NO05G01960.1, NO05G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01960.1
Unique NameNO05G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr5:534973..535911 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:534973..535911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01960.1 vs.
Match: EWM28228.1 (hypothetical protein Naga_100004g120 [Nannochloropsis gaditana])

HSP 1 Score: 267.3 bits (682), Expect = 5.900e-68
Identity = 161/314 (51.27%), Postives = 205/314 (65.29%), Query Frame = 0 
Query:    1 MPVLPLTSEGASTRPPSSSWLSRLQSSAWGG--GNESSTLPTEKDPQPPQQQAGVGS----------ASEVERDVLVGSH-DETTKSTNGSPIF--STSSSQEVWRDKLHKALRAKVMLVSNAWTATLVLTILLAVVFRALQPTEEPGIGVAHYAWRVDPLDPGQRSLAELDLDVRVTGSFSMEFDPSIVELYPMDADELVSVEHREEAALAALKLAEVPIPNWSLTRGHNIGIVSAKKPSGYFSTGQNIPGRGRAGGDDEIKEVILTVNMYGFVTVFASLPSRIFMKCYVMTDLASVKGPRCESVYLPHIKRG 300
            +PVLPLT+ G  T    SS   RL  ++         +   T ++   P+Q    GS          A++V R   +G   D  T+S N +     S+S SQ  WR++L K LR K+MLV+NAWTATL+LTILLAVVFRALQPTEEPG+GV HYAWR DP DP + SL ELDLDVR  G F MEF PS V+LYPM+ADE V V HR+EAALA   LAE+ +P+W++T GH+  IVSA K S +FS         R+    + ++VIL+ N +G+VT+FASLPSRIF+KCY+ TDLASV+G RCES YLP ++RG
Sbjct:    2 VPVLPLTATGQPTTSLLSSLGRRLSVASRASLLHGRRAGRSTSREGTTPRQLLQEGSKQGHRIMGVDATKVGR---IGDEIDGATRSENSNDKLPPSSSPSQAAWREQLRKTLRGKLMLVTNAWTATLILTILLAVVFRALQPTEEPGLGVTHYAWRGDPSDPNRLSLEELDLDVRGIGRFKMEFGPSKVQLYPMEADEEVRVGHRDEAALADFLLAEISMPSWNVTLGHDFTIVSAVKASTFFSA-------RRSPLTSKREQVILSGNFHGYVTLFASLPSRIFLKCYLQTDLASVEGSRCESQYLPDMRRG 305
The following BLAST results are available for this feature:
BLAST of NO05G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28228.15.900e-6851.27hypothetical protein Naga_100004g120 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01960NO05G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01960.1NO05G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01960.1.cds1NO05G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01960.1 ID=NO05G01960.1|Name=NO05G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGACACGGCCTCCGTC
GTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGGGCGGCGGCAATG
AAAGCAGCACATTACCGACGGAAAAGGACCCACAACCGCCGCAGCAGCAG
GCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGTGCTTGTCGGTTC
GCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCATCTTCTCTACCT
CCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAGGCCCTGCGGGCC
AAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTTGGTCCTAACAAT
TCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGGAGGAACCAGGTA
TCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTAGACCCAGGGCAG
CGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGACGGGTAGTTTCAG
CATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGATGGACGCGGATG
AATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTGGCTGCTTTGAAA
CTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCGTGGGCATAACAT
TGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTTCTACGGGTCAGA
ATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAAATCAAGGAGGTA
ATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTTTGCTTCTTTACC
GTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATCTGGCGAGTGTAA
AGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATAAAGAGAGGGGCG
GTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATAG
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protein sequence of NO05G01960.1

>NO05G01960.1-protein ID=NO05G01960.1-protein|Name=NO05G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPVLPLTSEGASTRPPSSSWLSRLQSSAWGGGNESSTLPTEKDPQPPQQQ
AGVGSASEVERDVLVGSHDETTKSTNGSPIFSTSSSQEVWRDKLHKALRA
KVMLVSNAWTATLVLTILLAVVFRALQPTEEPGIGVAHYAWRVDPLDPGQ
RSLAELDLDVRVTGSFSMEFDPSIVELYPMDADELVSVEHREEAALAALK
LAEVPIPNWSLTRGHNIGIVSAKKPSGYFSTGQNIPGRGRAGGDDEIKEV
ILTVNMYGFVTVFASLPSRIFMKCYVMTDLASVKGPRCESVYLPHIKRGA
VEEGEGEAGNGR*
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mRNA from alignment at chr5:534973..535911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01960.1 ID=NO05G01960.1|Name=NO05G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp|location=Sequence derived from alignment at chr5:534973..535911+ (Nannochloropsis oceanica)
ATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGACACGGCCTCCGTC
GTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGGGCGGCGGCAATG
AAAGCAGCACATTACCGACGGAAAAGGACCCACAACCGCCGCAGCAGCAG
GCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGTGCTTGTCGGTTC
GCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCATCTTCTCTACCT
CCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAGGCCCTGCGGGCC
AAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTTGGTCCTAACAAT
TCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGGAGGAACCAGGTA
TCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTAGACCCAGGGCAG
CGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGACGGGTAGTTTCAG
CATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGATGGACGCGGATG
AATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTGGCTGCTTTGAAA
CTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCGTGGGCATAACAT
TGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTTCTACGGGTCAGA
ATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAAATCAAGGAGGTA
ATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTTTGCTTCTTTACC
GTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATCTGGCGAGTGTAA
AGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATAAAGAGAGGGGCG
GTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATAG
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Coding sequence (CDS) from alignment at chr5:534973..535911+

>NO05G01960.1 ID=NO05G01960.1|Name=NO05G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr5:534973..535911+ (Nannochloropsis oceanica)
ATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGACACGGCCTCCGTC
GTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGGGCGGCGGCAATG
AAAGCAGCACATTACCGACGGAAAAGGACCCACAACCGCCGCAGCAGCAG
GCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGTGCTTGTCGGTTC
GCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCATCTTCTCTACCT
CCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAGGCCCTGCGGGCC
AAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTTGGTCCTAACAAT
TCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGGAGGAACCAGGTA
TCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTAGACCCAGGGCAG
CGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGACGGGTAGTTTCAG
CATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGATGGACGCGGATG
AATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTGGCTGCTTTGAAA
CTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCGTGGGCATAACAT
TGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTTCTACGGGTCAGA
ATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAAATCAAGGAGGTA
ATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTTTGCTTCTTTACC
GTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATCTGGCGAGTGTAA
AGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATAAAGAGAGGGGCG
GTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATAG
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Synonyms
Publications