NO05G02100.1, NO05G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02100.1
Unique NameNO05G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2028
Alignment locationchr5:565063..567090 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:565063..567090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02100.1 vs.
Match: EWM28280.1 (solute carrier family 40 member 1 [Nannochloropsis gaditana])

HSP 1 Score: 511.1 bits (1315), Expect = 5.100e-141
Identity = 301/620 (48.55%), Postives = 380/620 (61.29%), Query Frame = 0 
Query:   45 VSPFSQRVADYVASGIPSTVFI--DPTRQSTVSLDINPAIAP------PASPNHHADCRKIILLRHLGCAILQRAWDFAVIILLTAMGPPNSFYLIASYGITVNLTVALLSPSAGAMIDRANRLRAVVLVTTAQNACVLGCCACFAVLLRGYLPTYSRGW--SLCIALVHVSGALNVLFQGLSNIILERDWVVVLADGDNAWLRSITANFKSIDLSCNLVAPFFVSLIQIAGGVEVLAWVFSAGNLVMIYSQHTALHRIYRDVPALALKDEGGEGESGRCARLKTDNDNHIEDEALGSNARDGAPP------------------SLLLACMSKRTGGAFRNLFSHAHTYAKQRAFTPGLALAMLYLTVLTFHSTMLAYLLKRGLSVTFVALAQGGSSAMGVLGTFCYERAAARVGTITVGLLAIWLQVACLTVAVGALFYPKWRGDHTSNKNVEDDAKTAQAALWFFIMGIGLSRFGLYAFDVAAAQISQYMVEENARGAVGGFQRTLESVFELLSYCLVLWRPHLEQFPSLAAISYIQVIAAASFFTVFAYSINGRLSGLDPEQRTQAGVGEMDKHGSGSTSSGGSVLDLGESDALVDSPFAPSHHF-KVPLHSGNRFV 636
            V+  S  V  Y A  +P       D    + VS  +  ++ P      P         R +IL RHL  A+LQR W+F+VI+LLT +GP NSF+LIA+YGITVNLTV L SPS G+ ID ANRLRAVVLVT+ QN CV+GCC CF + L G++ T   GW  SLC+ L+HV GALN+LFQGLSN+ILERDWVVVLA+ D+AWLRSIT N K+IDLS N+VAPF VS+IQ  G    +AW  S  N +MIY Q+ AL RIY++VPALA+KD G +         ++++D  + D+A+  +  +  P                   S     +  R    FRN F HA  YA+QR F PGLA+AMLY TVLTFH+TMLAYLL +GL + +VA+AQGGS+AMGVLGT  Y+ AA R GT+ VG++ +W QVACLTVAV AL+ P WR D     N  ++      A  FF+  +GLSR GL AFDVA AQ+ QY+V+E +RG VGGFQRTLES+FELL Y LVLWRP  +QFPS AA SYI V+AAA  F+ FA  +               G+G +   G   T     +   G   A   SP    +H+ K P+    R V
Sbjct:    7 VAQNSSTVYKYGAVEVPKDALFHGDQANPADVSSPLADSLKPSSASTMPMYDQKRTLYRNLILSRHLSSALLQRMWEFSVIMLLTVIGPSNSFHLIATYGITVNLTVVLFSPSIGSYIDEANRLRAVVLVTSMQNTCVVGCCICFIIALWGHIAT---GWALSLCVGLIHVGGALNMLFQGLSNVILERDWVVVLAEDDDAWLRSITTNLKAIDLSSNVVAPFLVSVIQSVGSNCAVAWTLSILNFLMIYMQYLALLRIYQEVPALAIKDRGVQ---------RSNHDAQVGDDAVYLDKTEEGPEKGRITESHASYKRITQKFSHFFGLIESRFSAVFRNGFLHAQIYARQRTFLPGLAMAMLYFTVLTFHNTMLAYLLSQGLHLNYVAMAQGGSAAMGVLGTLFYKWAATRFGTVCVGIMGLWQQVACLTVAVAALYVPLWRRD---RHNHAEEVNVVSIATAFFMGSVGLSRLGLIAFDVAGAQLFQYLVDEESRGVVGGFQRTLESMFELLMYFLVLWRPRPDQFPSSAAFSYITVVAAALIFSFFACRVR--------------GIGFVVLKGGFETDENRIIDHGGSRPAAASSPILSYNHYDKWPVSDSFRLV 597
The following BLAST results are available for this feature:
BLAST of NO05G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28280.15.100e-14148.55solute carrier family 40 member 1 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02100NO05G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02100.1NO05G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02100.1.cds1NO05G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02100.1 ID=NO05G02100.1|Name=NO05G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp
ATGGGCAAGCTGCCACTGCCCACTGTCCGCCCACAGGTAGAGGATAGTAG
ACAGACAGAAAGGACAGCCTTGCTCCACCCATCGCGGCACCAATCCCAGT
CATGCTCCACCGTACCCTGCTGTGTGGCCCCAGTATCACCGTTTTCGCAG
AGGGTCGCTGACTACGTAGCATCTGGCATTCCGTCGACGGTGTTTATCGA
CCCGACACGCCAATCTACGGTCTCCCTAGATATCAACCCTGCCATTGCCC
CCCCAGCTTCCCCGAACCACCATGCCGATTGCCGCAAGATCATCCTATTG
CGACATCTGGGATGCGCAATCCTGCAGCGCGCGTGGGATTTCGCGGTGAT
AATACTGCTTACAGCCATGGGCCCACCAAACTCATTCTATTTGATAGCTA
GCTATGGTATCACTGTCAATCTCACGGTGGCGCTCTTGTCCCCCTCGGCG
GGTGCCATGATCGACCGCGCCAATCGTCTGCGTGCCGTCGTGCTCGTGAC
GACGGCACAAAATGCGTGTGTTTTGGGTTGTTGTGCGTGCTTCGCTGTCC
TGCTTCGGGGCTATCTGCCAACATACAGTCGAGGTTGGTCCCTATGCATT
GCTTTGGTGCATGTTAGCGGTGCGTTGAACGTCCTTTTTCAAGGCCTCAG
CAACATCATTTTAGAAAGGGACTGGGTCGTGGTCCTAGCCGATGGTGACA
ACGCCTGGCTCCGATCCATCACTGCAAACTTTAAATCGATCGACTTGAGC
TGCAATTTAGTTGCGCCATTTTTTGTTTCTCTAATCCAAATAGCGGGCGG
TGTGGAAGTCCTTGCTTGGGTTTTTTCAGCTGGTAATTTGGTCATGATCT
ACTCGCAGCATACGGCGCTACACCGCATTTATCGCGACGTCCCAGCGCTG
GCTTTGAAGGACGAAGGAGGCGAGGGCGAAAGTGGACGTTGTGCAAGGCT
GAAAACTGACAACGATAATCATATAGAGGACGAGGCTTTGGGTTCGAACG
CTCGCGACGGCGCTCCTCCATCTTTGCTCCTCGCATGCATGAGCAAGCGT
ACTGGTGGGGCGTTCCGCAATTTGTTTTCGCATGCCCACACGTACGCAAA
ACAGCGCGCGTTCACTCCCGGCTTGGCTCTCGCAATGTTGTACCTAACGG
TGCTAACTTTTCACAGCACTATGCTTGCTTACCTTTTGAAGCGGGGCCTG
AGTGTTACTTTCGTTGCGTTGGCGCAGGGGGGAAGCTCCGCGATGGGTGT
TCTAGGCACCTTCTGCTATGAACGGGCTGCTGCTCGGGTAGGAACAATAA
CGGTGGGTCTCCTGGCCATATGGCTGCAGGTAGCCTGTCTGACTGTTGCG
GTGGGCGCTTTGTTTTACCCAAAATGGCGGGGGGATCATACAAGTAATAA
AAATGTTGAAGACGACGCCAAGACGGCGCAGGCGGCGCTCTGGTTTTTCA
TAATGGGTATCGGCCTCTCCCGTTTTGGTCTATATGCCTTTGATGTGGCC
GCCGCGCAAATATCTCAATACATGGTTGAGGAGAATGCGAGAGGGGCCGT
CGGGGGATTTCAACGCACTTTGGAGTCTGTTTTTGAGCTGTTGTCGTACT
GCTTGGTCTTGTGGCGACCCCACCTCGAACAATTCCCCTCTTTGGCTGCC
ATTTCTTACATTCAAGTTATTGCCGCCGCCTCTTTTTTTACTGTCTTTGC
GTACAGCATAAATGGACGGCTATCAGGTCTAGATCCCGAGCAAAGGACTC
AGGCTGGGGTCGGCGAGATGGACAAGCATGGCAGCGGCAGCACTAGCAGC
GGCGGTAGCGTCCTTGATTTAGGAGAGAGTGACGCATTGGTGGATTCTCC
CTTCGCTCCCTCGCATCATTTTAAAGTGCCGTTGCATTCTGGAAATCGTT
TTGTGCTTTTTAATCCTTCTCTCACGTCCAGGCAGGGCGAGCGGGAGCGG
GAGGGACAGGTAATTGAGGGGGTGAAGGCAAGGAGTGTTAACGATGACAA
TCAAGCTATTGAACCCAGACAAGAATGA
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protein sequence of NO05G02100.1

>NO05G02100.1-protein ID=NO05G02100.1-protein|Name=NO05G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp
MGKLPLPTVRPQVEDSRQTERTALLHPSRHQSQSCSTVPCCVAPVSPFSQ
RVADYVASGIPSTVFIDPTRQSTVSLDINPAIAPPASPNHHADCRKIILL
RHLGCAILQRAWDFAVIILLTAMGPPNSFYLIASYGITVNLTVALLSPSA
GAMIDRANRLRAVVLVTTAQNACVLGCCACFAVLLRGYLPTYSRGWSLCI
ALVHVSGALNVLFQGLSNIILERDWVVVLADGDNAWLRSITANFKSIDLS
CNLVAPFFVSLIQIAGGVEVLAWVFSAGNLVMIYSQHTALHRIYRDVPAL
ALKDEGGEGESGRCARLKTDNDNHIEDEALGSNARDGAPPSLLLACMSKR
TGGAFRNLFSHAHTYAKQRAFTPGLALAMLYLTVLTFHSTMLAYLLKRGL
SVTFVALAQGGSSAMGVLGTFCYERAAARVGTITVGLLAIWLQVACLTVA
VGALFYPKWRGDHTSNKNVEDDAKTAQAALWFFIMGIGLSRFGLYAFDVA
AAQISQYMVEENARGAVGGFQRTLESVFELLSYCLVLWRPHLEQFPSLAA
ISYIQVIAAASFFTVFAYSINGRLSGLDPEQRTQAGVGEMDKHGSGSTSS
GGSVLDLGESDALVDSPFAPSHHFKVPLHSGNRFVLFNPSLTSRQGERER
EGQVIEGVKARSVNDDNQAIEPRQE*
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mRNA from alignment at chr5:565063..567090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02100.1 ID=NO05G02100.1|Name=NO05G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at chr5:565063..567090- (Nannochloropsis oceanica)
ATGGGCAAGCTGCCACTGCCCACTGTCCGCCCACAGGTAGAGGATAGTAG
ACAGACAGAAAGGACAGCCTTGCTCCACCCATCGCGGCACCAATCCCAGT
CATGCTCCACCGTACCCTGCTGTGTGGCCCCAGTATCACCGTTTTCGCAG
AGGGTCGCTGACTACGTAGCATCTGGCATTCCGTCGACGGTGTTTATCGA
CCCGACACGCCAATCTACGGTCTCCCTAGATATCAACCCTGCCATTGCCC
CCCCAGCTTCCCCGAACCACCATGCCGATTGCCGCAAGATCATCCTATTG
CGACATCTGGGATGCGCAATCCTGCAGCGCGCGTGGGATTTCGCGGTGAT
AATACTGCTTACAGCCATGGGCCCACCAAACTCATTCTATTTGATAGCTA
GCTATGGTATCACTGTCAATCTCACGGTGGCGCTCTTGTCCCCCTCGGCG
GGTGCCATGATCGACCGCGCCAATCGTCTGCGTGCCGTCGTGCTCGTGAC
GACGGCACAAAATGCGTGTGTTTTGGGTTGTTGTGCGTGCTTCGCTGTCC
TGCTTCGGGGCTATCTGCCAACATACAGTCGAGGTTGGTCCCTATGCATT
GCTTTGGTGCATGTTAGCGGTGCGTTGAACGTCCTTTTTCAAGGCCTCAG
CAACATCATTTTAGAAAGGGACTGGGTCGTGGTCCTAGCCGATGGTGACA
ACGCCTGGCTCCGATCCATCACTGCAAACTTTAAATCGATCGACTTGAGC
TGCAATTTAGTTGCGCCATTTTTTGTTTCTCTAATCCAAATAGCGGGCGG
TGTGGAAGTCCTTGCTTGGGTTTTTTCAGCTGGTAATTTGGTCATGATCT
ACTCGCAGCATACGGCGCTACACCGCATTTATCGCGACGTCCCAGCGCTG
GCTTTGAAGGACGAAGGAGGCGAGGGCGAAAGTGGACGTTGTGCAAGGCT
GAAAACTGACAACGATAATCATATAGAGGACGAGGCTTTGGGTTCGAACG
CTCGCGACGGCGCTCCTCCATCTTTGCTCCTCGCATGCATGAGCAAGCGT
ACTGGTGGGGCGTTCCGCAATTTGTTTTCGCATGCCCACACGTACGCAAA
ACAGCGCGCGTTCACTCCCGGCTTGGCTCTCGCAATGTTGTACCTAACGG
TGCTAACTTTTCACAGCACTATGCTTGCTTACCTTTTGAAGCGGGGCCTG
AGTGTTACTTTCGTTGCGTTGGCGCAGGGGGGAAGCTCCGCGATGGGTGT
TCTAGGCACCTTCTGCTATGAACGGGCTGCTGCTCGGGTAGGAACAATAA
CGGTGGGTCTCCTGGCCATATGGCTGCAGGTAGCCTGTCTGACTGTTGCG
GTGGGCGCTTTGTTTTACCCAAAATGGCGGGGGGATCATACAAGTAATAA
AAATGTTGAAGACGACGCCAAGACGGCGCAGGCGGCGCTCTGGTTTTTCA
TAATGGGTATCGGCCTCTCCCGTTTTGGTCTATATGCCTTTGATGTGGCC
GCCGCGCAAATATCTCAATACATGGTTGAGGAGAATGCGAGAGGGGCCGT
CGGGGGATTTCAACGCACTTTGGAGTCTGTTTTTGAGCTGTTGTCGTACT
GCTTGGTCTTGTGGCGACCCCACCTCGAACAATTCCCCTCTTTGGCTGCC
ATTTCTTACATTCAAGTTATTGCCGCCGCCTCTTTTTTTACTGTCTTTGC
GTACAGCATAAATGGACGGCTATCAGGTCTAGATCCCGAGCAAAGGACTC
AGGCTGGGGTCGGCGAGATGGACAAGCATGGCAGCGGCAGCACTAGCAGC
GGCGGTAGCGTCCTTGATTTAGGAGAGAGTGACGCATTGGTGGATTCTCC
CTTCGCTCCCTCGCATCATTTTAAAGTGCCGTTGCATTCTGGAAATCGTT
TTGTGCTTTTTAATCCTTCTCTCACGTCCAGGCAGGGCGAGCGGGAGCGG
GAGGGACAGGTAATTGAGGGGGTGAAGGCAAGGAGTGTTAACGATGACAA
TCAAGCTATTGAACCCAGACAAGAATGA
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Coding sequence (CDS) from alignment at chr5:565063..567090-

>NO05G02100.1 ID=NO05G02100.1|Name=NO05G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at chr5:565063..567090- (Nannochloropsis oceanica)
ATGGGCAAGCTGCCACTGCCCACTGTCCGCCCACAGGTAGAGGATAGTAG
ACAGACAGAAAGGACAGCCTTGCTCCACCCATCGCGGCACCAATCCCAGT
CATGCTCCACCGTACCCTGCTGTGTGGCCCCAGTATCACCGTTTTCGCAG
AGGGTCGCTGACTACGTAGCATCTGGCATTCCGTCGACGGTGTTTATCGA
CCCGACACGCCAATCTACGGTCTCCCTAGATATCAACCCTGCCATTGCCC
CCCCAGCTTCCCCGAACCACCATGCCGATTGCCGCAAGATCATCCTATTG
CGACATCTGGGATGCGCAATCCTGCAGCGCGCGTGGGATTTCGCGGTGAT
AATACTGCTTACAGCCATGGGCCCACCAAACTCATTCTATTTGATAGCTA
GCTATGGTATCACTGTCAATCTCACGGTGGCGCTCTTGTCCCCCTCGGCG
GGTGCCATGATCGACCGCGCCAATCGTCTGCGTGCCGTCGTGCTCGTGAC
GACGGCACAAAATGCGTGTGTTTTGGGTTGTTGTGCGTGCTTCGCTGTCC
TGCTTCGGGGCTATCTGCCAACATACAGTCGAGGTTGGTCCCTATGCATT
GCTTTGGTGCATGTTAGCGGTGCGTTGAACGTCCTTTTTCAAGGCCTCAG
CAACATCATTTTAGAAAGGGACTGGGTCGTGGTCCTAGCCGATGGTGACA
ACGCCTGGCTCCGATCCATCACTGCAAACTTTAAATCGATCGACTTGAGC
TGCAATTTAGTTGCGCCATTTTTTGTTTCTCTAATCCAAATAGCGGGCGG
TGTGGAAGTCCTTGCTTGGGTTTTTTCAGCTGGTAATTTGGTCATGATCT
ACTCGCAGCATACGGCGCTACACCGCATTTATCGCGACGTCCCAGCGCTG
GCTTTGAAGGACGAAGGAGGCGAGGGCGAAAGTGGACGTTGTGCAAGGCT
GAAAACTGACAACGATAATCATATAGAGGACGAGGCTTTGGGTTCGAACG
CTCGCGACGGCGCTCCTCCATCTTTGCTCCTCGCATGCATGAGCAAGCGT
ACTGGTGGGGCGTTCCGCAATTTGTTTTCGCATGCCCACACGTACGCAAA
ACAGCGCGCGTTCACTCCCGGCTTGGCTCTCGCAATGTTGTACCTAACGG
TGCTAACTTTTCACAGCACTATGCTTGCTTACCTTTTGAAGCGGGGCCTG
AGTGTTACTTTCGTTGCGTTGGCGCAGGGGGGAAGCTCCGCGATGGGTGT
TCTAGGCACCTTCTGCTATGAACGGGCTGCTGCTCGGGTAGGAACAATAA
CGGTGGGTCTCCTGGCCATATGGCTGCAGGTAGCCTGTCTGACTGTTGCG
GTGGGCGCTTTGTTTTACCCAAAATGGCGGGGGGATCATACAAGTAATAA
AAATGTTGAAGACGACGCCAAGACGGCGCAGGCGGCGCTCTGGTTTTTCA
TAATGGGTATCGGCCTCTCCCGTTTTGGTCTATATGCCTTTGATGTGGCC
GCCGCGCAAATATCTCAATACATGGTTGAGGAGAATGCGAGAGGGGCCGT
CGGGGGATTTCAACGCACTTTGGAGTCTGTTTTTGAGCTGTTGTCGTACT
GCTTGGTCTTGTGGCGACCCCACCTCGAACAATTCCCCTCTTTGGCTGCC
ATTTCTTACATTCAAGTTATTGCCGCCGCCTCTTTTTTTACTGTCTTTGC
GTACAGCATAAATGGACGGCTATCAGGTCTAGATCCCGAGCAAAGGACTC
AGGCTGGGGTCGGCGAGATGGACAAGCATGGCAGCGGCAGCACTAGCAGC
GGCGGTAGCGTCCTTGATTTAGGAGAGAGTGACGCATTGGTGGATTCTCC
CTTCGCTCCCTCGCATCATTTTAAAGTGCCGTTGCATTCTGGAAATCGTT
TTGTGCTTTTTAATCCTTCTCTCACGTCCAGGCAGGGCGAGCGGGAGCGG
GAGGGACAGGTAATTGAGGGGGTGAAGGCAAGGAGTGTTAACGATGACAA
TCAAGCTATTGAACCCAGACAAGAATGA
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Synonyms
Publications