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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:574353..577520 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02140.1 vs.
Match: EWM28300.1 (Bystin [Nannochloropsis gaditana]) HSP 1 Score: 640.6 bits (1651), Expect = 4.300e-180 Identity = 359/528 (67.99%), Postives = 415/528 (78.60%), Query Frame = 0
Query: 1 MGKGKKRR-VPLAVELDDDAKEERVLELKRKRMLRRRIEGQGDDEESAGNHAQMEEEGEAADGGASDKFLDPKLSRKILLQASKQMAEEER----SSHQRGGAAEAGKGVVRFASSGRCGKTQARRHGDSMDSDDDEDGEDAYRTLGWDVEEMDKYEHEEEEEDGMVEFKEGAVH-MGAGGLSEAEQRVVSSFMDIGAGERRTLADIIMNKIRERAEEDDLEVKGLPGQ--EGEDGGRSKISLKVREVYAEIGKLLKTYTAGKLPKAFKILPALANWEEVVYLTRPDEWTPHATFAATRIFASNLNAKLSQRFFNLILLEKCRDDICANKNLNYHYYTALKKAMYKPGAFFKGILLPLIQSGDCTIREATIIGSVLGKVSIPVNHAAVVLLKLATARDYSAPCSIFLKALLNKKYTLPYRVIDALADYFVRFAEYEGQGLTSATSATASSTGPILPVLWHQSLLVFAQRYKEEITKEDKERLREVLKAHSHHQITPEVRRELFNCRSRGELDPSNFRGNGQNALLRSM 521
MGKGKKR+ +PLA ELD+ +KE+R+LE KRKRM+RRR EGQGDD E +H +M + A G S FLDPKLS+KIL AS+Q AEEER + + E V A S R GKT ++ DS +SD+++ E L WD E +Y EE+ DG VE ++GAV+ + GGLSE E RVVSSFMD+GAGERRTLADII++KI +AE D GL GQ +G++ + IS KV+EVY+EIG+LLKTYTAGKLPKAFKILPAL+NWEEV+YLTRPDEWTPHAT+AATRIFASNLNAKLSQRFFNL+LLEKCRDDI +NKNLNYHYY ALKKAMYKPGAFFKGILLPLIQSGDCT+REATI+GSVLGKVSIPV+HAAVVLLKLATARDYSA CSIFLKALLNKKYTLPYRVID+L +YFV FAEYEG LT++T A P+LPVLWHQSLL+FAQRYKEEIT+EDKERLREV+KAH HHQITPE+RRELFNCR RGE D S +ALL+SM
Sbjct: 21 MGKGKKRQQLPLAEELDEASKEKRILESKRKRMIRRRAEGQGDDGEELLSHHKM--ASDRAAGEKSSTFLDPKLSQKILKVASRQAAEEERNFVLAQDDQVHTGEGSAHVHSVAQSSR-GKTSVQKQEDSSESDEEDMKEVGGNLLSWDEEGSMEY---EEDGDGTVEVRDGAVYSVDRGGLSEIEHRVVSSFMDVGAGERRTLADIILDKIHAKAE--DGAASGLQGQAADGDEPLVTTISPKVQEVYSEIGRLLKTYTAGKLPKAFKILPALSNWEEVMYLTRPDEWTPHATYAATRIFASNLNAKLSQRFFNLVLLEKCRDDILSNKNLNYHYYMALKKAMYKPGAFFKGILLPLIQSGDCTVREATIVGSVLGKVSIPVSHAAVVLLKLATARDYSASCSIFLKALLNKKYTLPYRVIDSLVEYFVSFAEYEGHSLTASTGAPIQGADPVLPVLWHQSLLLFAQRYKEEITREDKERLREVMKAHQHHQITPEIRRELFNCRCRGEKDES-------DALLKSM 533
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02140.1 ID=NO05G02140.1|Name=NO05G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2478bp
CCTCGTCCTCCTGCCCCTCTTTCCCCTCCTCCTCCCCCTCCTGCCCCTCT
TTCCCCTCCTCCTCCCCCTCTTCCCCCTCGTCGGAGCAGCCTCACTATCT
TTCTCTTTCCCTTCTCCATTCCTCCAGTAAGTGCCGCACCAATGGTTGCT
AGTGCTCGTGCTGCCTGTTCTCCGGGTAAAGAGAGTATAGTGGGGATTCC
GCTTTTTCCCTCTCCTCCTCCTCCTGTTGCCGCTCCGGCCGCCCCGACTC
CTCCCACTCCTACCCTTCCAGGATCCCCTCCTGTATCCATCCTGCTATCC
CCTCCCTACTCTTTCCTCTCCTCCATCCTTCCACCAGGTGAAGACAGCGG
AGGGGAGTGTGGGGTTCCCACTCAGCTTCGTTTTTCCATGCCGGGCCCGT
GGCAAGAGGCAGAGAATGACGGGCCCTGGTACTCATTCACCAGCGGGCCC
GTCCACTGGGTTGTGCTGTGTATTGAGAAGGTGAAATAGGCGGGAGCACG
TGAAGTAAAGAGCGGGGTTCACAAGGATGGAAGCAAACTCTGTTATTATA
ATCATATGTGTAAACAAACATATTGACTTATGCATACGCACACAGGAGTT
TATTCCTGGCTCACCGCAGCACGATTTCCTGGTTGACACCCTCTCCTCAC
AGGTGTGTCTTTTCTTCTCTGATTCCTCGTCTTTCAAGACTATGAAGCGC
CCCTCTTTTTCACGTTCCTCCCACCCTCTCACTTCTCTAGGTGAATCGCA
CGCACGCTGTTTCTCGCATCTCGCGCACAATCTCGCATTGCACGCATCAA
CAATTCATGGGCAAGGGAAAGAAGCGCCGGGTGCCTTTGGCAGTCGAGCT
CGACGACGACGCCAAGGAAGAACGGGTCCTGGAGCTGAAGCGAAAGCGCA
TGTTGCGGCGGCGTATTGAGGGTCAGGGGGATGACGAGGAAAGCGCAGGC
AACCATGCTCAGATGGAGGAAGAAGGAGAGGCCGCGGATGGGGGGGCGTC
TGACAAGTTTCTCGACCCCAAGCTTTCCCGTAAGATCTTGCTGCAGGCTT
CGAAGCAGATGGCTGAGGAAGAACGCAGTAGCCACCAGCGTGGTGGAGCT
GCAGAGGCTGGAAAGGGGGTTGTTCGCTTCGCGTCCAGCGGCAGATGTGG
TAAGACACAGGCCCGGCGGCATGGCGACTCGATGGACAGCGACGATGACG
AGGACGGAGAAGACGCCTATAGGACGCTGGGGTGGGATGTGGAGGAAATG
GACAAGTACGAGCATGAGGAAGAGGAGGAGGATGGAATGGTGGAATTCAA
GGAGGGAGCGGTGCATATGGGAGCGGGGGGTCTATCAGAGGCGGAGCAAC
GTGTTGTCTCGTCCTTCATGGACATTGGCGCAGGGGAGCGCCGAACTCTG
GCCGATATTATTATGAATAAAATCCGTGAAAGAGCTGAGGAGGATGATCT
AGAGGTCAAGGGGCTGCCAGGGCAGGAAGGGGAAGACGGGGGCCGTTCCA
AGATATCTCTTAAGGTTCGAGAGGTGTATGCGGAGATTGGAAAATTACTC
AAGACCTATACGGCGGGGAAGCTGCCCAAGGCTTTCAAAATCTTGCCTGC
TCTTGCAAACTGGGAGGAGGTAGTGTATTTGACACGCCCGGATGAATGGA
CTCCTCATGCTACCTTTGCGGCGACGCGCATTTTTGCCTCGAATCTGAAT
GCGAAGCTCTCGCAGCGATTTTTCAATTTGATTTTGCTTGAAAAGTGCCG
CGATGATATTTGCGCAAACAAGAACCTGAATTATCACTATTACACGGCGC
TAAAAAAAGCCATGTACAAGCCCGGAGCCTTCTTCAAGGGCATTCTTCTT
CCGCTTATCCAATCCGGGGACTGCACAATCCGCGAGGCCACCATCATCGG
AAGTGTGTTGGGAAAGGTCTCGATTCCTGTCAACCACGCCGCCGTCGTCC
TCCTCAAGCTGGCCACCGCCCGAGACTACTCCGCTCCCTGTTCCATTTTT
CTGAAGGCTCTCTTAAATAAGAAATACACCTTGCCATATCGCGTCATCGA
TGCTCTGGCTGATTACTTCGTTCGGTTCGCTGAGTATGAAGGGCAGGGTC
TGACGTCAGCTACCAGTGCCACGGCCAGCAGCACGGGGCCCATCCTTCCG
GTGCTCTGGCATCAGTCTTTACTTGTGTTCGCGCAGCGATATAAGGAAGA
AATCACGAAGGAAGACAAGGAGCGGTTGAGAGAGGTTTTGAAGGCGCATT
CGCATCACCAGATCACCCCGGAAGTGAGGAGGGAGTTGTTTAATTGTCGG
AGTCGGGGGGAACTAGATCCGAGCAATTTCAGGGGGAATGGGCAGAACGC
TTTGTTGAGGAGTATGAATTTTGTTTAAGGTGGTGTTGCCTTTTGGAGTG
AGATAGGAGGACCACAGGGATGATTTCTCCCTGTTCTGAGAAAAGAGTGA
AGAACAAGTACGAGAGGATGTGTGGAGG back to topprotein sequence of NO05G02140.1 >NO05G02140.1-protein ID=NO05G02140.1-protein|Name=NO05G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MGKGKKRRVPLAVELDDDAKEERVLELKRKRMLRRRIEGQGDDEESAGNH
AQMEEEGEAADGGASDKFLDPKLSRKILLQASKQMAEEERSSHQRGGAAE
AGKGVVRFASSGRCGKTQARRHGDSMDSDDDEDGEDAYRTLGWDVEEMDK
YEHEEEEEDGMVEFKEGAVHMGAGGLSEAEQRVVSSFMDIGAGERRTLAD
IIMNKIRERAEEDDLEVKGLPGQEGEDGGRSKISLKVREVYAEIGKLLKT
YTAGKLPKAFKILPALANWEEVVYLTRPDEWTPHATFAATRIFASNLNAK
LSQRFFNLILLEKCRDDICANKNLNYHYYTALKKAMYKPGAFFKGILLPL
IQSGDCTIREATIIGSVLGKVSIPVNHAAVVLLKLATARDYSAPCSIFLK
ALLNKKYTLPYRVIDALADYFVRFAEYEGQGLTSATSATASSTGPILPVL
WHQSLLVFAQRYKEEITKEDKERLREVLKAHSHHQITPEVRRELFNCRSR
GELDPSNFRGNGQNALLRSMNFV* back to topmRNA from alignment at chr5:574353..577520- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02140.1 ID=NO05G02140.1|Name=NO05G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3168bp|location=Sequence derived from alignment at chr5:574353..577520- (Nannochloropsis oceanica)
CCTCGTCCTCCTGCCCCTCTTTCCCCTCCTCCTCCCCCTCCTGCCCCTCT
TTCCCCTCCTCCTCCCCCTCTTCCCCCTCGTCGGAGCAGCCTCACTATCT
TTCTCTTTCCCTTCTCCATTCCTCCAGTAAGTGCCGCACCAATGGTTGCT
AGTGCTCGTGCTGCCTGTTCTCCGGGTAAAGAGAGTATAGTGGGGATTCC
GCTTTTTCCCTCTCCTCCTCCTCCTGTTGCCGCTCCGGCCGCCCCGACTC
CTCCCACTCCTACCCTTCCAGGATCCCCTCCTGTATCCATCCTGCTATCC
CCTCCCTACTCTTTCCTCTCCTCCATCCTTCCACCAGGTGAAGACAGCGG
AGGGGAGTGTGGGGTTCCCACTCAGCTTCGTTTTTCCATGCCGGGCCCGT
GGCAAGAGGCAGAGAATGACGGGCCCTGGTACTCATTCACCAGCGGGCCC
GTCCACTGGGTTGTGCTGTGTATTGAGAAGGTGAAATAGGCGGGAGCACG
TGAAGTAAAGAGCGGGGTTCACAAGGATGGAAGCAAACTCTGTTATTATA
ATCATATGTGTAAACAAACATATTGACTTATGCATACGCACACAGGAGTT
TATTCCTGGCTCACCGCAGCACGATTTCCTGGTTGACACCCTCTCCTCAC
AGGTGTGTCTTTTCTTCTCTGATTCCTCGTCTTTCAAGACTATGAAGCGC
CCCTCTTTTTCACGTTCCTCCCACCCTCTCACTTCTCTAGGTGAATCGCA
CGCACGCTGTTTCTCGCATCTCGCGCACAATCTCGGTAGGGTTGGAGAAC
TTCTTGAAGGGTTGGATGGGATGGTTGTGGGGGTTCTGGGTATTTGTTGG
TGGCCAATGTAGACATTTTCGCGCTCTCTTGGCCTCTCGTGCAACTATTG
CCAGGCCTGGGTGTTGTCACATCGGGTTTTAATGCGCTCGGATAGGTTGG
TCTTCAGTGGCAGTAGGAGCAAGTCGTTGTGTGAGTGTGGGCCAGCAGCC
GTTGGCCGATGCAAGTTGTTGCTTGTTGCTGGCTTGTTTGTTGGCGCGGT
GCGCTCTCGGTAATGATATTCCAGGCTTCTCATGCAGTCCCCTCTACACA
CGCACCCCACCTCTTCGTACAGCATTGCACGCATCAACAATTCATGGGCA
AGGGAAAGAAGCGCCGGGTGCCTTTGGCAGTCGAGGTACGTTTTCCTGGA
TACAGAGATGGGCAAGCGAAACATTGACTTGACTTCTTTCTTCAGAGTGC
ACGGTCGGGGAGGGGTCTTTATGGAGCATGCTAATGCAGACCCGTACTGT
ACCGTGCAGAGCATCATAAACCCGTCCACCGTCAAATACCTAAAATACTT
TCGACCTCCTCACCCCACAACCTTATCTACCCATCCATTTACGCAGCTCG
ACGACGACGCCAAGGAAGAACGGGTCCTGGAGCTGAAGCGAAAGCGCATG
TTGCGGCGGCGTATTGAGGGTCAGGGGGATGACGAGGAAAGCGCAGGCAA
CCATGCTCAGATGGAGGAAGAAGGAGAGGCCGCGGATGGGGGGGCGTCTG
ACAAGTTTCTCGACCCCAAGCTTTCCCGTAAGATCTTGCTGCAGGCTTCG
AAGCAGATGGCTGAGGAAGAACGCAGTAGCCACCAGCGTGGTGGAGCTGC
AGAGGCTGGAAAGGGGGTTGTTCGCTTCGCGTCCAGCGGCAGATGTGGTA
AGACACAGGCCCGGCGGCATGGCGACTCGATGGACAGCGACGATGACGAG
GACGGAGAAGACGCCTATAGGACGCTGGGGTGGGATGTGGAGGAAATGGA
CAAGTACGAGCATGAGGAAGAGGAGGAGGATGGAATGGTGGAATTCAAGG
AGGGAGCGGTGCATATGGGAGCGGGGGGTCTATCAGAGGCGGAGCAACGT
GTTGTCTCGTCCTTCATGGACATTGGCGCAGGGGAGCGCCGAACTCTGGC
CGATATTATTATGAATAAAATCCGTGAAAGAGCTGAGGAGGATGATCTAG
AGGTCAAGGGGCTGCCAGGGCAGGAAGGGGAAGACGGGGGCCGTTCCAAG
ATATCTCTTAAGGTTCGAGAGGTGTATGCGGAGATTGGAAAATTACTCAA
GACCTATACGGCGGGGAAGCTGCCCAAGGCTTTCAAAATCTTGCCTGCTC
TTGCAAACTGGGAGGAGGTAGTGTATTTGACACGCCCGGATGAATGGACT
CCTCATGCTACCTTTGCGGCGACGCGCATTTTTGCCTCGAATCTGAATGC
GAAGCTCTCGCAGCGATTTTTCAATTTGATTTTGCTTGAAAAGTGCCGCG
ATGATATTTGCGCAAACAAGAACCTGAATTATCACTATTACACGGGTGCG
TACTATAAAGGAATGGGGAAATCGAATAGATCTATCCGAGGGATACGCAC
ATCTTTCGAATTGTGCATCATGCGATGCGTAGAGCCCACATTTTTCTCTC
TCCGTCTTCTCTCCCTCCGAATTAAAAACTAAAACAGCGCTAAAAAAAGC
CATGTACAAGCCCGGAGCCTTCTTCAAGGGCATTCTTCTTCCGCTTATCC
AATCCGGGGACTGCACAATCCGCGAGGCCACCATCATCGGAAGTGTGTTG
GGAAAGGTCTCGATTCCTGTCAACCACGCCGCCGTCGTCCTCCTCAAGCT
GGCCACCGCCCGAGACTACTCCGCTCCCTGTTCCATTTTTCTGAAGGCTC
TCTTAAATAAGAAATACACCTTGCCATATCGCGTCATCGATGCTCTGGCT
GATTACTTCGTTCGGTTCGCTGAGTATGAAGGGCAGGGTCTGACGTCAGC
TACCAGTGCCACGGCCAGCAGCACGGGGCCCATCCTTCCGGTGCTCTGGC
ATCAGTCTTTACTTGTGTTCGCGCAGCGATATAAGGAAGAAATCACGAAG
GAAGACAAGGAGCGGTTGAGAGAGGTTTTGAAGGCGCATTCGCATCACCA
GATCACCCCGGAAGTGAGGAGGGAGTTGTTTAATTGTCGGAGTCGGGGGG
AACTAGATCCGAGCAATTTCAGGGGGAATGGGCAGAACGCTTTGTTGAGG
AGTATGAATTTTGTTTAAGGTGGTGTTGCCTTTTGGAGTGAGATAGGAGG
ACCACAGGGATGATTTCTCCCTGTTCTGAGAAAAGAGTGAAGAACAAGTA
CGAGAGGATGTGTGGAGG back to topCoding sequence (CDS) from alignment at chr5:574353..577520- >NO05G02140.1 ID=NO05G02140.1|Name=NO05G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr5:574353..577520- (Nannochloropsis oceanica)
ATGGGCAAGGGAAAGAAGCGCCGGGTGCCTTTGGCAGTCGAGCTCGACGA
CGACGCCAAGGAAGAACGGGTCCTGGAGCTGAAGCGAAAGCGCATGTTGC
GGCGGCGTATTGAGGGTCAGGGGGATGACGAGGAAAGCGCAGGCAACCAT
GCTCAGATGGAGGAAGAAGGAGAGGCCGCGGATGGGGGGGCGTCTGACAA
GTTTCTCGACCCCAAGCTTTCCCGTAAGATCTTGCTGCAGGCTTCGAAGC
AGATGGCTGAGGAAGAACGCAGTAGCCACCAGCGTGGTGGAGCTGCAGAG
GCTGGAAAGGGGGTTGTTCGCTTCGCGTCCAGCGGCAGATGTGGTAAGAC
ACAGGCCCGGCGGCATGGCGACTCGATGGACAGCGACGATGACGAGGACG
GAGAAGACGCCTATAGGACGCTGGGGTGGGATGTGGAGGAAATGGACAAG
TACGAGCATGAGGAAGAGGAGGAGGATGGAATGGTGGAATTCAAGGAGGG
AGCGGTGCATATGGGAGCGGGGGGTCTATCAGAGGCGGAGCAACGTGTTG
TCTCGTCCTTCATGGACATTGGCGCAGGGGAGCGCCGAACTCTGGCCGAT
ATTATTATGAATAAAATCCGTGAAAGAGCTGAGGAGGATGATCTAGAGGT
CAAGGGGCTGCCAGGGCAGGAAGGGGAAGACGGGGGCCGTTCCAAGATAT
CTCTTAAGGTTCGAGAGGTGTATGCGGAGATTGGAAAATTACTCAAGACC
TATACGGCGGGGAAGCTGCCCAAGGCTTTCAAAATCTTGCCTGCTCTTGC
AAACTGGGAGGAGGTAGTGTATTTGACACGCCCGGATGAATGGACTCCTC
ATGCTACCTTTGCGGCGACGCGCATTTTTGCCTCGAATCTGAATGCGAAG
CTCTCGCAGCGATTTTTCAATTTGATTTTGCTTGAAAAGTGCCGCGATGA
TATTTGCGCAAACAAGAACCTGAATTATCACTATTACACGGCGCTAAAAA
AAGCCATGTACAAGCCCGGAGCCTTCTTCAAGGGCATTCTTCTTCCGCTT
ATCCAATCCGGGGACTGCACAATCCGCGAGGCCACCATCATCGGAAGTGT
GTTGGGAAAGGTCTCGATTCCTGTCAACCACGCCGCCGTCGTCCTCCTCA
AGCTGGCCACCGCCCGAGACTACTCCGCTCCCTGTTCCATTTTTCTGAAG
GCTCTCTTAAATAAGAAATACACCTTGCCATATCGCGTCATCGATGCTCT
GGCTGATTACTTCGTTCGGTTCGCTGAGTATGAAGGGCAGGGTCTGACGT
CAGCTACCAGTGCCACGGCCAGCAGCACGGGGCCCATCCTTCCGGTGCTC
TGGCATCAGTCTTTACTTGTGTTCGCGCAGCGATATAAGGAAGAAATCAC
GAAGGAAGACAAGGAGCGGTTGAGAGAGGTTTTGAAGGCGCATTCGCATC
ACCAGATCACCCCGGAAGTGAGGAGGGAGTTGTTTAATTGTCGGAGTCGG
GGGGAACTAGATCCGAGCAATTTCAGGGGGAATGGGCAGAACGCTTTGTT
GAGGAGTATGAATTTTGTTTAA back to top
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