NO05G02160.1, NO05G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02160.1
Unique NameNO05G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr5:579140..579970 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:579140..579970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02160.1 vs.
Match: EWM28255.1 (hypothetical protein Naga_100004g138 [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 1.600e-117
Identity = 203/274 (74.09%), Postives = 234/274 (85.40%), Query Frame = 0 
Query:    1 MKQFPAVRLLASLLESLNPELPFDASDPKGDEYLSRWHSSPTQHAAELIVSFLLFSPLLYVAWRNMQKQMRALRITYTPTKGQVLWSFGLIMTLLLQVPLKLDVTNISSHPAYFLQPCHVTTILYFICTVVPSETSFICFHALSLLTWGPSLAFCFPNLPATRLEVTFFYLQHIFLCTAPIFAVNKTHRLLYKSWSWNYFSFVVLSAYHWWLLLPWAIKSGINVATMTSPPPALIPFGRCYRFVQGLACLVLHSLSIGVHLALSALMQRMAKRK 275
            M  FP VRLLA+LLESLN EL FD+ DP+GDEYLSRWHSSP QHA E+++S LLF PLL  AW+NM+KQ+RALRITYTPTK QVLWS+ L+MT +LQVPLKLDV  + SHPAYFLQPCHVTT+LYF+CTVVP  +SFICFHALSLLTWGPSLAFCFPN PAT LEV FF+LQH+ L +APIFA++K HR LY+SWSWNYFSF++LSAYHWWLLLPW I +GINVATMTSPPPAL PF R YR VQ  AC +LH+LS+GVH ALS LM+ ++K K
Sbjct:    1 MHTFPLVRLLANLLESLNSELSFDSRDPEGDEYLSRWHSSPFQHAVEIVISVLLFGPLLLSAWKNMEKQVRALRITYTPTKLQVLWSYALLMTFVLQVPLKLDVKKLPSHPAYFLQPCHVTTVLYFVCTVVPCYSSFICFHALSLLTWGPSLAFCFPNYPATPLEVLFFHLQHLLLVSAPIFAISKVHRPLYRSWSWNYFSFLLLSAYHWWLLLPWGIYTGINVATMTSPPPALAPFKRYYRLVQAGACFILHTLSVGVHFALSCLMESLSKWK 274
The following BLAST results are available for this feature:
BLAST of NO05G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28255.11.600e-11774.09hypothetical protein Naga_100004g138 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02160NO05G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02160.1NO05G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02160.1.cds1NO05G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02160.1 ID=NO05G02160.1|Name=NO05G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp
ATGAAGCAATTTCCCGCAGTGCGGTTGCTGGCCAGCCTCTTGGAAAGCCT
CAATCCCGAGCTCCCCTTCGATGCCAGTGATCCCAAGGGAGATGAATACT
TGAGCAGATGGCACTCATCACCAACCCAGCATGCCGCTGAACTCATTGTG
TCGTTTCTCCTCTTCAGTCCTTTGCTGTATGTGGCCTGGCGTAATATGCA
AAAACAAATGCGTGCTTTGCGGATAACCTATACCCCCACGAAAGGGCAGG
TGTTGTGGAGCTTTGGTCTTATCATGACGCTTCTTTTGCAGGTGCCTCTC
AAGCTAGATGTCACCAACATCTCCTCCCACCCTGCTTACTTTTTGCAGCC
CTGCCACGTCACCACCATCCTTTATTTTATTTGCACCGTTGTCCCGTCGG
AAACCTCCTTTATCTGCTTTCATGCACTAAGTCTTCTGACCTGGGGGCCG
TCGCTTGCGTTCTGCTTTCCGAATCTGCCTGCAACTCGTCTCGAGGTCAC
CTTCTTCTATCTACAACACATTTTCCTCTGTACTGCGCCAATTTTTGCGG
TAAACAAAACCCACCGACTCCTGTACAAGAGCTGGTCGTGGAACTACTTT
TCGTTCGTGGTCCTGTCCGCATATCACTGGTGGCTGTTGCTTCCGTGGGC
AATCAAAAGCGGTATAAACGTTGCGACCATGACCTCCCCTCCTCCCGCCC
TCATACCCTTTGGGCGCTGCTACCGTTTTGTACAGGGGTTGGCATGTCTT
GTGCTTCATAGCCTGAGTATCGGTGTCCATCTAGCGTTGAGTGCCTTGAT
GCAACGTATGGCCAAGAGGAAGGGTGCGTAA
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protein sequence of NO05G02160.1

>NO05G02160.1-protein ID=NO05G02160.1-protein|Name=NO05G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKQFPAVRLLASLLESLNPELPFDASDPKGDEYLSRWHSSPTQHAAELIV
SFLLFSPLLYVAWRNMQKQMRALRITYTPTKGQVLWSFGLIMTLLLQVPL
KLDVTNISSHPAYFLQPCHVTTILYFICTVVPSETSFICFHALSLLTWGP
SLAFCFPNLPATRLEVTFFYLQHIFLCTAPIFAVNKTHRLLYKSWSWNYF
SFVVLSAYHWWLLLPWAIKSGINVATMTSPPPALIPFGRCYRFVQGLACL
VLHSLSIGVHLALSALMQRMAKRKGA*
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mRNA from alignment at chr5:579140..579970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02160.1 ID=NO05G02160.1|Name=NO05G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp|location=Sequence derived from alignment at chr5:579140..579970+ (Nannochloropsis oceanica)
ATGAAGCAATTTCCCGCAGTGCGGTTGCTGGCCAGCCTCTTGGAAAGCCT
CAATCCCGAGCTCCCCTTCGATGCCAGTGATCCCAAGGGAGATGAATACT
TGAGCAGATGGCACTCATCACCAACCCAGCATGCCGCTGAACTCATTGTG
TCGTTTCTCCTCTTCAGTCCTTTGCTGTATGTGGCCTGGCGTAATATGCA
AAAACAAATGCGTGCTTTGCGGATAACCTATACCCCCACGAAAGGGCAGG
TGTTGTGGAGCTTTGGTCTTATCATGACGCTTCTTTTGCAGGTGCCTCTC
AAGCTAGATGTCACCAACATCTCCTCCCACCCTGCTTACTTTTTGCAGCC
CTGCCACGTCACCACCATCCTTTATTTTATTTGCACCGTTGTCCCGTCGG
AAACCTCCTTTATCTGCTTTCATGCACTAAGTCTTCTGACCTGGGGGCCG
TCGCTTGCGTTCTGCTTTCCGAATCTGCCTGCAACTCGTCTCGAGGTCAC
CTTCTTCTATCTACAACACATTTTCCTCTGTACTGCGCCAATTTTTGCGG
TAAACAAAACCCACCGACTCCTGTACAAGAGCTGGTCGTGGAACTACTTT
TCGTTCGTGGTCCTGTCCGCATATCACTGGTGGCTGTTGCTTCCGTGGGC
AATCAAAAGCGGTATAAACGTTGCGACCATGACCTCCCCTCCTCCCGCCC
TCATACCCTTTGGGCGCTGCTACCGTTTTGTACAGGGGTTGGCATGTCTT
GTGCTTCATAGCCTGAGTATCGGTGTCCATCTAGCGTTGAGTGCCTTGAT
GCAACGTATGGCCAAGAGGAAGGGTGCGTAA
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Coding sequence (CDS) from alignment at chr5:579140..579970+

>NO05G02160.1 ID=NO05G02160.1|Name=NO05G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr5:579140..579970+ (Nannochloropsis oceanica)
ATGAAGCAATTTCCCGCAGTGCGGTTGCTGGCCAGCCTCTTGGAAAGCCT
CAATCCCGAGCTCCCCTTCGATGCCAGTGATCCCAAGGGAGATGAATACT
TGAGCAGATGGCACTCATCACCAACCCAGCATGCCGCTGAACTCATTGTG
TCGTTTCTCCTCTTCAGTCCTTTGCTGTATGTGGCCTGGCGTAATATGCA
AAAACAAATGCGTGCTTTGCGGATAACCTATACCCCCACGAAAGGGCAGG
TGTTGTGGAGCTTTGGTCTTATCATGACGCTTCTTTTGCAGGTGCCTCTC
AAGCTAGATGTCACCAACATCTCCTCCCACCCTGCTTACTTTTTGCAGCC
CTGCCACGTCACCACCATCCTTTATTTTATTTGCACCGTTGTCCCGTCGG
AAACCTCCTTTATCTGCTTTCATGCACTAAGTCTTCTGACCTGGGGGCCG
TCGCTTGCGTTCTGCTTTCCGAATCTGCCTGCAACTCGTCTCGAGGTCAC
CTTCTTCTATCTACAACACATTTTCCTCTGTACTGCGCCAATTTTTGCGG
TAAACAAAACCCACCGACTCCTGTACAAGAGCTGGTCGTGGAACTACTTT
TCGTTCGTGGTCCTGTCCGCATATCACTGGTGGCTGTTGCTTCCGTGGGC
AATCAAAAGCGGTATAAACGTTGCGACCATGACCTCCCCTCCTCCCGCCC
TCATACCCTTTGGGCGCTGCTACCGTTTTGTACAGGGGTTGGCATGTCTT
GTGCTTCATAGCCTGAGTATCGGTGTCCATCTAGCGTTGAGTGCCTTGAT
GCAACGTATGGCCAAGAGGAAGGGTGCGTAA
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Synonyms
Publications