NO05G02060.1, NO05G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02060.1
Unique NameNO05G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length660
Alignment locationchr5:557321..558089 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:557321..558089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02060.1 vs.
Match: EWM28243.1 (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana])

HSP 1 Score: 402.1 bits (1032), Expect = 1.100e-108
Identity = 190/219 (86.76%), Postives = 201/219 (91.78%), Query Frame = 0 
Query:    1 MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDALGDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKVVLTPWTETDFRTNVAPWWK 220
            MKTA VLAT FCG  GFL P +P+  V AR+NSGR+ TKMAE  GEEPFVPDMDRRKLMN+ILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGL AKDALGDDV V GWL+THQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAE+KF+CPCHGSQYDKTGKVVRGPAPLSLALAHV E+D KV+LTPWTETDFRT+ APWWK
Sbjct:   20 MKTAFVLATFFCGVHGFLVPGIPSASV-ARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
The following BLAST results are available for this feature:
BLAST of NO05G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28243.11.100e-10886.76cytochrome b6-f complex iron-sulfur subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02060NO05G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02060.1NO05G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02060.1.cds1NO05G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02060.1.cds2NO05G02060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02060.1 ID=NO05G02060.1|Name=NO05G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=660bp
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAA
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protein sequence of NO05G02060.1

>NO05G02060.1-protein ID=NO05G02060.1-protein|Name=NO05G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNSILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLVAKDAL
GDDVKVSGWLATHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTH
LGCVVPWNKAENKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNENDDKV
VLTPWTETDFRTNVAPWWK*
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mRNA from alignment at chr5:557321..558089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02060.1 ID=NO05G02060.1|Name=NO05G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=769bp|location=Sequence derived from alignment at chr5:557321..558089+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTACGTACCGACCGGTGCAGTGATGTATTGTGGTTGGGTGGGCAACTTGT
GGCTGTGCCGCTCAGATGCATTCACCTCTTTCCTCTTTCCTCTCCCCCTC
ACGACACAGGTGGAAGTAA
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Coding sequence (CDS) from alignment at chr5:557321..558089+

>NO05G02060.1 ID=NO05G02060.1|Name=NO05G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at chr5:557321..558089+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAGCATTTTGTTGGGCTCCGT
GGGCTTGAACGTTGCCGGTCTGGCCGTCCCTTACATCGCCTTCTTCGTGC
CTCGCACGGGGGGCGGTGCCGGCGGGGGACTGGTCGCCAAAGATGCGCTA
GGTGATGACGTGAAGGTGTCGGGCTGGTTGGCCACCCATCAGGCGGGCGA
TCGCTCCCTAGTGCAGGGCCTTAAGGGCGACGCCACGTATCTGATCGTGA
AGGAGGACAAGACCATTGAGAACTACGGCTTGAACGCCGTCTGCACGCAT
TTGGGATGTGTCGTGCCCTGGAACAAGGCCGAGAACAAATTCATGTGCCC
GTGCCACGGCTCCCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCG
CCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGAATGACGACAAGGTC
GTGCTGACGCCCTGGACAGAAACGGATTTCCGAACGAACGTAGCCCCTTG
GTGGAAGTAA
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Synonyms
Publications