NO05G01660.1, NO05G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01660.1
Unique NameNO05G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length651
Alignment locationchr5:455930..456580 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:455930..456580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01660.1 vs.
Match: EWM28160.1 (dephospho- kinase [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68
Identity = 139/212 (65.57%), Postives = 166/212 (78.30%), Query Frame = 0 
Query:    2 SGAKRLFVHGLTGGIATGKSHACGVLQSLGATILHADLLAHQCYAPQTPENEKLRQTFGTSIFTADGEVDRAKLGKLVFSEDQQLLK-LNKVMFPAIERRTKEEIARLEIEGRSWVVVEAAVLFEAGWERWMDEVWTMVVDPAVARLRLMKRNGLTAMEAEGRIRAQMSNEERVQRARVVIDSKGSKEETAGKLRVAVNDLKKRVKKKIALD 213
            +G K + VHGLTGGIA+GK+HAC VL+ LGAT+L+ADLLAH CYAP TP N++LR+ FG SIFT DG VDR KLGKLVF  D + L+ LNK+MFPA E R KEEIARL  EG +WVVVEAAVL EAGW+ WMDEVWTM++DP +A+ RLM R+G+TA EA+ RI A  SNE R + A ++IDS GSKE+TA KLRVA  DLK+RVK    LD
Sbjct:   12 AGMKSVLVHGLTGGIASGKTHACSVLRGLGATVLNADLLAHACYAPHTPANQQLRKAFGPSIFTTDGRVDRKKLGKLVFQRDHRSLQQLNKIMFPATEARAKEEIARLTTEGHAWVVVEAAVLVEAGWDLWMDEVWTMLIDPKLAQARLMDRDGMTAEEAQRRIAALASNEVRNKAATLLIDSSGSKEQTAAKLRVAAKDLKRRVKDVHNLD 223
The following BLAST results are available for this feature:
BLAST of NO05G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28160.11.100e-6865.57dephospho- kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01660NO05G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01660.1NO05G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01660.1.cds1NO05G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01660.1 ID=NO05G01660.1|Name=NO05G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
ATGTCCGGAGCGAAGCGGCTGTTCGTCCACGGCCTTACCGGAGGCATTGC
CACTGGCAAAAGCCATGCATGTGGCGTCCTCCAATCATTAGGTGCCACCA
TCCTCCACGCCGATCTTCTTGCCCACCAATGCTATGCTCCCCAAACACCG
GAAAACGAAAAATTGCGTCAAACATTCGGCACAAGCATTTTCACGGCCGA
TGGGGAGGTGGATAGAGCGAAGCTGGGTAAGCTTGTTTTTTCTGAGGATC
AGCAGTTGCTGAAACTGAATAAGGTCATGTTTCCGGCCATTGAGAGGAGG
ACGAAAGAGGAGATTGCGCGGTTGGAAATTGAGGGGAGGAGTTGGGTAGT
GGTGGAGGCTGCGGTGTTGTTTGAGGCGGGGTGGGAGAGGTGGATGGATG
AGGTATGGACAATGGTGGTTGATCCTGCAGTGGCACGACTACGATTGATG
AAACGAAATGGTTTAACGGCCATGGAGGCGGAGGGGAGAATCAGAGCACA
GATGAGTAATGAGGAGAGGGTGCAAAGGGCCAGGGTTGTAATTGATTCGA
AAGGGAGCAAGGAGGAGACAGCGGGAAAATTAAGAGTAGCAGTAAATGAT
TTAAAGAAACGCGTTAAAAAAAAAATTGCGTTGGATTCTATGTCATGTTA
A
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protein sequence of NO05G01660.1

>NO05G01660.1-protein ID=NO05G01660.1-protein|Name=NO05G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MSGAKRLFVHGLTGGIATGKSHACGVLQSLGATILHADLLAHQCYAPQTP
ENEKLRQTFGTSIFTADGEVDRAKLGKLVFSEDQQLLKLNKVMFPAIERR
TKEEIARLEIEGRSWVVVEAAVLFEAGWERWMDEVWTMVVDPAVARLRLM
KRNGLTAMEAEGRIRAQMSNEERVQRARVVIDSKGSKEETAGKLRVAVND
LKKRVKKKIALDSMSC*
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mRNA from alignment at chr5:455930..456580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01660.1 ID=NO05G01660.1|Name=NO05G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at chr5:455930..456580- (Nannochloropsis oceanica)
ATGTCCGGAGCGAAGCGGCTGTTCGTCCACGGCCTTACCGGAGGCATTGC
CACTGGCAAAAGCCATGCATGTGGCGTCCTCCAATCATTAGGTGCCACCA
TCCTCCACGCCGATCTTCTTGCCCACCAATGCTATGCTCCCCAAACACCG
GAAAACGAAAAATTGCGTCAAACATTCGGCACAAGCATTTTCACGGCCGA
TGGGGAGGTGGATAGAGCGAAGCTGGGTAAGCTTGTTTTTTCTGAGGATC
AGCAGTTGCTGAAACTGAATAAGGTCATGTTTCCGGCCATTGAGAGGAGG
ACGAAAGAGGAGATTGCGCGGTTGGAAATTGAGGGGAGGAGTTGGGTAGT
GGTGGAGGCTGCGGTGTTGTTTGAGGCGGGGTGGGAGAGGTGGATGGATG
AGGTATGGACAATGGTGGTTGATCCTGCAGTGGCACGACTACGATTGATG
AAACGAAATGGTTTAACGGCCATGGAGGCGGAGGGGAGAATCAGAGCACA
GATGAGTAATGAGGAGAGGGTGCAAAGGGCCAGGGTTGTAATTGATTCGA
AAGGGAGCAAGGAGGAGACAGCGGGAAAATTAAGAGTAGCAGTAAATGAT
TTAAAGAAACGCGTTAAAAAAAAAATTGCGTTGGATTCTATGTCATGTTA
A
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Coding sequence (CDS) from alignment at chr5:455930..456580-

>NO05G01660.1 ID=NO05G01660.1|Name=NO05G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at chr5:455930..456580- (Nannochloropsis oceanica)
ATGTCCGGAGCGAAGCGGCTGTTCGTCCACGGCCTTACCGGAGGCATTGC
CACTGGCAAAAGCCATGCATGTGGCGTCCTCCAATCATTAGGTGCCACCA
TCCTCCACGCCGATCTTCTTGCCCACCAATGCTATGCTCCCCAAACACCG
GAAAACGAAAAATTGCGTCAAACATTCGGCACAAGCATTTTCACGGCCGA
TGGGGAGGTGGATAGAGCGAAGCTGGGTAAGCTTGTTTTTTCTGAGGATC
AGCAGTTGCTGAAACTGAATAAGGTCATGTTTCCGGCCATTGAGAGGAGG
ACGAAAGAGGAGATTGCGCGGTTGGAAATTGAGGGGAGGAGTTGGGTAGT
GGTGGAGGCTGCGGTGTTGTTTGAGGCGGGGTGGGAGAGGTGGATGGATG
AGGTATGGACAATGGTGGTTGATCCTGCAGTGGCACGACTACGATTGATG
AAACGAAATGGTTTAACGGCCATGGAGGCGGAGGGGAGAATCAGAGCACA
GATGAGTAATGAGGAGAGGGTGCAAAGGGCCAGGGTTGTAATTGATTCGA
AAGGGAGCAAGGAGGAGACAGCGGGAAAATTAAGAGTAGCAGTAAATGAT
TTAAAGAAACGCGTTAAAAAAAAAATTGCGTTGGATTCTATGTCATGTTA
A
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Synonyms
Publications