAEGDDAIFNAQWEVIEARIKERVQEEGMEGLGNINEKFMDNFPEYITYPERKRLVDADKVLLSPWDCSVDRAERFPDFMELAEKVEVCFKGESVEEVVEGLRKDNSAWAQECLRRMDSMSSL 517
MMRS+LAKLA EAKK+K AP + +G K + T YRILESPGCRRVVL GP GR+D R AESL+WKLQ+WETNYLIQAV+LQGRPGK FSAGW+ E I S+ + FRR+CQLSY+LATL KPTI+W++GDVVGGG+GLGLARYR+STEKSTF+V GP GWILDGGLSYLL R + G + AFARYL+LTGA L+G MLA G+STHHM+DS+AG LH RLADLTFEPDF+VEDV+SEHA+MFY+ D LNPPPY ELWA+WAKNDENR++ KRA G TGF+ D RW ++ND++ W ++ DAT F+++EEAAMEAF EE E+DPDIR TLG MEPL NVFLA+ L EE + G GPR K+ Q +LPSD GSLWWHRNFA GD+A+F A WE EARIK+R++EEGME L +++EKF+D FPEYI+YPER RLVD+D+ LLSPW+CSVDRA++F +F EL ++V CFKG+++EEV+E LR DNS WA+ CL+RMD MS L
Sbjct: 1 MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRW-ENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEG-EDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPR--KNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPL 522
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02290.2 ID=NO05G02290.2|Name=NO05G02290.2|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp ACAATAGTACCCCTGCTCCCTGCCTCCCATCACCGCACCGTCATCGCACA GGGGTAGGAGGTATCTTGCTGTGAAAGACGGTAACGGCACACACGCTACG CAGCAGAGTGACTAGCTTCGTCTTGAGGGCAGCGGGAGGAGCCCAGCATG ATGCGCTCGCGGCTGGCCAAGCTGGCCGCTGAAGCCAAGAAAATCAAGGT CGCACCAGCAACGGCCCGGGTAGGGGCGGGCAAGAATGTCAAGCTGGACA CTCAATACCGCATCTTGGAGTCCCCGGGATGTCGACGCGTGGTGCTGGCT GGGCCCGAAGGTCGCGTGGACGCCCGTACGGCCGAGTCGTTGCTTTGGAA GCTGCAATCATGGGAGACCAATTACCTTATTCAGGCCGTCGTACTCCAAG GCAGGCCAGGGAAGGACTTCAGTGCAGGCTGGGTGCGCGAGGAAGGGATT GGGCCGAGCGATTTGACCGCAAATTTCCGTCGGCATTGTCAGCTGTCTTA TTTGCTGGCCACGCTCAGGAAGCCCACCATTGCCTGGTACACGGGCGATG TGGTTGGAGGGGGTATGGGGCTGGGCCTGGCCCGCTACCGCGTCTCGACC GAGAAGTCCACCTTTCAGGTGGTAGGTCCCAAGGACGGCTGGATTTTGGA CGGTGGACTGTCCTACCTGTTGCCCCGCCTGCGCGTCGGCCCAGCAGGCA GCCCGGCGTTCGCCCGATACTTGAGCCTGACGGGCGCGTCGCTGTCGGGC TTGGACATGCTGGCCACGGGACTGTCGACGCACCACATGGAGGACAGCAT GGCGGGGCAGCTGCATAATCGCCTAGCGGACTTGACATTCGAGCCGGACT TCATGGTGGAGGACGTGATGAGCGAGCACGCTGCTATGTTCTACAAGCTG GACACCCACCTCAATCCCCCGCCCTATCATGAACTCTGGGCCAAATGGGC CAAGAACGACGAAAACCGTAAAAAGTTGATGAAGCGTGCCTCAGGCGTCA TGACGGGCTTCGAGGACGACGATAGGTGGAATGACCATAACGACGATAAT GCATGGGGAGCTTCAAGGCAGGAAGTGGATGCAACGGTATTCGATGCCAA GGAGGAAGCGGCCATGGAGGCTTTTGTGGAGGAGGAGGTGGAGGAAGATC CGGATATCCGCGTAACGCTGGGCAAGATGGAGCCCCTTTCCAATGTTTTC TTGGCGCGGAATCAGGCCTTAGCGGCGGAAGAGGAAGACTTTGTGGGTGG TGGCCCAAGGCAAACGAAGAGTGGGCAGCCGGCGCTGCCGTCTGATACGG CGGGCTCCTTGTGGTGGCACCGAAATTTTGCTGAGGGCGATGACGCTATC TTCAATGCGCAATGGGAAGTTATCGAGGCCCGCATAAAGGAACGGGTCCA AGAGGAGGGTATGGAGGGCCTGGGCAACATCAATGAGAAGTTCATGGACA ACTTTCCTGAGTACATTACCTACCCGGAAAGGAAGCGTCTGGTAGACGCC GATAAGGTACTCCTCTCTCCCTGGGACTGTAGCGTGGACCGGGCGGAGCG TTTCCCCGATTTCATGGAGCTGGCTGAGAAGGTGGAAGTATGTTTCAAGG GCGAATCGGTGGAGGAGGTGGTAGAGGGCTTGCGGAAAGACAACTCGGCC TGGGCGCAGGAGTGCTTGCGGAGGATGGACAGTATGTCGTCTTTGAGGTA AGTTTAAATCCTTTTTTCCTTGAGTCTTACTTCGATGATTTTTGATCTAT CACTGATCCCATGCCGTCCATCTTATTGATCAAACAGTCTCAAGATTGTC TTCCGCCAGCTGGATGAGGCGAAGGAGGCCGAGATTGAGGATGTCTTTCG TATGGATTACCGTGTGGGACAGCGCTTGCTCGTTTCTCATGCACGGGCGA ATGCAGATGGCTTGGCAGGCATGCAGAATGTGTCCGCTGACCAAGTGTCG AGTTTTTTCCAGCCGTTTGCAATGGGTGAGGAGGAGCTGGATTTGCCAGA GAGAGAGCAGGTGGGCGAAGAGCAGCCGCAGCGACGATACATTGACATGA AGCTGCAACGGAGATTTGCGAAGAGCAGCACCACAAGGGGGAGTATCTAA GACCGAAGCACAAGGGTTTGCTGATCGACAGCAAAGTGCAACATATAGGA AAACGATTGCATAAAATG back to topprotein sequence of NO05G02290.2 >NO05G02290.2-protein ID=NO05G02290.2-protein|Name=NO05G02290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp MMRSRLAKLAAEAKKIKVAPATARVGAGKNVKLDTQYRILESPGCRRVVL AGPEGRVDARTAESLLWKLQSWETNYLIQAVVLQGRPGKDFSAGWVREEG IGPSDLTANFRRHCQLSYLLATLRKPTIAWYTGDVVGGGMGLGLARYRVS TEKSTFQVVGPKDGWILDGGLSYLLPRLRVGPAGSPAFARYLSLTGASLS GLDMLATGLSTHHMEDSMAGQLHNRLADLTFEPDFMVEDVMSEHAAMFYK LDTHLNPPPYHELWAKWAKNDENRKKLMKRASGVMTGFEDDDRWNDHNDD NAWGASRQEVDATVFDAKEEAAMEAFVEEEVEEDPDIRVTLGKMEPLSNV FLARNQALAAEEEDFVGGGPRQTKSGQPALPSDTAGSLWWHRNFAEGDDA IFNAQWEVIEARIKERVQEEGMEGLGNINEKFMDNFPEYITYPERKRLVD ADKVLLSPWDCSVDRAERFPDFMELAEKVEVCFKGESVEEVVEGLRKDNS AWAQECLRRMDSMSSLR* back to topmRNA from alignment at chr5:608003..610899- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02290.2 ID=NO05G02290.2|Name=NO05G02290.2|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp|location=Sequence derived from alignment at chr5:608003..610899- (Nannochloropsis oceanica) ACAATAGTACCCCTGCTCCCTGCCTCCCATCACCGCACCGTCATCGCACA
GGGGTAGGAGGTATCTTGCTGTGAAAGACGGTAACGGCACACACGCTACG
CAGCAGAGTGACTAGCTTCGTCTTGAGGGCAGCGGGAGGAGCCCAGCATG
ATGCGCTCGCGGCTGGCCAAGCTGGCCGCTGAAGCCAAGAAAATCAAGGT
CGCACCAGCAACGGCCCGGGTAGGGGCGGGCAAGAATGTCAAGCTGGACA
CTCAATACCGCATCTTGGAGTCCCCGGGATGTCGACGCGTGGTGCTGGCT
GGGCCCGAAGGTCGCGTGGACGCCCGTACGGCCGAGTCGTTGCTTTGGAA
GGTATGTCGGTCGATCATGATGAGAGGAGATGCTCGGCGGGTCCCTACAG
CACGCGCCCGCCCGCTTACCTTATACATTTCCCCACTCAAATACCGCACA
GCTGCAATCATGGGAGACCAATTACCTTATTCAGGTACAGTATAAGGCTG
GAAGGAGGAAACGAAGACGACATGCCGCTCATCCTTTCTTATCCTTTTGA
TTCCTCCTCACGTATAGGCCGTCGTACTCCAAGGCAGGCCAGGGAAGGAC
TTCAGTGCAGGCTGGGTGCGCGAGGAAGGGATTGGGCCGAGCGATTTGAC
CGCAAATTTCCGTCGGCATTGTCAGCTGTCTTATTTGCTGGCCACGCTCA
GGAAGCCCACCATTGCCTGGTACACGGGCGATGTGGTTGGAGGGGGTATG
GGGCTGGGCCTGGCCCGCTACCGCGTCTCGACCGAGAAGTCCACCTTTCA
GGTGGTAGGTCCCAAGGACGGCTGGATTTTGGACGGTGGACTGTCCTACC
TGTTGCCCCGCCTGCGCGTCGGCCCAGCAGGCAGCCCGGCGTTCGCCCGA
TACTTGAGCCTGACGGGCGCGTCGCTGTCGGGCTTGGACATGCTGGCCAC
GGGACTGTCGACGCACCACATGGAGGACAGCATGGCGGGGCAGCTGCATA
ATCGCCTAGCGGACTTGACATTCGAGCCGGACTTCATGGTGGAGGACGTG
ATGAGCGAGCACGCTGCTATGTTCTACAAGCTGGACACCCACCTCAATCC
CCCGCCCTATCATGAACTCTGGGCCAAATGGGCCAAGAACGACGAAAACC
GTAAAAAGTACGGCAGATTAGAAGGGTAACGGGAAGTGGACAAATATAAG
GCACAGCACAAGAGCAGCATCTTCATACTTTTGCTCGCGATTTTACGTTT
CTCCATTCATTATTCCCTACCCGCACGTGTTCTAGGTTGATGAAGCGTGC
CTCAGGCGTCATGACGGGCTTCGAGGACGACGATAGGTGGAATGACCATA
ACGACGATAATGCATGGGGAGCTTCAAGGCAGGAAGTGGATGCAACGGTA
TTCGATGCCAAGGAGGAAGCGGCCATGGAGGCTTTTGTGGAGGAGGAGGT
ACGGTGGAAATTGGAACTTGGGAATATGTGTTGTCATCGGTGGAGGAGGA
GAGTTATGTGGAAAGGGGGGCTCGACCTGTTTATTTACTCATTCTTGGCC
TACACCGCACATCCGCAATTGTGCAGGTGGAGGAAGATCCGGATATCCGC
GTAACGCTGGGCAAGATGGAGCCCCTTTCCAATGTTTTCTTGGCGCGGAA
TCAGGCCTTAGCGGCGGAAGAGGAAGACTTTGTGGGTGGTGGCCCAAGGC
AAACGAAGAGTGGGCAGGTGCGTACAACCGGAGAATGATGATGAGCTGCA
TGCGTTTTCCATCTTTTCTCGTATATTTATCGCTCCGTTGTCCCACCAGC
AGCCGGCGCTGCCGTCTGATACGGCGGGCTCCTTGTGGTGGCACCGAAAT
TTTGCTGAGGGCGATGACGCTATCTTCAATGCGCAATGGGAAGTTATCGA
GTACGTCCTCTTTTGGGTGGTTCAATGTGCTTGTGGGAGGCTTCTGGTTC
CAATCACGCGCTGATCATTTCTTATTGCCGTTAACAGGGCCCGCATAAAG
GAACGGGTCCAAGAGGAGGGTATGGAGGGCCTGGGCAACATCAATGAGAA
GTTCATGGACAACTTTCCTGAGTACATTACCTACCCGGAAAGGAAGCGTC
TGGTAGACGCCGATAAGGTAAGGTTTGGTGCTATCATCAGTGCCTATCTC
CTTAGGAAAACCTTGCTATGTGCATTTCAATTTATTCTGCCCTTACAACT
TACCATAATCAATCTCATGTACACAATCATTCTAGGTACTCCTCTCTCCC
TGGGACTGTAGCGTGGACCGGGCGGAGCGTTTCCCCGATTTCATGGAGCT
GGCTGAGAAGGTGGAAGTATGTTTCAAGGGCGAATCGGTGGAGGAGGTGG
TAGAGGGCTTGCGGAAAGACAACTCGGCCTGGGCGCAGGAGTGCTTGCGG
AGGATGGACAGTATGTCGTCTTTGAGGTAAGTTTAAATCCTTTTTTCCTT
GAGTCTTACTTCGATGATTTTTGATCTATCACTGATCCCATGCCGTCCAT
CTTATTGATCAAACAGTCTCAAGATTGTCTTCCGCCAGCTGGATGAGGCG
AAGGAGGCCGAGATTGAGGATGTCTTTCGTATGGATTACCGTGTGGGACA
GCGCTTGCTCGTTTCTCATGCACGGGCGAATGCAGATGGCTTGGCAGGCA
TGCAGAATGTGTCCGCTGACCAAGTGTCGAGTTTTTTCCAGCCGTTTGCA
ATGGGTGAGGAGGAGCTGGATTTGCCAGAGAGAGAGCAGGTGGGCGAAGA
GCAGCCGCAGCGACGATACATTGACATGAAGCTGCAACGGAGATTTGCGA
AGAGCAGCACCACAAGGGGGAGTATCTAAGACCGAAGCACAAGGGTTTGC
TGATCGACAGCAAAGTGCAACATATAGGAAAACGATTGCATAAAATG back to topCoding sequence (CDS) from alignment at chr5:608003..610899- >NO05G02290.2 ID=NO05G02290.2|Name=NO05G02290.2|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr5:608003..610899- (Nannochloropsis oceanica) ATGATGCGCTCGCGGCTGGCCAAGCTGGCCGCTGAAGCCAAGAAAATCAA GGTCGCACCAGCAACGGCCCGGGTAGGGGCGGGCAAGAATGTCAAGCTGG ACACTCAATACCGCATCTTGGAGTCCCCGGGATGTCGACGCGTGGTGCTG GCTGGGCCCGAAGGTCGCGTGGACGCCCGTACGGCCGAGTCGTTGCTTTG GAAGCTGCAATCATGGGAGACCAATTACCTTATTCAGGCCGTCGTACTCC AAGGCAGGCCAGGGAAGGACTTCAGTGCAGGCTGGGTGCGCGAGGAAGGG ATTGGGCCGAGCGATTTGACCGCAAATTTCCGTCGGCATTGTCAGCTGTC TTATTTGCTGGCCACGCTCAGGAAGCCCACCATTGCCTGGTACACGGGCG ATGTGGTTGGAGGGGGTATGGGGCTGGGCCTGGCCCGCTACCGCGTCTCG ACCGAGAAGTCCACCTTTCAGGTGGTAGGTCCCAAGGACGGCTGGATTTT GGACGGTGGACTGTCCTACCTGTTGCCCCGCCTGCGCGTCGGCCCAGCAG GCAGCCCGGCGTTCGCCCGATACTTGAGCCTGACGGGCGCGTCGCTGTCG GGCTTGGACATGCTGGCCACGGGACTGTCGACGCACCACATGGAGGACAG CATGGCGGGGCAGCTGCATAATCGCCTAGCGGACTTGACATTCGAGCCGG ACTTCATGGTGGAGGACGTGATGAGCGAGCACGCTGCTATGTTCTACAAG CTGGACACCCACCTCAATCCCCCGCCCTATCATGAACTCTGGGCCAAATG GGCCAAGAACGACGAAAACCGTAAAAAGTTGATGAAGCGTGCCTCAGGCG TCATGACGGGCTTCGAGGACGACGATAGGTGGAATGACCATAACGACGAT AATGCATGGGGAGCTTCAAGGCAGGAAGTGGATGCAACGGTATTCGATGC CAAGGAGGAAGCGGCCATGGAGGCTTTTGTGGAGGAGGAGGTGGAGGAAG ATCCGGATATCCGCGTAACGCTGGGCAAGATGGAGCCCCTTTCCAATGTT TTCTTGGCGCGGAATCAGGCCTTAGCGGCGGAAGAGGAAGACTTTGTGGG TGGTGGCCCAAGGCAAACGAAGAGTGGGCAGCCGGCGCTGCCGTCTGATA CGGCGGGCTCCTTGTGGTGGCACCGAAATTTTGCTGAGGGCGATGACGCT ATCTTCAATGCGCAATGGGAAGTTATCGAGGCCCGCATAAAGGAACGGGT CCAAGAGGAGGGTATGGAGGGCCTGGGCAACATCAATGAGAAGTTCATGG ACAACTTTCCTGAGTACATTACCTACCCGGAAAGGAAGCGTCTGGTAGAC GCCGATAAGGTACTCCTCTCTCCCTGGGACTGTAGCGTGGACCGGGCGGA GCGTTTCCCCGATTTCATGGAGCTGGCTGAGAAGGTGGAAGTATGTTTCA AGGGCGAATCGGTGGAGGAGGTGGTAGAGGGCTTGCGGAAAGACAACTCG GCCTGGGCGCAGGAGTGCTTGCGGAGGATGGACAGTATGTCGTCTTTGAG GTAA back to top
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