NO05G00600.1, NO05G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00600.1
Unique NameNO05G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1434
Alignment locationchr5:201132..203144 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:201132..203144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00600.1 vs.
Match: EWM28330.1 (homogentisate -dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 743.8 bits (1919), Expect = 3.300e-211
Identity = 355/468 (75.85%), Postives = 400/468 (85.47%), Query Frame = 0 
Query:   11 SSSSSSSSSGSTISVQLHTLKSVASRPPLQYQSGFGNHFETEAIPGALPQGQNTPQVCPLGLYAEQLSGTAFTVPREHNQRTWLYRIKPSVVQSRFTSLAPSDPPLGLLNKANIVTPAMLRWGPLP--MPATEKS--------VDFVQGLICMMGAGDPSVKKGLSVLMYAANASMEDSAFQNSDGDFLVVPQIGTLHLRTEMGLLTVSPHEIVVVPRGIRFQVELEGPSRGYVLEVYENHFQLPQLGPLGANGLANPRDFRYPVAAYEDIQRPYQLINKFSGQLFEATLPASPFNVVAWHGNYAPFKYNLDDFCAAGSVTYDHLDPSIFTVLTCPSSVSGVAVADVVVFPPRWMVMDHTFRPPYYHRNVMNEFMGMIHGKYDAKEGFLPGGSSLHSCMSPHGPDLTTFEKATNETLGPVKFDGGLAFMFETCYSLNMTEWALQAPHLESDY-ERCWANLPKLFVGPE 468
            +SSSSS    +T  V L + +   +RP LQYQSGFGNHF TEAIP ALP+GQNTPQ CP GLYAEQLSGTAFTVPREHNQR+WLYRI+PSVVQSRF  +A S   LGLLNK  + TPAMLRW PLP  MPA++ +        VDFV GL+CMMGAGDP  K+GL+V MYAA+ SM D AFQNSDGDFLVVPQ+GTLH+RTEMG+L V P EIVV+PRGI+FQ++++ PSRGYVLEV+E HFQLPQLGPLGANGLANPRDF+YPVAA++D++RP++L NKF G+LFEATLPASPFNVVAWHGNYAPFKYNLDDFC  GSVTYDHLDPSIFTVLTCPS+V GVAVAD VVFPPRWMVM+HTFRPPYYHRNVM+E+MGMI+GKYDAKEGFLPGG+SLHSCMSPHGPDL TFEKAT E L PVKF+GGLAFMFETCY L +TEWA+ APHLE DY ERCWA LPK FV P+
Sbjct:    2 TSSSSSLMEETTKKVPLSS-EIKRTRPALQYQSGFGNHFSTEAIPNALPEGQNTPQTCPYGLYAEQLSGTAFTVPREHNQRSWLYRIRPSVVQSRFIPVASSLSRLGLLNKPEVTTPAMLRWRPLPLPMPASDPNAPTTAGSGVDFVDGLVCMMGAGDPGSKQGLNVFMYAADTSMVDVAFQNSDGDFLVVPQMGTLHIRTEMGILEVEPREIVVLPRGIKFQIDVDAPSRGYVLEVFEGHFQLPQLGPLGANGLANPRDFKYPVAAFQDLERPFRLFNKFGGELFEATLPASPFNVVAWHGNYAPFKYNLDDFCCVGSVTYDHLDPSIFTVLTCPSAVPGVAVADFVVFPPRWMVMEHTFRPPYYHRNVMSEYMGMIYGKYDAKEGFLPGGASLHSCMSPHGPDLATFEKATTEALAPVKFEGGLAFMFETCYVLKLTEWAVNAPHLEEDYEERCWARLPKKFVAPQ 468
The following BLAST results are available for this feature:
BLAST of NO05G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28330.13.300e-21175.85homogentisate -dioxygenase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00600NO05G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00600.1NO05G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00600.1.cds1NO05G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00600.1.cds2NO05G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00600.1.cds3NO05G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00600.1.cds4NO05G00600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00600.1.cds5NO05G00600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00600.1 ID=NO05G00600.1|Name=NO05G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTC
CTCTTCTGGCAGCACGATCAGCGTCCAACTCCACACACTAAAAAGCGTCG
CCAGTCGCCCTCCCTTGCAGTACCAGTCCGGGTTTGGCAACCACTTTGAA
ACCGAGGCCATCCCGGGTGCCTTGCCGCAAGGTCAAAATACGCCGCAGGT
CTGCCCACTCGGCCTCTACGCCGAGCAGCTTTCGGGCACGGCCTTCACAG
TCCCACGCGAGCACAATCAACGCACATGGCTTTATCGCATAAAGCCTTCG
GTGGTCCAGTCCCGCTTCACATCACTTGCGCCCTCAGACCCTCCTTTGGG
GCTTTTGAACAAAGCTAATATCGTGACTCCTGCGATGCTCCGCTGGGGAC
CCCTCCCCATGCCGGCTACGGAGAAGAGTGTGGACTTTGTCCAAGGGTTG
ATATGCATGATGGGCGCGGGCGATCCGAGCGTGAAAAAAGGCTTGAGCGT
GCTGATGTATGCAGCAAACGCGTCGATGGAGGACTCGGCGTTTCAGAATT
CGGACGGCGATTTCTTGGTCGTGCCGCAGATTGGCACGCTGCACTTGCGC
ACAGAGATGGGTCTCCTGACGGTTTCACCGCATGAGATTGTAGTCGTGCC
TCGGGGCATCCGCTTTCAGGTCGAGTTGGAAGGCCCTTCCCGTGGCTATG
TCCTCGAGGTGTACGAGAATCACTTTCAGCTCCCACAACTAGGCCCGCTT
GGTGCCAACGGTCTCGCGAATCCACGCGACTTCAGGTACCCCGTCGCCGC
GTACGAGGACATTCAACGTCCTTACCAGCTGATCAACAAGTTTTCCGGCC
AACTCTTTGAGGCGACGCTACCGGCCTCTCCCTTCAATGTTGTGGCTTGG
CATGGGAACTACGCGCCCTTTAAATACAACCTAGATGACTTCTGTGCGGC
AGGCTCGGTGACGTACGATCATTTGGATCCCTCCATCTTTACAGTTTTAA
CCTGCCCCTCCTCCGTCTCCGGCGTGGCCGTCGCAGACGTGGTCGTCTTT
CCCCCGCGCTGGATGGTGATGGATCACACCTTTCGCCCTCCTTACTACCA
TCGCAATGTTATGAACGAGTTTATGGGTATGATCCATGGCAAGTATGATG
CGAAAGAAGGTTTCCTTCCCGGTGGCTCCTCCCTCCATTCCTGCATGTCT
CCTCATGGACCTGACCTTACCACCTTCGAGAAAGCGACCAACGAGACGCT
TGGCCCTGTTAAGTTTGACGGAGGTCTTGCGTTTATGTTTGAAACATGCT
ATAGCTTGAACATGACAGAATGGGCGTTACAGGCGCCGCACCTGGAGAGC
GACTACGAAAGGTGCTGGGCAAACCTTCCCAAGTTGTTTGTGGGGCCGGA
AGGGAAGTGGGAAGGTGGAAGGGAAGAAAGCTGA
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protein sequence of NO05G00600.1

>NO05G00600.1-protein ID=NO05G00600.1-protein|Name=NO05G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MASSSSSSSSSSSSSSSSSGSTISVQLHTLKSVASRPPLQYQSGFGNHFE
TEAIPGALPQGQNTPQVCPLGLYAEQLSGTAFTVPREHNQRTWLYRIKPS
VVQSRFTSLAPSDPPLGLLNKANIVTPAMLRWGPLPMPATEKSVDFVQGL
ICMMGAGDPSVKKGLSVLMYAANASMEDSAFQNSDGDFLVVPQIGTLHLR
TEMGLLTVSPHEIVVVPRGIRFQVELEGPSRGYVLEVYENHFQLPQLGPL
GANGLANPRDFRYPVAAYEDIQRPYQLINKFSGQLFEATLPASPFNVVAW
HGNYAPFKYNLDDFCAAGSVTYDHLDPSIFTVLTCPSSVSGVAVADVVVF
PPRWMVMDHTFRPPYYHRNVMNEFMGMIHGKYDAKEGFLPGGSSLHSCMS
PHGPDLTTFEKATNETLGPVKFDGGLAFMFETCYSLNMTEWALQAPHLES
DYERCWANLPKLFVGPEGKWEGGREES*
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mRNA from alignment at chr5:201132..203144+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00600.1 ID=NO05G00600.1|Name=NO05G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp|location=Sequence derived from alignment at chr5:201132..203144+ (Nannochloropsis oceanica)
ATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTC
CTCTTCTGGCAGCACGATCAGCGTCCAACTCCACACACTAAAAAGCGTCG
CCAGTCGCCCTCCCTTGCAGTACCAGTCCGGGTTTGGCAACCACTTTGAA
ACCGAGGCCATCCCGGGTGCCTTGCCGCAAGGTCAAAATACGCCGCAGGT
CTGCCCACTCGGTACGTCCCATGTTCGTCCCTAGGCGCCCATCCATCCCT
CTACCCTCTATTTACCTACACTAGTCAGGCATTTATGGAGAAATCTGATA
CTTGTCGCGTGTCGTCTTCTCGTTCATCTTGTTCTCGTTCTGTCCCTCCA
CTCTGTCTTTCCTCCCGCTCTCCTCTCTCTAGGCCTCTACGCCGAGCAGC
TTTCGGGCACGGCCTTCACAGTCCCACGCGAGCACAATCAACGCACATGG
CTTTATCGCATAAAGCCTTCGGTGGTCCAGTCCCGCTTCACATCACTTGC
GCCCTCAGACCCTCCTTTGGGGCTTTTGAACAAAGCTAATATCGTGACTC
CTGCGATGCTCCGCTGGGGACCCCTCCCCATGCCGGCTACGGAGAAGAGT
GTGGACTTTGTCCAAGGGTTGATATGCATGATGGGCGCGGGCGATCCGAG
CGTGAAAAAAGGCTTGAGCGTGCTGATGTATGCAGCAAACGCGTCGATGG
AGGACTCGGCGTTTCAGAATTCGGACGGCGATTTCTTGGTCGTGCCGCAG
ATTGGGTAAGTGAGGGGATAAGGAAGGCAGGGCGCTTGGCAGGATGGTTT
TCACTGTGAGTTCAAGACGAAGAGGTGAACCGAAGTATGCTCTCTCACGC
ACACACAATATTGATAGCACGCTGCACTTGCGCACAGAGATGGGTCTCCT
GACGGTTTCACCGCATGAGATTGTAGTCGTGCCTCGGGGCATCCGCTTTC
AGGTCGAGTTGGAAGGCCCTTCCCGTGGCTATGTCCTCGAGGTGTACGAG
AATCACTTTCAGGTATAGAATTTGTCAGACAGGGAGTGGTACCTATTTTA
TGTTCCACACATCAATCGTGTTCTACGTTCCGCACGCAATCTCCTTGTAC
GCCCTCGACGAAACACAGCTCCCACAACTAGGCCCGCTTGGTGCCAACGG
TCTCGCGAATCCACGCGACTTCAGGTACCCCGTCGCCGCGTACGAGGACA
TTCAACGTCCTTACCAGCTGATCAACAAGTTTTCCGGCCAACTCTTTGAG
GCGACGCTACCGGCCTCTCCCTTCAATGTTGTGGCTTGGCATGGGAACTA
CGCGCCCTTTAAATACAACCTAGATGACTTCTGTGCGGCAGGCTCGGTGA
CGTACGATCATTTGGTAAGATTCGAAAGGGAGGAGGAGGGGATCACTAGT
GAATAAATGAGGTACAGGTTGGTTCCACACACAGAAGTCATATCTCACCA
TGCGCGTGCATTCGCATACATTTTGCCAATGTCTTCCGTCTTAGCTACTC
ACGCATAATTTTTCCTGAACTTCCTTCGCATTCAAATATTTAAACACCCG
CCAGGATCCCTCCATCTTTACAGTTTTAACCTGCCCCTCCTCCGTCTCCG
GCGTGGCCGTCGCAGACGTGGTCGTCTTTCCCCCGCGCTGGATGGTGATG
GATCACACCTTTCGCCCTCCTTACTACCATCGCAATGTTATGAACGAGTT
TATGGGTATGATCCATGGCAAGTATGATGCGAAAGAAGGTTTCCTTCCCG
GTGGCTCCTCCCTCCATTCCTGCATGTCTCCTCATGGACCTGACCTTACC
ACCTTCGAGAAAGCGACCAACGAGACGCTTGGCCCTGTTAAGTTTGACGG
AGGTCTTGCGTTTATGTTTGAAACATGCTATAGCTTGAACATGACAGAAT
GGGCGTTACAGGCGCCGCACCTGGAGAGCGACTACGAAAGGTGCTGGGCA
AACCTTCCCAAGTTGTTTGTGGGGCCGGAAGGGAAGTGGGAAGGTGGAAG
GGAAGAAAGCTGA
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Coding sequence (CDS) from alignment at chr5:201132..203144+

>NO05G00600.1 ID=NO05G00600.1|Name=NO05G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr5:201132..203144+ (Nannochloropsis oceanica)
ATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTC
CTCTTCTGGCAGCACGATCAGCGTCCAACTCCACACACTAAAAAGCGTCG
CCAGTCGCCCTCCCTTGCAGTACCAGTCCGGGTTTGGCAACCACTTTGAA
ACCGAGGCCATCCCGGGTGCCTTGCCGCAAGGTCAAAATACGCCGCAGGT
CTGCCCACTCGGCCTCTACGCCGAGCAGCTTTCGGGCACGGCCTTCACAG
TCCCACGCGAGCACAATCAACGCACATGGCTTTATCGCATAAAGCCTTCG
GTGGTCCAGTCCCGCTTCACATCACTTGCGCCCTCAGACCCTCCTTTGGG
GCTTTTGAACAAAGCTAATATCGTGACTCCTGCGATGCTCCGCTGGGGAC
CCCTCCCCATGCCGGCTACGGAGAAGAGTGTGGACTTTGTCCAAGGGTTG
ATATGCATGATGGGCGCGGGCGATCCGAGCGTGAAAAAAGGCTTGAGCGT
GCTGATGTATGCAGCAAACGCGTCGATGGAGGACTCGGCGTTTCAGAATT
CGGACGGCGATTTCTTGGTCGTGCCGCAGATTGGCACGCTGCACTTGCGC
ACAGAGATGGGTCTCCTGACGGTTTCACCGCATGAGATTGTAGTCGTGCC
TCGGGGCATCCGCTTTCAGGTCGAGTTGGAAGGCCCTTCCCGTGGCTATG
TCCTCGAGGTGTACGAGAATCACTTTCAGCTCCCACAACTAGGCCCGCTT
GGTGCCAACGGTCTCGCGAATCCACGCGACTTCAGGTACCCCGTCGCCGC
GTACGAGGACATTCAACGTCCTTACCAGCTGATCAACAAGTTTTCCGGCC
AACTCTTTGAGGCGACGCTACCGGCCTCTCCCTTCAATGTTGTGGCTTGG
CATGGGAACTACGCGCCCTTTAAATACAACCTAGATGACTTCTGTGCGGC
AGGCTCGGTGACGTACGATCATTTGGATCCCTCCATCTTTACAGTTTTAA
CCTGCCCCTCCTCCGTCTCCGGCGTGGCCGTCGCAGACGTGGTCGTCTTT
CCCCCGCGCTGGATGGTGATGGATCACACCTTTCGCCCTCCTTACTACCA
TCGCAATGTTATGAACGAGTTTATGGGTATGATCCATGGCAAGTATGATG
CGAAAGAAGGTTTCCTTCCCGGTGGCTCCTCCCTCCATTCCTGCATGTCT
CCTCATGGACCTGACCTTACCACCTTCGAGAAAGCGACCAACGAGACGCT
TGGCCCTGTTAAGTTTGACGGAGGTCTTGCGTTTATGTTTGAAACATGCT
ATAGCTTGAACATGACAGAATGGGCGTTACAGGCGCCGCACCTGGAGAGC
GACTACGAAAGGTGCTGGGCAAACCTTCCCAAGTTGTTTGTGGGGCCGGA
AGGGAAGTGGGAAGGTGGAAGGGAAGAAAGCTGA
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Synonyms
Publications