NO05G01480.1, NO05G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01480.1
Unique NameNO05G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1430
Alignment locationchr5:420505..422284 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:420505..422284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01480.1 vs.
Match: EWM28219.1 (inosine-uridine preferring nucleoside hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 525.8 bits (1353), Expect = 1.100e-145
Identity = 254/336 (75.60%), Postives = 290/336 (86.31%), Query Frame = 0 
Query:   49 AFIPSAFSPARRFLIDCDPGVDDAIAIMMAVSEAARLSEQILAVTTVHGNAMLEQCAKNAAKVLDVLPVQTPHFDSRRIPVYRGCASPLLHSTHKYFPWHGQDGLGDAGLPDADARHIETEHATLAMIRLCKQYPGEVTLVALGPLTNVALACKLDEGFASAVKEVVIMGGTTRAKGNVSLTGEFNFHKDPEAAHIVLSAFSKSTLVSWETTEQHTVAWDVMEDFLTQAEGSCSRLGTFLRGVTRPFIRDKERLAGALICDAVAMAVALDPGVVTKSAECFVDVELQGAYGRGQTVIDWEGQMRGK-EGKEANVRVIESIDIARMHEMLLGIAKTA 384
            A  P+   P RRF+IDCDPGVDDAIAI+MAVSEAARL EQILAVTTVHGN  LE   KNA KVLDVLPVQTPHFDSRRIP++RGCASPL+HS H+YFPWHG DGLGDAGL DA++RH+E+EHA LAMIRLCKQY GEVTLV LGPLT+VALACKLD  F ++V+++++MGGTTRAKGNVSLT EFNFHKDPEAAHIVLS+F +S +VSWETTEQHTVAW+ ME+ L QAE SCS LGTFLRG+TRPF+R+K+R  GALICDAVAMAVA+DP VV    ECFVDVEL G YGRGQTVIDWEGQ++GK E   ANV+++E I++ RMHEMLLGI KTA
Sbjct:   19 AAAPTPSPPRRRFIIDCDPGVDDAIAILMAVSEAARLDEQILAVTTVHGNVPLELTTKNAMKVLDVLPVQTPHFDSRRIPIFRGCASPLIHSAHEYFPWHGLDGLGDAGLQDAESRHVESEHAALAMIRLCKQYAGEVTLVCLGPLTSVALACKLDPTFPASVRQMIVMGGTTRAKGNVSLTSEFNFHKDPEAAHIVLSSFPQSYMVSWETTEQHTVAWEFMEELLKQAEVSCSSLGTFLRGITRPFLREKDRWRGALICDAVAMAVAIDPEVVMSVTECFVDVELHGRYGRGQTVIDWEGQLKGKTEVGAANVKIVEKINMDRMHEMLLGIVKTA 354
The following BLAST results are available for this feature:
BLAST of NO05G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28219.11.100e-14575.60inosine-uridine preferring nucleoside hydrolase [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01480NO05G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01480.1NO05G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01480.1.cds1NO05G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01480.1.cds2NO05G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01480.1.cds3NO05G01480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01480.1.cds4NO05G01480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01480.1 ID=NO05G01480.1|Name=NO05G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
ATGGTCCGCCTCGCATCTGCTGTCGACTCAACCTCCGCACTACTGCACAC
AGGCAGAACGCTGGCGGCGCTGCGGTACCTCGCCGTCCAGGCCCTCCGGC
AACCCGCTCTAGCTCCTTCCTCCTCGCACGCACTCATGTCCGCTGCTTTT
ATTCCCTCCGCTTTTTCTCCAGCGCGCCGCTTCCTTATCGACTGTGACCC
CGGCGTCGACGATGCTATTGCCATCATGATGGCCGTCAGTGAAGCCGCCC
GACTCAGTGAACAAATTCTAGCCGTAACAACAGTGCATGGCAATGCGATG
CTAGAGCAATGTGCCAAGAATGCTGCCAAGGTACTCGACGTCCTCCCCGT
GCAAACACCGCACTTTGACTCCCGCCGCATCCCCGTCTATCGCGGCTGTG
CCTCGCCTCTCCTTCACAGCACTCACAAGTACTTCCCATGGCATGGACAG
GATGGCCTTGGCGACGCCGGCCTTCCCGACGCCGATGCCCGCCACATAGA
AACCGAGCATGCCACCTTGGCCATGATCCGGCTCTGCAAGCAATACCCCG
GTGAAGTGACCTTGGTCGCTTTGGGACCCTTGACGAACGTGGCACTGGCG
TGTAAGCTCGACGAGGGGTTTGCGAGTGCAGTAAAGGAGGTGGTGATAAT
GGGGGGAACGACGCGGGCGAAGGGCAATGTCAGCCTGACCGGTGAATTCA
ACTTTCATAAGGACCCCGAAGCCGCCCATATTGTCCTCTCTGCCTTCTCC
AAATCCACGCTGGTCTCGTGGGAAACCACCGAGCAACATACAGTGGCCTG
GGACGTCATGGAAGATTTCCTCACTCAAGCCGAAGGCTCGTGCTCGAGGC
TTGGTACCTTTCTCCGAGGGGTGACGCGTCCATTTATTCGAGATAAGGAG
CGGTTGGCGGGTGCATTGATATGTGACGCGGTTGCCATGGCAGTGGCCCT
GGACCCGGGCGTGGTTACGAAATCGGCGGAGTGCTTTGTGGACGTAGAGT
TGCAGGGGGCGTATGGGAGGGGGCAGACAGTGATTGATTGGGAGGGGCAG
ATGAGAGGGAAGGAGGGGAAGGAGGCGAATGTGCGAGTGATAGAGTCGAT
TGACATAGCACGGATGCACGAGATGCTGCTTGGTATCGCCAAGACGGCAA
GGGGGTAGCGAAGTGAGGCCGAGTAAAGAGTTGCTCGGTGACGTACATGG
AAAAGGAAGAAATGATGAAAGAGGAATGACAGCAGGGTGAGAGCTGAAGC
TAGAGGGGGGGGGCTGGGAAGCGGTGGGCGTGTAATAAAAATGAAAGAAA
GCAAATGAAAGATGCATGTTCCTACAAATTCTGTTGGGAATCGGACCCTC
GGCACCCAGTGATATCTCTTGGGGGCATGGGCGCGTAATTCACTCCCGCC
ATACACACAAAAATCGACACCCTAAATAAG
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protein sequence of NO05G01480.1

>NO05G01480.1-protein ID=NO05G01480.1-protein|Name=NO05G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MVRLASAVDSTSALLHTGRTLAALRYLAVQALRQPALAPSSSHALMSAAF
IPSAFSPARRFLIDCDPGVDDAIAIMMAVSEAARLSEQILAVTTVHGNAM
LEQCAKNAAKVLDVLPVQTPHFDSRRIPVYRGCASPLLHSTHKYFPWHGQ
DGLGDAGLPDADARHIETEHATLAMIRLCKQYPGEVTLVALGPLTNVALA
CKLDEGFASAVKEVVIMGGTTRAKGNVSLTGEFNFHKDPEAAHIVLSAFS
KSTLVSWETTEQHTVAWDVMEDFLTQAEGSCSRLGTFLRGVTRPFIRDKE
RLAGALICDAVAMAVALDPGVVTKSAECFVDVELQGAYGRGQTVIDWEGQ
MRGKEGKEANVRVIESIDIARMHEMLLGIAKTARG*
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mRNA from alignment at chr5:420505..422284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01480.1 ID=NO05G01480.1|Name=NO05G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at chr5:420505..422284- (Nannochloropsis oceanica)
ATGGTCCGCCTCGCATCTGCTGTCGACTCAACCTCCGCACTACTGCACAC
AGGCAGAACGCTGGCGGCGCTGCGGTACCTCGCCGTCCAGGCCCTCCGGC
AACCCGCTCTAGCTCCTTCCTCCTCGCACGCACTCATGTCCGCTGCTTTT
ATTCCCTCCGCTTTTTCTCCAGCGCGCCGCTTCCTTATCGACTGTGACCC
CGGCGTCGACGATGCTATTGCCATCATGATGGCCGTCAGTGAAGCCGCCC
GACTCAGTGAACAAATTCTAGCCGTAACAACAGTGCATGGCAATGCGATG
CTAGAGCAATGTGCCAAGAATGCTGCCAAGGTACTCGACGTCCTCCCCGT
GCAAACACCGCACTTTGACTCCCGCCGCATCCCCGTCTATCGCGGCTGTG
CCTCGCCTCTCCTTCACAGCACTCACAAGTACTTCCCATGGCATGGGTAT
GTAAAAGAAATGTACACGATAGTGACCATGCTGTATATTGGCTTAATGGG
GTATTTTCGCTCTTGCAACATATAGACAGGATGGCCTTGGCGACGCCGGC
CTTCCCGACGCCGATGCCCGCCACATAGAAACCGAGCATGCCACCTTGGC
CATGATCCGGCTCTGCAAGCAATACCCCGGTGAAGTGACCTTGGTCGCTT
TGGGACCCTTGACGAACGTGGCACTGGCGTGTAAGCTCGACGAGGGGTTT
GCGAGTGCAGTAAAGGAGGTGGTGATAATGGGGGGAACGACGCGGGCGAA
GGGCAATGTCAGCCTGACCGGTGAATTCAACTTTCATAAGGGTACGTCGG
ATTCTCCACGCCCGGGATGGAGGAAGGAGAAGATATTTTAAATATAGGAG
AGGAGAAGGTGACTCATTAATTCATGTGACTCATCTATCATTACTACCGC
CGACTGTCTCTACATTGACAGACCCCGAAGCCGCCCATATTGTCCTCTCT
GCCTTCTCCAAATCCACGCTGGTGCGTGGAAAGCTTTGTGTATTTGTTTG
GATCTCTTTTGCTTAGATGTTATTATCTTCTCCATTTTTGAAATATCGTC
ACAATTTGCCTTATGGCTCAAATTCTCCCTCCCTCCCTTCCTCTTTCCCT
CCCCCCTCGCAGGTCTCGTGGGAAACCACCGAGCAACATACAGTGGCCTG
GGACGTCATGGAAGATTTCCTCACTCAAGCCGAAGGCTCGTGCTCGAGGC
TTGGTACCTTTCTCCGAGGGGTGACGCGTCCATTTATTCGAGATAAGGAG
CGGTTGGCGGGTGCATTGATATGTGACGCGGTTGCCATGGCAGTGGCCCT
GGACCCGGGCGTGGTTACGAAATCGGCGGAGTGCTTTGTGGACGTAGAGT
TGCAGGGGGCGTATGGGAGGGGGCAGACAGTGATTGATTGGGAGGGGCAG
ATGAGAGGGAAGGAGGGGAAGGAGGCGAATGTGCGAGTGATAGAGTCGAT
TGACATAGCACGGATGCACGAGATGCTGCTTGGTATCGCCAAGACGGCAA
GGGGGTAGCGAAGTGAGGCCGAGTAAAGAGTTGCTCGGTGACGTACATGG
AAAAGGAAGAAATGATGAAAGAGGAATGACAGCAGGGTGAGAGCTGAAGC
TAGAGGGGGGGGGCTGGGAAGCGGTGGGCGTGTAATAAAAATGAAAGAAA
GCAAATGAAAGATGCATGTTCCTACAAATTCTGTTGGGAATCGGACCCTC
GGCACCCAGTGATATCTCTTGGGGGCATGGGCGCGTAATTCACTCCCGCC
ATACACACAAAAATCGACACCCTAAATAAG
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Coding sequence (CDS) from alignment at chr5:420505..422284-

>NO05G01480.1 ID=NO05G01480.1|Name=NO05G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr5:420505..422284- (Nannochloropsis oceanica)
ATGGTCCGCCTCGCATCTGCTGTCGACTCAACCTCCGCACTACTGCACAC
AGGCAGAACGCTGGCGGCGCTGCGGTACCTCGCCGTCCAGGCCCTCCGGC
AACCCGCTCTAGCTCCTTCCTCCTCGCACGCACTCATGTCCGCTGCTTTT
ATTCCCTCCGCTTTTTCTCCAGCGCGCCGCTTCCTTATCGACTGTGACCC
CGGCGTCGACGATGCTATTGCCATCATGATGGCCGTCAGTGAAGCCGCCC
GACTCAGTGAACAAATTCTAGCCGTAACAACAGTGCATGGCAATGCGATG
CTAGAGCAATGTGCCAAGAATGCTGCCAAGGTACTCGACGTCCTCCCCGT
GCAAACACCGCACTTTGACTCCCGCCGCATCCCCGTCTATCGCGGCTGTG
CCTCGCCTCTCCTTCACAGCACTCACAAGTACTTCCCATGGCATGGACAG
GATGGCCTTGGCGACGCCGGCCTTCCCGACGCCGATGCCCGCCACATAGA
AACCGAGCATGCCACCTTGGCCATGATCCGGCTCTGCAAGCAATACCCCG
GTGAAGTGACCTTGGTCGCTTTGGGACCCTTGACGAACGTGGCACTGGCG
TGTAAGCTCGACGAGGGGTTTGCGAGTGCAGTAAAGGAGGTGGTGATAAT
GGGGGGAACGACGCGGGCGAAGGGCAATGTCAGCCTGACCGGTGAATTCA
ACTTTCATAAGGACCCCGAAGCCGCCCATATTGTCCTCTCTGCCTTCTCC
AAATCCACGCTGGTCTCGTGGGAAACCACCGAGCAACATACAGTGGCCTG
GGACGTCATGGAAGATTTCCTCACTCAAGCCGAAGGCTCGTGCTCGAGGC
TTGGTACCTTTCTCCGAGGGGTGACGCGTCCATTTATTCGAGATAAGGAG
CGGTTGGCGGGTGCATTGATATGTGACGCGGTTGCCATGGCAGTGGCCCT
GGACCCGGGCGTGGTTACGAAATCGGCGGAGTGCTTTGTGGACGTAGAGT
TGCAGGGGGCGTATGGGAGGGGGCAGACAGTGATTGATTGGGAGGGGCAG
ATGAGAGGGAAGGAGGGGAAGGAGGCGAATGTGCGAGTGATAGAGTCGAT
TGACATAGCACGGATGCACGAGATGCTGCTTGGTATCGCCAAGACGGCAA
GGGGGTAG
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Synonyms
Publications