NO05G02180.1, NO05G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02180.1
Unique NameNO05G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2074
Alignment locationchr5:581105..583453 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:581105..583453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02180.1 vs.
Match: EWM28206.1 (cys met metabolism pyridoxal-phosphate-dependent enzyme [Nannochloropsis gaditana])

HSP 1 Score: 779.2 bits (2011), Expect = 8.200e-222
Identity = 391/502 (77.89%), Postives = 429/502 (85.46%), Query Frame = 0 
Query:   20 LMLVCVLIHPIVMAFVPTTLSHHVLLSSSCIPSAGTIHAMGPAPTTRSQSRSQSRWDFLPLQHTATTSADEDIMAEKIVGEAQARLRPAFEDVDRRTQRILKRVLTAFREHQVGTHMFNGIDGYGHGDVGRDTLEKVYASLFGAEAALVRVQIFSGTHAISCALFGVLRPGDKMLGLSGPPYDTLEEVIGTRVGHQDEGSGPAPGQRPLTGSLKEWGVAYDQVDLLSSVAPGQYFDLAEIDRRITADPCIRVLHIQRSCGYQWRPSIPVAEIGHVIAHIRAAFPSRELVVFVDNCYGEFVEDLEPTHVGADIVAGSLIKNPGGTLAPTGGYVIGKQHYVQAAFKRLSAPGVEGGATLGKTRWILQGLFMAPAVVGESLKGAMLLAEVMGTRFGLPCNPAPGTSRTDIIQAVQVGSRYQVIQFCQQVQRLSPIGAYIRPTAGISPGYGDEVVFAVGTFVDGSTLELSADGPLREPYTVFSQGCTHWTHWALVLEAALVQMGFC 522
            L+L C +     +A++P  L      SSS    +  +H MG     R + R      F+  Q ++T   D D  A++IV EA+ARLRPAF+DVD RTQRILKRVL +FR+ QVGTHMFNGIDGYGHGDVGRD+LE++YA LFGAEAALVRVQIFSGTHAISCALFGVLRPGDKMLGLSG PYDTLEEVIGTR  H+DE     P QR LTGSL+EWGVAYDQVDLL SVAPGQYF+L+EIDR+I AD  IRVLHIQRSCGYQWRPSIPVAEIG+VIAHIRA FP REL+VFVDNCYGEFVEDLEPTHVGADI+AGSLIKNPGGTLAPTGGY+IGK+HYV AAFKRLSAPGVEGGATLG+ RW+LQGLFMAP+VVGESLKGAMLLAEVMG+ FGLPCNPAPGT RTDIIQAVQVGSR +V+QFC QVQRLSPIGAYIRPTAG+SPGYGDEVVFAVGTFVDGSTLELSADGPLREP+TVFSQGC HWTHWALVLE ALVQMGFC
Sbjct:   13 LLLACFIT---CVAYMPVPLFRRSFFSSSYGFPSPALHGMG----LRVKERGAHALQFIMRQGSSTV-LDNDASAKEIVEEARARLRPAFDDVDSRTQRILKRVLKSFRKQQVGTHMFNGIDGYGHGDVGRDSLEEIYAQLFGAEAALVRVQIFSGTHAISCALFGVLRPGDKMLGLSGQPYDTLEEVIGTRETHKDEDDNSIPNQRFLTGSLEEWGVAYDQVDLLPSVAPGQYFNLSEIDRQIDADVNIRVLHIQRSCGYQWRPSIPVAEIGNVIAHIRAVFPDRELIVFVDNCYGEFVEDLEPTHVGADIIAGSLIKNPGGTLAPTGGYIIGKKHYVDAAFKRLSAPGVEGGATLGQNRWLLQGLFMAPSVVGESLKGAMLLAEVMGSGFGLPCNPAPGTYRTDIIQAVQVGSRDRVLQFCHQVQRLSPIGAYIRPTAGVSPGYGDEVVFAVGTFVDGSTLELSADGPLREPFTVFSQGCIHWTHWALVLEEALVQMGFC 506
The following BLAST results are available for this feature:
BLAST of NO05G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28206.18.200e-22277.89cys met metabolism pyridoxal-phosphate-dependent e... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02180NO05G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02180.1NO05G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02180.1.cds1NO05G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02180.1.cds2NO05G02180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02180.1 ID=NO05G02180.1|Name=NO05G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp
GCCCGTCACTTCAAACATATGCTGCCCGTGGTGAGGATTGGAGAGATATG
TGTGTAAGTGGTGGTCAATTTGCGTGGGCAGCAGGTCAGGTCAACCTCCT
CGCCGCCGTCGAACAAGCGAAGCAGCCCTTCCACTTCCCAGCATGACAAG
CAAGGCATTATACTTGCACGCTTCATAAGTAACCCTGCGCTTCGCTTATC
ATGAGCATCGTCCGTTTATTCACTCATTTCATACACGTGGGTGGCCTCCC
ATACGAATCCTTGCAAATACACCACTCACAGGATCGTGGCGCTGGGCCAG
CAACTTGACTCCATGGCCATGTTGCTCCTGCAGCCATTACAACGGGAATG
CTTCTGTTTGGGGGCCGCACTAATGCTGGTTTGTGTCTTGATCCATCCTA
TTGTGATGGCGTTTGTGCCTACTACCTTGTCGCATCATGTCCTGCTTTCT
TCCTCTTGCATCCCCTCGGCCGGCACCATCCACGCCATGGGCCCAGCCCC
TACAACGAGGAGCCAATCGCGAAGTCAATCGCGTTGGGACTTTTTGCCGC
TACAGCATACCGCCACCACTAGTGCTGATGAAGACATAATGGCCGAGAAG
ATTGTGGGCGAGGCGCAAGCACGGTTGCGACCTGCTTTTGAGGACGTGGA
CCGCCGGACACAGCGCATCCTGAAGCGGGTGCTTACAGCCTTCCGGGAGC
ACCAGGTGGGGACGCACATGTTTAACGGCATCGACGGGTACGGACATGGC
GACGTAGGTCGTGACACGTTGGAAAAGGTTTACGCGTCTCTCTTTGGTGC
CGAGGCTGCGCTTGTCCGCGTACAGATTTTTAGCGGAACCCACGCCATTT
CTTGCGCCCTCTTTGGCGTCCTCCGGCCGGGGGACAAAATGTTGGGTTTG
AGCGGCCCTCCATACGATACACTTGAAGAGGTAATTGGAACTCGAGTAGG
ACACCAGGATGAAGGTAGTGGCCCAGCCCCGGGGCAGCGGCCGCTGACAG
GGAGCTTAAAGGAATGGGGTGTGGCATATGATCAGGTGGATCTCCTCTCT
TCCGTGGCACCAGGACAGTATTTTGACCTCGCCGAGATCGACCGCCGCAT
TACTGCAGATCCATGTATTCGGGTTTTGCACATTCAGCGCTCTTGCGGTT
ACCAGTGGCGACCTTCCATTCCCGTGGCCGAGATTGGCCATGTTATTGCC
CATATCCGCGCGGCCTTTCCAAGCCGGGAGTTGGTTGTATTCGTCGACAA
CTGCTACGGGGAGTTTGTGGAGGACTTGGAGCCTACACATGTGGGTGCAG
ATATCGTAGCGGGCTCATTGATAAAGAATCCGGGTGGCACGCTCGCTCCG
ACGGGTGGGTATGTAATTGGCAAGCAACATTACGTACAGGCAGCCTTCAA
GCGATTGAGCGCACCTGGCGTGGAGGGCGGAGCCACTTTGGGTAAGACGC
GTTGGATTCTACAGGGCCTCTTTATGGCCCCGGCTGTGGTGGGTGAGTCG
CTCAAGGGCGCGATGCTATTGGCCGAGGTCATGGGCACTCGGTTCGGACT
GCCTTGTAATCCAGCCCCAGGCACATCACGAACCGATATTATTCAGGCCG
TACAGGTAGGCAGTCGATACCAGGTTATCCAATTTTGCCAGCAGGTGCAG
CGGTTGAGCCCCATCGGTGCTTACATTCGGCCGACTGCGGGCATTTCGCC
GGGTTACGGCGACGAAGTTGTCTTTGCCGTAGGCACATTTGTCGACGGCA
GCACCCTAGAATTGAGCGCTGATGGACCGCTGCGGGAGCCGTATACTGTC
TTTTCGCAGGGTTGCACGCATTGGACACATTGGGCCCTCGTTCTAGAGGC
AGCTTTGGTACAGATGGGCTTTTGCCATGATGAATACAGTCCAGGAGGCA
TGGGTTGTGCAAAGGACTTCAGTGAAAACGTAAATAAAAGCACTCTACTC
GCAGAAGGAGGAATGAGTAAGGGATAAGAGAAGAAAATTACCATGGGACA
ATTTGACGGGCTTTAAGCCGACCCTTGGGGAACAGGATTGCCAGAAAATG
AAGTAATCAGCGTACGAATGCATG
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protein sequence of NO05G02180.1

>NO05G02180.1-protein ID=NO05G02180.1-protein|Name=NO05G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MAMLLLQPLQRECFCLGAALMLVCVLIHPIVMAFVPTTLSHHVLLSSSCI
PSAGTIHAMGPAPTTRSQSRSQSRWDFLPLQHTATTSADEDIMAEKIVGE
AQARLRPAFEDVDRRTQRILKRVLTAFREHQVGTHMFNGIDGYGHGDVGR
DTLEKVYASLFGAEAALVRVQIFSGTHAISCALFGVLRPGDKMLGLSGPP
YDTLEEVIGTRVGHQDEGSGPAPGQRPLTGSLKEWGVAYDQVDLLSSVAP
GQYFDLAEIDRRITADPCIRVLHIQRSCGYQWRPSIPVAEIGHVIAHIRA
AFPSRELVVFVDNCYGEFVEDLEPTHVGADIVAGSLIKNPGGTLAPTGGY
VIGKQHYVQAAFKRLSAPGVEGGATLGKTRWILQGLFMAPAVVGESLKGA
MLLAEVMGTRFGLPCNPAPGTSRTDIIQAVQVGSRYQVIQFCQQVQRLSP
IGAYIRPTAGISPGYGDEVVFAVGTFVDGSTLELSADGPLREPYTVFSQG
CTHWTHWALVLEAALVQMGFCHDEYSPGGMGCAKDFSENVNKSTLLAEGG
MSKG*
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mRNA from alignment at chr5:581105..583453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02180.1 ID=NO05G02180.1|Name=NO05G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp|location=Sequence derived from alignment at chr5:581105..583453+ (Nannochloropsis oceanica)
GCCCGTCACTTCAAACATATGCTGCCCGTGGTGAGGATTGGAGAGATATG
TGTGTAAGTGGTGGTCAATTTGCGTGGGCAGCAGGTCAGGTCAACCTCCT
CGCCGCCGTCGAACAAGCGAAGCAGCCCTTCCACTTCCCAGCATGACAAG
CAAGGCATTATACTTGCACGCTTCATAAGTAACCCTGCGCTTCGCTTATC
ATGAGCATCGTCCGTTTATTCACTCATTTCATACACGTGGGTGGCCTCCC
ATACGAATCCTTGCAAATACACCACTCACAGGATCGTGGCGCTGGGCCAG
CAACTTGACTCCATGGCCATGTTGCTCCTGCAGCCATTACAACGGGAATG
CTTCTGTTTGGGGGCCGCACTAATGCTGGTTTGTGTCTTGATCCATCCTA
TTGTGATGGCGTTTGTGCCTACTACCTTGTCGCATCATGTCCTGCTTTCT
TCCTCTTGCATCCCCTCGGCCGGCACCATCCACGCCATGGGCCCAGCCCC
TACAACGAGGAGCCAATCGCGAAGTCAATCGCGTTGGGACTTTTTGCCGC
TACAGCATACCGCCACCACTAGTGCTGATGAAGACATAATGGCCGAGAAG
ATTGTGGGCGAGGCGCAAGCACGGTTGCGACCTGCTTTTGAGGACGTGGA
CCGCCGGACACAGCGCATCCTGAAGCGGGTGCTTACAGCCTTCCGGGAGC
ACCAGGTGGGGACGCACATGTTTAACGGCATCGACGGGTACGGACATGGC
GACGTAGGTCGTGACACGTTGGAAAAGGTTTACGCGTCTCTCTTTGGTGC
CGAGGCTGCGCTTGTCCGCGTACAGATTTTTAGCGGAACCCACGCCATTT
CTTGCGCCCTCTTTGGCGTCCTCCGGCCGGGGGACAAAATGTTGGGTTTG
AGCGGCCCTCCATACGATACACTTGAAGAGGTAATTGGAACTCGAGTAGG
ACACCAGGATGAAGGTAGTGGCCCAGCCCCGGGGCAGCGGCCGCTGACAG
GGAGCTTAAAGGAATGGGGTGTGGCATATGATCAGGTGGATCTCCTCTCT
TCCGTGGCACCAGGACAGTATTTTGACCTCGCCGAGATCGACCGCCGCAT
TACTGCAGATCCATGTATTCGGGTTTTGCACATTCAGCGCTCTTGCGGTT
ACCAGTGGCGACCTTCCATTCCCGTGGCCGAGATTGGCCATGTTATTGCC
CATATCCGCGCGGCCTTTCCAAGCCGGGAGTTGGTTGTATTCGTCGACAA
CTGCTACGGGGAGTTTGTGGAGGACTTGGAGCCTACACATGTGGGTGCAG
ATATCGTAGCGGGCTCATTGATAAAGGTAAGGGAAAGCATCATCTGGAAA
AGGATAGTCGGGTCGGGCGCCCCAGGGGGTGGGAGGGGTACTGAGTGGTC
TGGGCCAATTTAAGCAGAGGCGTAGTTCGGGGACTAGGGTCCTTTTATGC
GATTAAAGCAAAAAAAAGGCTTAACAGGGTACAGCATCGTGTTAATTTCA
AGCAATTGAACGCCTACGAGGGACAATCGCAAAAAGCAGCTGAACGCTTT
CGTGATTGACCATTCTCAATCATACCCGCACCTGCGCTCACATCGTTACA
GAATCCGGGTGGCACGCTCGCTCCGACGGGTGGGTATGTAATTGGCAAGC
AACATTACGTACAGGCAGCCTTCAAGCGATTGAGCGCACCTGGCGTGGAG
GGCGGAGCCACTTTGGGTAAGACGCGTTGGATTCTACAGGGCCTCTTTAT
GGCCCCGGCTGTGGTGGGTGAGTCGCTCAAGGGCGCGATGCTATTGGCCG
AGGTCATGGGCACTCGGTTCGGACTGCCTTGTAATCCAGCCCCAGGCACA
TCACGAACCGATATTATTCAGGCCGTACAGGTAGGCAGTCGATACCAGGT
TATCCAATTTTGCCAGCAGGTGCAGCGGTTGAGCCCCATCGGTGCTTACA
TTCGGCCGACTGCGGGCATTTCGCCGGGTTACGGCGACGAAGTTGTCTTT
GCCGTAGGCACATTTGTCGACGGCAGCACCCTAGAATTGAGCGCTGATGG
ACCGCTGCGGGAGCCGTATACTGTCTTTTCGCAGGGTTGCACGCATTGGA
CACATTGGGCCCTCGTTCTAGAGGCAGCTTTGGTACAGATGGGCTTTTGC
CATGATGAATACAGTCCAGGAGGCATGGGTTGTGCAAAGGACTTCAGTGA
AAACGTAAATAAAAGCACTCTACTCGCAGAAGGAGGAATGAGTAAGGGAT
AAGAGAAGAAAATTACCATGGGACAATTTGACGGGCTTTAAGCCGACCCT
TGGGGAACAGGATTGCCAGAAAATGAAGTAATCAGCGTACGAATGCATG
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Coding sequence (CDS) from alignment at chr5:581105..583453+

>NO05G02180.1 ID=NO05G02180.1|Name=NO05G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr5:581105..583453+ (Nannochloropsis oceanica)
ATGGCCATGTTGCTCCTGCAGCCATTACAACGGGAATGCTTCTGTTTGGG
GGCCGCACTAATGCTGGTTTGTGTCTTGATCCATCCTATTGTGATGGCGT
TTGTGCCTACTACCTTGTCGCATCATGTCCTGCTTTCTTCCTCTTGCATC
CCCTCGGCCGGCACCATCCACGCCATGGGCCCAGCCCCTACAACGAGGAG
CCAATCGCGAAGTCAATCGCGTTGGGACTTTTTGCCGCTACAGCATACCG
CCACCACTAGTGCTGATGAAGACATAATGGCCGAGAAGATTGTGGGCGAG
GCGCAAGCACGGTTGCGACCTGCTTTTGAGGACGTGGACCGCCGGACACA
GCGCATCCTGAAGCGGGTGCTTACAGCCTTCCGGGAGCACCAGGTGGGGA
CGCACATGTTTAACGGCATCGACGGGTACGGACATGGCGACGTAGGTCGT
GACACGTTGGAAAAGGTTTACGCGTCTCTCTTTGGTGCCGAGGCTGCGCT
TGTCCGCGTACAGATTTTTAGCGGAACCCACGCCATTTCTTGCGCCCTCT
TTGGCGTCCTCCGGCCGGGGGACAAAATGTTGGGTTTGAGCGGCCCTCCA
TACGATACACTTGAAGAGGTAATTGGAACTCGAGTAGGACACCAGGATGA
AGGTAGTGGCCCAGCCCCGGGGCAGCGGCCGCTGACAGGGAGCTTAAAGG
AATGGGGTGTGGCATATGATCAGGTGGATCTCCTCTCTTCCGTGGCACCA
GGACAGTATTTTGACCTCGCCGAGATCGACCGCCGCATTACTGCAGATCC
ATGTATTCGGGTTTTGCACATTCAGCGCTCTTGCGGTTACCAGTGGCGAC
CTTCCATTCCCGTGGCCGAGATTGGCCATGTTATTGCCCATATCCGCGCG
GCCTTTCCAAGCCGGGAGTTGGTTGTATTCGTCGACAACTGCTACGGGGA
GTTTGTGGAGGACTTGGAGCCTACACATGTGGGTGCAGATATCGTAGCGG
GCTCATTGATAAAGAATCCGGGTGGCACGCTCGCTCCGACGGGTGGGTAT
GTAATTGGCAAGCAACATTACGTACAGGCAGCCTTCAAGCGATTGAGCGC
ACCTGGCGTGGAGGGCGGAGCCACTTTGGGTAAGACGCGTTGGATTCTAC
AGGGCCTCTTTATGGCCCCGGCTGTGGTGGGTGAGTCGCTCAAGGGCGCG
ATGCTATTGGCCGAGGTCATGGGCACTCGGTTCGGACTGCCTTGTAATCC
AGCCCCAGGCACATCACGAACCGATATTATTCAGGCCGTACAGGTAGGCA
GTCGATACCAGGTTATCCAATTTTGCCAGCAGGTGCAGCGGTTGAGCCCC
ATCGGTGCTTACATTCGGCCGACTGCGGGCATTTCGCCGGGTTACGGCGA
CGAAGTTGTCTTTGCCGTAGGCACATTTGTCGACGGCAGCACCCTAGAAT
TGAGCGCTGATGGACCGCTGCGGGAGCCGTATACTGTCTTTTCGCAGGGT
TGCACGCATTGGACACATTGGGCCCTCGTTCTAGAGGCAGCTTTGGTACA
GATGGGCTTTTGCCATGATGAATACAGTCCAGGAGGCATGGGTTGTGCAA
AGGACTTCAGTGAAAACGTAAATAAAAGCACTCTACTCGCAGAAGGAGGA
ATGAGTAAGGGATAA
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Synonyms
Publications