NO05G00750.1, NO05G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00750.1
Unique NameNO05G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr5:243035..243637 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:243035..243637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00750.1 vs.
Match: EWM28248.1 (hypothetical protein Naga_100004g2 [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 1.300e-28
Identity = 90/183 (49.18%), Postives = 106/183 (57.92%), Query Frame = 0 
Query:    1 MRLPPRTAKRFGWDWWAWNMVLAATPATILWYGLSRTREGMKGEMGQLKAAIAEQKEHMHRQ---DRQQQGRGGLTVKSDISTSPVVVVAG----VVKGGTPEERIAHLESRLAVLEGHL-----RGRDWNDGSESSNSSVGSSAMGEELLSGVKRRMLGQFEEGVLEALTKIRRGGSAAAAS 172
            MR P   AKRFGWDWWAWNM+LAATPAT+LWYGLS TREG+K E+GQLKAA+AEQ+  M      D     R GL  K     +P    AG       G  PEERIA LE RLA LE        R +      + S++S G  +  E  LSGV+RRML Q EEG +EA  K++ G  A   S
Sbjct:    7 MRAPAHAAKRFGWDWWAWNMLLAATPATMLWYGLSCTREGIKHEVGQLKAAMAEQRGDMQYNTPTDFPMDNR-GLRDKKSEEVTPTPGQAGREDMSAAGARPEERIARLEVRLAALERLSESQCERRQSLEKNMKGSDASEGGGS-EEPFLSGVRRRMLSQLEEGTMEAFLKMKGGPDALEES 187
The following BLAST results are available for this feature:
BLAST of NO05G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28248.11.300e-2849.18hypothetical protein Naga_100004g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00750NO05G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00750.1NO05G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00750.1.cds1NO05G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00750.1 ID=NO05G00750.1|Name=NO05G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGCGTCTTCCCCCCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGC
CTGGAACATGGTGCTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGC
TATCCCGGACACGGGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCC
GCGATTGCCGAGCAAAAGGAGCACATGCATCGACAGGACAGACAGCAGCA
AGGGAGGGGAGGATTGACCGTTAAAAGTGACATATCAACATCACCTGTTG
TGGTGGTGGCGGGGGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCG
CATCTGGAGTCCAGACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGA
TTGGAATGATGGATCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTA
TGGGAGAAGAATTGTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTT
GAGGAAGGAGTATTAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGC
CGCTGCTGCTTCTTCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTG
AGGAGAAGGGGAATGGAAAGAAAACGGTAGGGATGGAGCAATCAGCGCAA
TAA
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protein sequence of NO05G00750.1

>NO05G00750.1-protein ID=NO05G00750.1-protein|Name=NO05G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRLPPRTAKRFGWDWWAWNMVLAATPATILWYGLSRTREGMKGEMGQLKA
AIAEQKEHMHRQDRQQQGRGGLTVKSDISTSPVVVVAGVVKGGTPEERIA
HLESRLAVLEGHLRGRDWNDGSESSNSSVGSSAMGEELLSGVKRRMLGQF
EEGVLEALTKIRRGGSAAAASSTAAASVAAAAAEEKGNGKKTVGMEQSAQ
*
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mRNA from alignment at chr5:243035..243637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00750.1 ID=NO05G00750.1|Name=NO05G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp|location=Sequence derived from alignment at chr5:243035..243637+ (Nannochloropsis oceanica)
ATGCGTCTTCCCCCCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGC
CTGGAACATGGTGCTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGC
TATCCCGGACACGGGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCC
GCGATTGCCGAGCAAAAGGAGCACATGCATCGACAGGACAGACAGCAGCA
AGGGAGGGGAGGATTGACCGTTAAAAGTGACATATCAACATCACCTGTTG
TGGTGGTGGCGGGGGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCG
CATCTGGAGTCCAGACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGA
TTGGAATGATGGATCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTA
TGGGAGAAGAATTGTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTT
GAGGAAGGAGTATTAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGC
CGCTGCTGCTTCTTCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTG
AGGAGAAGGGGAATGGAAAGAAAACGGTAGGGATGGAGCAATCAGCGCAA
TAA
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Coding sequence (CDS) from alignment at chr5:243035..243637+

>NO05G00750.1 ID=NO05G00750.1|Name=NO05G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr5:243035..243637+ (Nannochloropsis oceanica)
ATGCGTCTTCCCCCCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGC
CTGGAACATGGTGCTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGC
TATCCCGGACACGGGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCC
GCGATTGCCGAGCAAAAGGAGCACATGCATCGACAGGACAGACAGCAGCA
AGGGAGGGGAGGATTGACCGTTAAAAGTGACATATCAACATCACCTGTTG
TGGTGGTGGCGGGGGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCG
CATCTGGAGTCCAGACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGA
TTGGAATGATGGATCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTA
TGGGAGAAGAATTGTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTT
GAGGAAGGAGTATTAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGC
CGCTGCTGCTTCTTCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTG
AGGAGAAGGGGAATGGAAAGAAAACGGTAGGGATGGAGCAATCAGCGCAA
TAA
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Synonyms
Publications