NO05G01280.1, NO05G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01280.1
Unique NameNO05G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length657
Alignment locationchr5:365206..365966 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:365206..365966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01280.1 vs.
Match: EWM28200.1 (arginine serine-rich splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 1.500e-38
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 0 
Query:   53 GTVPRVNPPRSHRGGAVASSAAFGGGAP---PPLKAECDQFLQSLTGGLGSSSSGNAAPSSSLPASQSLTPGASASTSSRIWLNSGNAAKYACYDAALNLIKELLTPHYRAQVIDKNGFKRLAEEVTLLLVQQLLEHRLEGRVDVPAHYKRVAENLVREAL 211
            G  P + PP    G A+   +  G G P   PPLKAEC+QFLQ+LTGG+ S+ +  + PSS         P  S+STSSRIWLNS NAA YACY+AALNL+K+LLTPHYRAQVIDK+ FKR+AEE TLLLVQQLL+HRLE + +VPA++K VA +LVR AL
Sbjct:  987 GPPPSMVPP----GPALPHESTVGSGGPNPPPPLKAECEQFLQTLTGGVSSTGTNASFPSS--------PPVPSSSTSSRIWLNSSNAAAYACYEAALNLVKDLLTPHYRAQVIDKDSFKRIAEETTLLLVQQLLQHRLEQQREVPANFKPVAADLVRTAL 1135
The following BLAST results are available for this feature:
BLAST of NO05G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28200.11.500e-3859.63arginine serine-rich splicing factor [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01280NO05G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01280.1NO05G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01280.1.cds1NO05G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01280.1.cds2NO05G01280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01280.1 ID=NO05G01280.1|Name=NO05G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGGTGGCCGACGGCGTTCTCGCTCCCGCTCACCTCCACGTGGAGTGGTT
CCTCCGCCGCTCCCTCCCTACCCTGGCGATCAAGGCCGCAAACGCTCCCG
TGATCGTCCCAGGGGCAGCCTGGGCCGTTCGCGTTCTCGTTCTCCGTCAA
ACCGGAGGCACCGTGCCGAGGGTGAACCCTCCGCGCTCTCACCGAGGTGG
TGCTGTGGCTTCAAGTGCTGCTTTTGGTGGAGGAGCGCCTCCGCCTCTCA
AGGCCGAGTGTGACCAGTTTCTGCAATCCTTGACGGGCGGCTTGGGCAGT
AGTAGTAGTGGAAATGCTGCGCCATCGTCCTCCTTGCCTGCTTCTCAATC
CTTGACTCCTGGTGCGTCTGCATCCACCTCATCTCGGATTTGGCTTAATT
CGGGCAATGCAGCTAAATATGCATGCTACGACGCGGCACTGAACCTTATC
AAAGAGCTGCTCACACCGCATTACCGTGCCCAAGTTATTGACAAAAATGG
TTTCAAACGCCTCGCGGAAGAAGTTACCTTGCTATTAGTCCAGCAGTTGC
TGGAGCATCGTTTGGAAGGGCGGGTGGACGTGCCAGCGCATTACAAGAGG
GTGGCGGAAAATTTGGTGAGAGAGGCCTTGCGGGGGCAGGGGGCAGGGAT
CATGTAA
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protein sequence of NO05G01280.1

>NO05G01280.1-protein ID=NO05G01280.1-protein|Name=NO05G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MVADGVLAPAHLHVEWFLRRSLPTLAIKAANAPVIVPGAAWAVRVLVLRQ
TGGTVPRVNPPRSHRGGAVASSAAFGGGAPPPLKAECDQFLQSLTGGLGS
SSSGNAAPSSSLPASQSLTPGASASTSSRIWLNSGNAAKYACYDAALNLI
KELLTPHYRAQVIDKNGFKRLAEEVTLLLVQQLLEHRLEGRVDVPAHYKR
VAENLVREALRGQGAGIM*
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mRNA from alignment at chr5:365206..365966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01280.1 ID=NO05G01280.1|Name=NO05G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=761bp|location=Sequence derived from alignment at chr5:365206..365966+ (Nannochloropsis oceanica)
ATGGTGGCCGACGGCGTTCTCGCTCCCGCTCACCTCCACGTGGAGTGGTT
CCTCCGCCGCTCCCTCCCTACCCTGGCGATCAAGGCCGCAAACGCTCCCG
TGATCGTCCCAGGGGCAGCCTGGGCCGTTCGCGTTCTCGTTCTCCGTCAA
ACCGGAGGCACCGTGCCGAGGGTGGTGTGGACCCGCGAGCGGCTATGCAG
CTCCCTCCCGGCCCTCCTTCTCAAGGACGGGACACCTACCCTCCCATGCA
CAATCATCTGCCTCCTCCCATGTCACAGAACCCTCCGCGCTCTCACCGAG
GTGGTGCTGTGGCTTCAAGTGCTGCTTTTGGTGGAGGAGCGCCTCCGCCT
CTCAAGGCCGAGTGTGACCAGTTTCTGCAATCCTTGACGGGCGGCTTGGG
CAGTAGTAGTAGTGGAAATGCTGCGCCATCGTCCTCCTTGCCTGCTTCTC
AATCCTTGACTCCTGGTGCGTCTGCATCCACCTCATCTCGGATTTGGCTT
AATTCGGGCAATGCAGCTAAATATGCATGCTACGACGCGGCACTGAACCT
TATCAAAGAGCTGCTCACACCGCATTACCGTGCCCAAGTTATTGACAAAA
ATGGTTTCAAACGCCTCGCGGAAGAAGTTACCTTGCTATTAGTCCAGCAG
TTGCTGGAGCATCGTTTGGAAGGGCGGGTGGACGTGCCAGCGCATTACAA
GAGGGTGGCGGAAAATTTGGTGAGAGAGGCCTTGCGGGGGCAGGGGGCAG
GGATCATGTAA
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Coding sequence (CDS) from alignment at chr5:365206..365966+

>NO05G01280.1 ID=NO05G01280.1|Name=NO05G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr5:365206..365966+ (Nannochloropsis oceanica)
ATGGTGGCCGACGGCGTTCTCGCTCCCGCTCACCTCCACGTGGAGTGGTT
CCTCCGCCGCTCCCTCCCTACCCTGGCGATCAAGGCCGCAAACGCTCCCG
TGATCGTCCCAGGGGCAGCCTGGGCCGTTCGCGTTCTCGTTCTCCGTCAA
ACCGGAGGCACCGTGCCGAGGGTGAACCCTCCGCGCTCTCACCGAGGTGG
TGCTGTGGCTTCAAGTGCTGCTTTTGGTGGAGGAGCGCCTCCGCCTCTCA
AGGCCGAGTGTGACCAGTTTCTGCAATCCTTGACGGGCGGCTTGGGCAGT
AGTAGTAGTGGAAATGCTGCGCCATCGTCCTCCTTGCCTGCTTCTCAATC
CTTGACTCCTGGTGCGTCTGCATCCACCTCATCTCGGATTTGGCTTAATT
CGGGCAATGCAGCTAAATATGCATGCTACGACGCGGCACTGAACCTTATC
AAAGAGCTGCTCACACCGCATTACCGTGCCCAAGTTATTGACAAAAATGG
TTTCAAACGCCTCGCGGAAGAAGTTACCTTGCTATTAGTCCAGCAGTTGC
TGGAGCATCGTTTGGAAGGGCGGGTGGACGTGCCAGCGCATTACAAGAGG
GTGGCGGAAAATTTGGTGAGAGAGGCCTTGCGGGGGCAGGGGGCAGGGAT
CATGTAA
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Synonyms
Publications