NO05G01500.1, NO05G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01500.1
Unique NameNO05G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr5:424396..425379 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:424396..425379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01500.1 vs.
Match: EWM28266.1 (nitroreductase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 398.7 bits (1023), Expect = 1.600e-107
Identity = 202/275 (73.45%), Postives = 232/275 (84.36%), Query Frame = 0 
Query:   21 HVDDEDE-LEMSSTTTGTAAFRKAVLARHSTKVFDATRQVPDETVAAILGLTLRSPTSFNVQPYTITIVQSKEMKQRLAACMLGPNKARVLQAPITAVFAADLDPVKLVPRLQAMERQERGLPEAYLATLPFSVSFLAGKGHLAHAFKDFFTTAMSPLQPMPSVSTLEAWSFKNTAIAASWYIMACSAHGLDTCPMEGFDGRRIMQVLRIPSPRYAIPLVVSTGFEMPLPLPSHTDAAADAGKGEGVHKKSPRFPPEAVVFKEAYGKPFKNIPVL 295
            H ++E+E  E S    G +AF++AVLARHSTK FDA R++ DET+AAIL LTLR PTSFNVQPYT+TIVQS++ KQ+LAACMLGPN ARVLQAP+TAVFAADLDPV+LVPR+Q++ER++RGLPEAYLATLPFSV+FLAGKGHLAHAFKD FTTAMSPLQPMPSVSTLEAWS+KNTAIAASWY++ACS HGLDTCPMEGFDGRRIM  L IP+ RYAIPLVVSTGF MPLP  S  +   +A       K+SPRFPPEAVVFK+ YG  +K I  L
Sbjct:   56 HSEEENEDHESSLARAGISAFKRAVLARHSTKAFDAKREIADETLAAILALTLRCPTSFNVQPYTVTIVQSEDTKQKLAACMLGPNSARVLQAPVTAVFAADLDPVQLVPRVQSLERRKRGLPEAYLATLPFSVAFLAGKGHLAHAFKDLFTTAMSPLQPMPSVSTLEAWSYKNTAIAASWYMLACSVHGLDTCPMEGFDGRRIMHELHIPASRYAIPLVVSTGFAMPLP-SSSPERNKEA-------KRSPRFPPEAVVFKDQYGHAYKGISQL 322
The following BLAST results are available for this feature:
BLAST of NO05G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28266.11.600e-10773.45nitroreductase-like protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01500NO05G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01500.1NO05G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01500.1.cds1NO05G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01500.1.cds2NO05G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01500.1 ID=NO05G01500.1|Name=NO05G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGCAC
CAGCACCAGCCACGTCGACGACGAGGACGAACTTGAGATGTCCTCCACCA
CAACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACC
AAAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCAT
CCTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACA
CCATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGC
ATGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGT
CTTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCA
TGGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCC
TTCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAA
AGATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGA
GTACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGG
TACATCATGGCCTGCAGTGCTCATGGGCTCGATACCTGTCCTATGGAGGG
ATTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGT
ATGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTT
CCCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCA
TAAGAAATCTCCCCGATTTCCACCAGAGGCGGTGGTGTTTAAGGAAGCGT
ATGGAAAACCTTTCAAGAATATTCCCGTGCTTTGA
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protein sequence of NO05G01500.1

>NO05G01500.1-protein ID=NO05G01500.1-protein|Name=NO05G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MITTLSSASLWMSCRRTSTSHVDDEDELEMSSTTTGTAAFRKAVLARHST
KVFDATRQVPDETVAAILGLTLRSPTSFNVQPYTITIVQSKEMKQRLAAC
MLGPNKARVLQAPITAVFAADLDPVKLVPRLQAMERQERGLPEAYLATLP
FSVSFLAGKGHLAHAFKDFFTTAMSPLQPMPSVSTLEAWSFKNTAIAASW
YIMACSAHGLDTCPMEGFDGRRIMQVLRIPSPRYAIPLVVSTGFEMPLPL
PSHTDAAADAGKGEGVHKKSPRFPPEAVVFKEAYGKPFKNIPVL*
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mRNA from alignment at chr5:424396..425379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01500.1 ID=NO05G01500.1|Name=NO05G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp|location=Sequence derived from alignment at chr5:424396..425379- (Nannochloropsis oceanica)
ATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGGTT
CGTGGTCAACAAAGGCTGCAGCATACGCCACCTCTTTACACCTCCGTCAT
CTGCACAAAATGCACGCTCTAGATGTCCTCTGCACTCACCCTTCAGCACC
AGCACCAGCCACGTCGACGACGAGGACGAACTTGAGATGTCCTCCACCAC
AACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACCA
AAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCATC
CTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACAC
CATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGCA
TGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGTC
TTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCAT
GGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCCT
TCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAAA
GATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGAG
TACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGGT
ACATCATGGCCTGCAGTGCTCATGGGCTCGATACCTGTCCTATGGAGGGA
TTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGTA
TGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTTC
CCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCAT
AAGAAATCTCCCCGATTTCCACCAGAGGCGGTGGTGTTTAAGGAAGCGTA
TGGAAAACCTTTCAAGAATATTCCCGTGCTTTGA
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Coding sequence (CDS) from alignment at chr5:424396..425379-

>NO05G01500.1 ID=NO05G01500.1|Name=NO05G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr5:424396..425379- (Nannochloropsis oceanica)
ATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGCAC
CAGCACCAGCCACGTCGACGACGAGGACGAACTTGAGATGTCCTCCACCA
CAACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACC
AAAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCAT
CCTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACA
CCATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGC
ATGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGT
CTTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCA
TGGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCC
TTCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAA
AGATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGA
GTACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGG
TACATCATGGCCTGCAGTGCTCATGGGCTCGATACCTGTCCTATGGAGGG
ATTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGT
ATGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTT
CCCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCA
TAAGAAATCTCCCCGATTTCCACCAGAGGCGGTGGTGTTTAAGGAAGCGT
ATGGAAAACCTTTCAAGAATATTCCCGTGCTTTGA
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Synonyms
Publications