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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:203439..205307 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00610.1 vs.
Match: EWM28335.1 (hypothetical protein Naga_100109g4 [Nannochloropsis gaditana]) HSP 1 Score: 396.4 bits (1017), Expect = 1.700e-106 Identity = 259/612 (42.32%), Postives = 354/612 (57.84%), Query Frame = 0
Query: 7 NDEMSAGSSASEMSSVPPEAAPTISSADIGEEVFFLARKELDFGANHAHTALLLADIDDDGQQELIVGSLDGKLAVYKGLERTEPWALATGLGMLRVFATGRVWPWLKAKRQPPQASAMKFTSTAASTKEEACESEAEDVDVPPREHPSQLIAVTVEGDLYVFDFRNAPHS-NLSSPLSTVHSNTVSEQRASQSNMKDNNILQSPSPAQNPPPWKLAPIQTLSVEPNVTAALIVDVDGDGHQELLLGRMDGVVQAFGWRLQPLPPSPGGAEQDEEEEDDDNKEEENDNEEDEYQQNYKYPEPELYEKGTGHVSSSVVSLSTVRFKGPEGSALCVVAGLDTGTVEVLRCHWRGNVDDNAPFSSLVDLGVGGGLPLPHCGWSGPLTCCSLGSGGPSGSRG-GFAVAGLDGRLAMGVVEPPRKRQEQQPPGSDEDLV--WRTEWSLQTPQPFYAIAPFNVSRNDFEKSGFAACAWSGFTCLVTAAGTRSSSDGVSPVNIAVFDPSKMFVPPLRGFVAGCFGEHNEPCLLYSCADGHILVFHDLERQLQQFREVSPDTEDETAGAVRQLRSEEAQRLVKAWVDLYLERSADDTGTETKGDA-SAKNKGIKSDKGAP 614
N ++G+S S SS+ P ++ + +E++ L RKEL FG NHAHTA+ LAD+D DGQQE +VGSLDG LA+YKGL PWA+ATGLGMLRVF+ G++ P + Q P + K S S E+ +++A P R P QL+A+TVEGD+++FDF+N P L+SP ++ R+S + D + A + P L P + +V PNVTAALI+DVDGDG QEL+LG DG +Q GWR S +D +D E +++EKG S+S+VSLS++ C+ GL+ GT+EVLRC D +SLV+L +GGGLPLP GWSGPLTCC+L S +RG FAVAGLDGR+ + VV ++ +DE + W+T WS+QT P Y +AP + D E GFAACAWSG T V + + G V VFDPSKM +PP+RGF+AG FG NEPCL YSCADGHI+VFH+LE+QL++ ++ + + E+E A A R+LR+ E Q LV AWV ++L ++ + G +G+ A+ + KG P
Sbjct: 12 NKAEASGTSPSP-SSLATGFFPGSTNLQV-DEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLS---KHCSEKVSG-EKGGKAQATAGTRPAR--PKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGG-RSSPAQHTDVPVFS----AWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWR------SAWRLTEDAGPDDSRPCSERVPGG----------APVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGD-EGWGFAACAWSGLTYWVLTKASSAGQAGAEKVR--VFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP 591
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00610.1 ID=NO05G00610.1|Name=NO05G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
ATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGTCAAGTGCATC
CGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATCAGCAGCGCCG
ATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCTGGATTTTGGG
GCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTGACGATGACGG
GCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTGGCGGTGTATA
AGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGGACTGGGCATG
CTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGAAGGCCAAAAG
ACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACGGCAGCTTCGA
CCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGATGTGCCCCCA
CGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAGGAGACCTGTA
TGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCGTCACCGTTGT
CCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTCACAATCAAAC
ATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGCAAAATCCGCC
TCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAGCCCAACGTAA
CGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCAAGAATTGCTG
TTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGCGGCTCCAGCC
TCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAGGAGGAGGACG
ACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGAATACCAGCAG
AACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCACTGGCCATGT
GTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAGGGACCGGAAG
GCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCACCGTCGAAGTG
CTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTCCATTTTCGTC
CTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCGCACTGCGGTT
GGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGGGCCTAGTGGT
AGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGTTGGCCATGGG
TGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCCCCTGGGAGCG
ATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGACACCGCAGCCT
TTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATTTTGAGAAATC
CGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTAGTCACCGCCG
CTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAATATCGCAGTG
TTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCTTTGTCGCTGG
GTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGCTGCGCGGATG
GGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCAGCAGTTTCGG
GAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGGTGAGGCAACT
GCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTTGACTTGTACT
TGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGGGGATGCCAGT
GCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTACGGGGGCTGC
TCCTATGAAAGGGAGGTGA back to topprotein sequence of NO05G00610.1 >NO05G00610.1-protein ID=NO05G00610.1-protein|Name=NO05G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MIKPKNNDEMSAGSSASEMSSVPPEAAPTISSADIGEEVFFLARKELDFG
ANHAHTALLLADIDDDGQQELIVGSLDGKLAVYKGLERTEPWALATGLGM
LRVFATGRVWPWLKAKRQPPQASAMKFTSTAASTKEEACESEAEDVDVPP
REHPSQLIAVTVEGDLYVFDFRNAPHSNLSSPLSTVHSNTVSEQRASQSN
MKDNNILQSPSPAQNPPPWKLAPIQTLSVEPNVTAALIVDVDGDGHQELL
LGRMDGVVQAFGWRLQPLPPSPGGAEQDEEEEDDDNKEEENDNEEDEYQQ
NYKYPEPELYEKGTGHVSSSVVSLSTVRFKGPEGSALCVVAGLDTGTVEV
LRCHWRGNVDDNAPFSSLVDLGVGGGLPLPHCGWSGPLTCCSLGSGGPSG
SRGGFAVAGLDGRLAMGVVEPPRKRQEQQPPGSDEDLVWRTEWSLQTPQP
FYAIAPFNVSRNDFEKSGFAACAWSGFTCLVTAAGTRSSSDGVSPVNIAV
FDPSKMFVPPLRGFVAGCFGEHNEPCLLYSCADGHILVFHDLERQLQQFR
EVSPDTEDETAGAVRQLRSEEAQRLVKAWVDLYLERSADDTGTETKGDAS
AKNKGIKSDKGAPTGAAPMKGR* back to topmRNA from alignment at chr5:203439..205307- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00610.1 ID=NO05G00610.1|Name=NO05G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at chr5:203439..205307- (Nannochloropsis oceanica)
ATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGTCAAGTGCATC
CGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATCAGCAGCGCCG
ATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCTGGATTTTGGG
GCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTGACGATGACGG
GCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTGGCGGTGTATA
AGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGGACTGGGCATG
CTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGAAGGCCAAAAG
ACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACGGCAGCTTCGA
CCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGATGTGCCCCCA
CGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAGGAGACCTGTA
TGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCGTCACCGTTGT
CCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTCACAATCAAAC
ATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGCAAAATCCGCC
TCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAGCCCAACGTAA
CGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCAAGAATTGCTG
TTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGCGGCTCCAGCC
TCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAGGAGGAGGACG
ACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGAATACCAGCAG
AACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCACTGGCCATGT
GTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAGGGACCGGAAG
GCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCACCGTCGAAGTG
CTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTCCATTTTCGTC
CTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCGCACTGCGGTT
GGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGGGCCTAGTGGT
AGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGTTGGCCATGGG
TGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCCCCTGGGAGCG
ATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGACACCGCAGCCT
TTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATTTTGAGAAATC
CGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTAGTCACCGCCG
CTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAATATCGCAGTG
TTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCTTTGTCGCTGG
GTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGCTGCGCGGATG
GGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCAGCAGTTTCGG
GAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGGTGAGGCAACT
GCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTTGACTTGTACT
TGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGGGGATGCCAGT
GCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTACGGGGGCTGC
TCCTATGAAAGGGAGGTGA back to topCoding sequence (CDS) from alignment at chr5:203439..205307- >NO05G00610.1 ID=NO05G00610.1|Name=NO05G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr5:203439..205307- (Nannochloropsis oceanica)
ATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGTCAAGTGCATC
CGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATCAGCAGCGCCG
ATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCTGGATTTTGGG
GCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTGACGATGACGG
GCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTGGCGGTGTATA
AGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGGACTGGGCATG
CTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGAAGGCCAAAAG
ACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACGGCAGCTTCGA
CCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGATGTGCCCCCA
CGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAGGAGACCTGTA
TGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCGTCACCGTTGT
CCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTCACAATCAAAC
ATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGCAAAATCCGCC
TCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAGCCCAACGTAA
CGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCAAGAATTGCTG
TTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGCGGCTCCAGCC
TCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAGGAGGAGGACG
ACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGAATACCAGCAG
AACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCACTGGCCATGT
GTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAGGGACCGGAAG
GCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCACCGTCGAAGTG
CTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTCCATTTTCGTC
CTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCGCACTGCGGTT
GGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGGGCCTAGTGGT
AGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGTTGGCCATGGG
TGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCCCCTGGGAGCG
ATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGACACCGCAGCCT
TTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATTTTGAGAAATC
CGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTAGTCACCGCCG
CTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAATATCGCAGTG
TTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCTTTGTCGCTGG
GTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGCTGCGCGGATG
GGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCAGCAGTTTCGG
GAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGGTGAGGCAACT
GCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTTGACTTGTACT
TGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGGGGATGCCAGT
GCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTACGGGGGCTGC
TCCTATGAAAGGGAGGTGA back to top
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