NO05G00560.1, NO05G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00560.1
Unique NameNO05G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1355
Alignment locationchr5:193002..194768 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:193002..194768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00560.1 vs.
Match: EWM28332.1 (MtN3-like protein [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 2.600e-82
Identity = 167/256 (65.23%), Postives = 195/256 (76.17%), Query Frame = 0 
Query:    1 MGGLATLQTLATLTAVTLNVCPIFDEIPAIKRSRTTGDRSPLLFVAIWSNACLWIFYGIHTHAVHPIATTNITGFLSGSYFLSVFHSYAPPLAKVRLARAFTLAASLITLIGVYAFIFPSSSPSKTQHKLGAMCCLVTISVYAAPLSSVARALQLQSSKPISLFFALVGTLNAVLWSGYGLLTNDAWVYAPSVIGTILSVSQAAVFFWFEVVMKRGGKEGGR----EGGAGKRPTLSEYLMLGTEEGGKEGAAALL 253
            MG L  LQT A+LTAV LN+CPIFDEIPAIKRSR+TGDRSPLLFVAIW+NACLW+FYG+   A+HPIATTN TGFLSGSYFL  F++YA P+AK R A+ F LA S +     Y F FPS   S+TQ  LGA+C LVTI+VYAAPLS+V RAL+L+S KPISLFFALVGTLN+VLW  YG+LT DAWVY PSV+G  + ++QAAVFFWF V   RGG EGG+    EG  GK   L ++L L   +GGKE  AALL
Sbjct:    1 MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAV--GRGGLEGGKESRGEGFGGK--ALFDFLSL-QGDGGKEMQAALL 251
The following BLAST results are available for this feature:
BLAST of NO05G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28332.12.600e-8265.23MtN3-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00560NO05G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00560.1NO05G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00560.1.cds1NO05G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00560.1.cds2NO05G00560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00560.1 ID=NO05G00560.1|Name=NO05G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp
CAGGCCCTCTCCAAGTCCTACCATCATCATCATCCACCATGGGCGGCCTT
GCCACCCTTCAAACCCTGGCGACCTTGACAGCGGTCACCCTCAATGTCTG
CCCCATCTTTGACGAAATCCCCGCGATTAAACGCTCTCGCACCACAGGGG
ACCGTTCGCCTCTCCTCTTCGTCGCTATCTGGAGCAACGCCTGCCTATGG
ATCTTCTACGGCATACACACTCATGCCGTCCACCCAATTGCTACCACCAA
CATTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTGTTTTCCACTCCT
ATGCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCCTTCACACTGGCC
GCCTCCCTAATCACCTTAATTGGAGTATATGCCTTCATTTTCCCTTCCTC
CTCCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGTGTTGTCTTGTGA
CCATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCGCGGGCCTTACAG
CTCCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATTGGTCGGCACGTT
AAACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAAATGATGCGTGGG
TGTACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTGTCTCAAGCAGCT
GTGTTCTTTTGGTTTGAAGTCGTTATGAAGAGGGGAGGGAAGGAGGGAGG
GAGGGAGGGAGGAGCAGGGAAGAGGCCGACTCTGTCGGAGTATTTAATGC
TGGGAACCGAGGAGGGAGGGAAAGAGGGGGCGGCAGCGCTCCTATGAAAT
GAGGTGGGAGGAGGAGAGGAGGGATGGAGGATGATGGTGGACGAGGAGGA
GAAGGAAGAGGAGGAGGAAGAGGGCATGATTGCGGAAAGCAGGTTTGGAG
GAGGAGGAGTGAATGAAGGAGAGAAAGCGTGGTGGAAGAGGGGAGACAAT
GCTGTAGAATACGGGGAGAAAATCGAGAGGGAGAGAAAATGTGAGATGAC
CAAGGAGGAGGAGAAGGGAAAGCAGGGGGAAGAAGAAAGAAAGGATGTCT
CGTGGTTGTTGTAGAGTAAATTGAGAGAAGCTTGGGAAAAGTCAAAAGAA
ATAAACTTAGGACTGGAATTTGAATGAAGATATAATGACTCTTGATGCCC
AATATGAGCACTCTGAGGAGTGGAGGGGGACATGAAGGAGATATAAAGCA
GGTGGGAGATACCAAAGCTGAAGAAAGGAGGCATGTGTGAGTGCATAAAT
TTACATGTCAGCCTGTCCGCCTGACGGAATTACGGCTGGTGAAGAGAAGG
AGAAAAAGAAGCCCCCTCCCCCTCCCCCTGCAAAAAATAAAAATAGACAT
CCAAC
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protein sequence of NO05G00560.1

>NO05G00560.1-protein ID=NO05G00560.1-protein|Name=NO05G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MGGLATLQTLATLTAVTLNVCPIFDEIPAIKRSRTTGDRSPLLFVAIWSN
ACLWIFYGIHTHAVHPIATTNITGFLSGSYFLSVFHSYAPPLAKVRLARA
FTLAASLITLIGVYAFIFPSSSPSKTQHKLGAMCCLVTISVYAAPLSSVA
RALQLQSSKPISLFFALVGTLNAVLWSGYGLLTNDAWVYAPSVIGTILSV
SQAAVFFWFEVVMKRGGKEGGREGGAGKRPTLSEYLMLGTEEGGKEGAAA
LL*
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mRNA from alignment at chr5:193002..194768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00560.1 ID=NO05G00560.1|Name=NO05G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp|location=Sequence derived from alignment at chr5:193002..194768- (Nannochloropsis oceanica)
CAGGCCCTCTCCAAGTCCTACCATCATCATCATCCACCATGGGCGGCCTT
GCCACCCTTCAAACCCTGGCGACCTTGACAGCGGTCACCCTCAATGTCTG
CCCCATCTTTGACGAAATCCCCGGTACGTGCTTTTGCCCATATCTGTGGA
ACGGTGTTTGTGGCTATGCTGATGTCGTGGGTTGGGTTTTTAGAAGGAAA
AGGCCCATGATTGTGCAGAAAGGGAGCAAGCCGTTGCCCCCTCTCTCCCT
CCCTGCCTCTTTCCCCCACAATGTCACGCCTCATAAAGCTGATAAGAGAG
ACGAGACAGAAGAATGGCGGGTGGGAAAGAGAAGTGGGAAGGAGGTTGCA
GGCTTGTCATTTACGGGTCACGGCATCCTTGGGTGGTACGCACACAGCTC
CCTAGCCTCCTGCCAGACTCCCTAAGCATACACCTCTACCCCACTTAAAC
AAGCCGAACGAAAGGCAGGGCTTAAGGGTCTTACAACGTCTTCATCCACA
TCTTCCTTCCCTTCCTCCCTCCCCTTTCCAACTAGCGATTAAACGCTCTC
GCACCACAGGGGACCGTTCGCCTCTCCTCTTCGTCGCTATCTGGAGCAAC
GCCTGCCTATGGATCTTCTACGGCATACACACTCATGCCGTCCACCCAAT
TGCTACCACCAACATTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTG
TTTTCCACTCCTATGCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCC
TTCACACTGGCCGCCTCCCTAATCACCTTAATTGGAGTATATGCCTTCAT
TTTCCCTTCCTCCTCCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGT
GTTGTCTTGTGACCATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCG
CGGGCCTTACAGCTCCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATT
GGTCGGCACGTTAAACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAA
ATGATGCGTGGGTGTACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTG
TCTCAAGCAGCTGTGTTCTTTTGGTTTGAAGTCGTTATGAAGAGGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGAGCAGGGAAGAGGCCGACTCTGTCGG
AGTATTTAATGCTGGGAACCGAGGAGGGAGGGAAAGAGGGGGCGGCAGCG
CTCCTATGAAATGAGGTGGGAGGAGGAGAGGAGGGATGGAGGATGATGGT
GGACGAGGAGGAGAAGGAAGAGGAGGAGGAAGAGGGCATGATTGCGGAAA
GCAGGTTTGGAGGAGGAGGAGTGAATGAAGGAGAGAAAGCGTGGTGGAAG
AGGGGAGACAATGCTGTAGAATACGGGGAGAAAATCGAGAGGGAGAGAAA
ATGTGAGATGACCAAGGAGGAGGAGAAGGGAAAGCAGGGGGAAGAAGAAA
GAAAGGATGTCTCGTGGTTGTTGTAGAGTAAATTGAGAGAAGCTTGGGAA
AAGTCAAAAGAAATAAACTTAGGACTGGAATTTGAATGAAGATATAATGA
CTCTTGATGCCCAATATGAGCACTCTGAGGAGTGGAGGGGGACATGAAGG
AGATATAAAGCAGGTGGGAGATACCAAAGCTGAAGAAAGGAGGCATGTGT
GAGTGCATAAATTTACATGTCAGCCTGTCCGCCTGACGGAATTACGGCTG
GTGAAGAGAAGGAGAAAAAGAAGCCCCCTCCCCCTCCCCCTGCAAAAAAT
AAAAATAGACATCCAAC
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Coding sequence (CDS) from alignment at chr5:193002..194768-

>NO05G00560.1 ID=NO05G00560.1|Name=NO05G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr5:193002..194768- (Nannochloropsis oceanica)
ATGGGCGGCCTTGCCACCCTTCAAACCCTGGCGACCTTGACAGCGGTCAC
CCTCAATGTCTGCCCCATCTTTGACGAAATCCCCGCGATTAAACGCTCTC
GCACCACAGGGGACCGTTCGCCTCTCCTCTTCGTCGCTATCTGGAGCAAC
GCCTGCCTATGGATCTTCTACGGCATACACACTCATGCCGTCCACCCAAT
TGCTACCACCAACATTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTG
TTTTCCACTCCTATGCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCC
TTCACACTGGCCGCCTCCCTAATCACCTTAATTGGAGTATATGCCTTCAT
TTTCCCTTCCTCCTCCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGT
GTTGTCTTGTGACCATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCG
CGGGCCTTACAGCTCCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATT
GGTCGGCACGTTAAACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAA
ATGATGCGTGGGTGTACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTG
TCTCAAGCAGCTGTGTTCTTTTGGTTTGAAGTCGTTATGAAGAGGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGAGCAGGGAAGAGGCCGACTCTGTCGG
AGTATTTAATGCTGGGAACCGAGGAGGGAGGGAAAGAGGGGGCGGCAGCG
CTCCTATGA
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Synonyms
Publications