NO05G00710.1, NO05G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00710.1
Unique NameNO05G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2220
Alignment locationchr5:231859..234078 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:231859..234078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00710.1 vs.
Match: PNW82346.1 (hypothetical protein CHLRE_06g278234v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 79.0 bits (193), Expect = 7.100e-11
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:    2 PTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAATASVFAEAAARA 102
            PTQE+   I+A+ + LGMD +ED+    +AE +L APLP GW +   GE  E     F+YN A N ST+EHP+DE YRA ++K+K     +  AEA   A
Sbjct:  984 PTQEE---IVAYGKYLGMDVVEDADLIHIAEWALTAPLPEGWTVHLDGEGNE-----FFYNAATNASTYEHPMDEHYRAYYRKMKEQKQLAKMAEAQQAA 1075
The following BLAST results are available for this feature:
BLAST of NO05G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PNW82346.17.100e-1145.00hypothetical protein CHLRE_06g278234v5 [Chlamydomo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00710NO05G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00710.1NO05G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00710.1.cds1NO05G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00710.1 ID=NO05G00710.1|Name=NO05G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
ACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCGATG
GTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGTCTC
ATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTGCTT
CAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGAGCG
CAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTATCGC
CCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGGAAG
CAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTGGCC
AAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGCGCT
CAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTGAGG
CCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTGCGA
CAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGTTAT
ATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGCAGC
TACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAAGAA
AAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATATCA
GGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGTTGA
AGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAGGCG
TTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGCTGC
ATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCCCTT
CTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTC
ATCCTCAACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAAC
GTCTTAAAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAG
CGTTATGAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATT
GCCGTTGCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTAT
TGACAGCACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTT
ATTCATGTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGG
CAGGAGGGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGG
GGACCCAATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGG
GACATTGGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATT
TGAGGAAGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCA
GCCCCCTGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGG
CTCTTCTTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTA
GAGCCACTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTT
GGCGCTGTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAG
TAGCAGCGTGCGGGGCGTGGACGTGGAGGCCTGGCGTCGCAAATACGGCC
GTCCAGCGGCTCGGAATTGA
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protein sequence of NO05G00710.1

>NO05G00710.1-protein ID=NO05G00710.1-protein|Name=NO05G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MPTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGE
DGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAATASVFAEAAAR
AEQSVDKSRENEEEEEELVSLEEIREDVEALSDGEVDETRKQQQQQQQQQ
SPIAATQSALSASVPVSFPAPSSPPPTAPSSSASSTSNVAESTTLATLRA
QLTSMKQERTSLQDVIARLQGRLERERMDWEEEANRRVMMKEKEVQVRVA
KAVEAAALEWQEKVGALKDELEKATRTSSSSTEATASKHQEDSQQLQQLR
QKNEEHSKRMAEMADVISIYRRKEEEAQAEAEQLRQSLRDKEKEITFGKE
KEEQARRTAREQSKAYQEMVRQGEEKYRILQGLKTKEQETREAAETALEA
LRVSINSSITSSPEPAASTLSPFHPSYPSRAIPSPTTTIPHLPASSSSSS
SSSSSSSSSSSSSSSPSSSTTRITALELSLEVERLKVHKATAHERLYLAQ
RYEQELQKLKDEISLRLPLLAAAAVKHAQDAAVLTALAPTPAAAVAVVTK
EKEEEEEEEEDDGPENLFMSPPAPVSPVPRHMLAGGGENYSAALTRRRGR
GPNSSTSRSGNINSGKGTLAMRLLQEWRRESQDLRKEIAELRSAGFYQIP
APCSTSSFSSCPFSSSGSSLPPPFYFTARPILSRATAAAATPSPCPPPDF
GAVVANVIRKGSDRSRSSSVRGVDVEAWRRKYGRPAARN*
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mRNA from alignment at chr5:231859..234078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00710.1 ID=NO05G00710.1|Name=NO05G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at chr5:231859..234078+ (Nannochloropsis oceanica)
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
ACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCGATG
GTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGTCTC
ATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTGCTT
CAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGAGCG
CAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTATCGC
CCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGGAAG
CAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTGGCC
AAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGCGCT
CAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTGAGG
CCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTGCGA
CAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGTTAT
ATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGCAGC
TACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAAGAA
AAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATATCA
GGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGTTGA
AGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAGGCG
TTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGCTGC
ATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCCCTT
CTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTC
ATCCTCAACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAAC
GTCTTAAAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAG
CGTTATGAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATT
GCCGTTGCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTAT
TGACAGCACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTT
ATTCATGTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGG
CAGGAGGGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGG
GGACCCAATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGG
GACATTGGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATT
TGAGGAAGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCA
GCCCCCTGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGG
CTCTTCTTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTA
GAGCCACTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTT
GGCGCTGTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAG
TAGCAGCGTGCGGGGCGTGGACGTGGAGGCCTGGCGTCGCAAATACGGCC
GTCCAGCGGCTCGGAATTGA
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Coding sequence (CDS) from alignment at chr5:231859..234078+

>NO05G00710.1 ID=NO05G00710.1|Name=NO05G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at chr5:231859..234078+ (Nannochloropsis oceanica)
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
ACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCGATG
GTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGTCTC
ATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTGCTT
CAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGAGCG
CAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTATCGC
CCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGGAAG
CAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTGGCC
AAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGCGCT
CAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTGAGG
CCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTGCGA
CAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGTTAT
ATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGCAGC
TACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAAGAA
AAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATATCA
GGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGTTGA
AGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAGGCG
TTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGCTGC
ATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCCCTT
CTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTC
ATCCTCAACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAAC
GTCTTAAAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAG
CGTTATGAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATT
GCCGTTGCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTAT
TGACAGCACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTT
ATTCATGTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGG
CAGGAGGGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGG
GGACCCAATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGG
GACATTGGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATT
TGAGGAAGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCA
GCCCCCTGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGG
CTCTTCTTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTA
GAGCCACTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTT
GGCGCTGTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAG
TAGCAGCGTGCGGGGCGTGGACGTGGAGGCCTGGCGTCGCAAATACGGCC
GTCCAGCGGCTCGGAATTGA
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Synonyms
Publications