NO05G00460.1, NO05G00460.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00460.1
Unique Name	NO05G00460.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3196
Alignment location	chr5:167302..173004 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:167302..173004 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G00460.1 vs.
Match: XP_002907753.1 (ribosome biogenesis protein BMS1 [Phytophthora infestans T30-4]; EEY64317.1 ribosome biogenesis protein BMS1 [Phytophthora infestans T30-4])

HSP 1 Score: 783.1 bits (2021), Expect = 1.000e-222
Identity = 513/1064 (48.21%), Postives = 663/1064 (62.31%), Query Frame = 0

Query:   12 KGHRPRQAGAKAKKK-----EIHQKKKKGLSTDRHNPRAFSVANIKRTQRNTQRNLDRQQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKTTLIRSLVKYYTGQNLSDVLGPITVVAGKSKRITLFECPSDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALNKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMKYRPLTWRNTHPYVLVDRFEDITRPEVLAATPQAERDLVLYGFVRGAHLKPSMKVHVIGAGDYDMQTVDALPDPCPLPE-KEGSRSSLKTK-----DTLLYAPMANVGAVRYDADAMYINLRHLHYTKPDALDPAARAAAAAAVASGEGEEGSEEEEEESSSEEEGEEGKKGGVGRKRAPAELVRRLQDVSHGLDEKLEGAGMRLFAGGELLKGGGEEEEEEE---EEEEEEDEEDEEEDEE------------------------EEEENGGALGDNYDDDDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGGRSTRWKDGLSRRAADAYLEREKGVSALNLMELVYGKGGKGGGRGEEEEEEEEEEED--------------FFRPRRSDTKKDEFGCP------LDGLDSSRLTLGAVKEVDWT-EDGEEGALAELKRRRFVTGGW------------GEGEEEGGEKD----DDGEVFGDFEDLETGQRFGRRAGDEEEGTDEELEARQDAELARLAKKVSLKEKFNAEFDSGKIHQSSGVMDSEGVGEGMRGGKKVGRKSRKEVEEEDAALDEEERQALLLAAKLKEDQKARNQAEFEEDGYVQRLKFEGFRQGLYVRISLKGVSAEFSKHFRPSVPVVVGGLLPHETAMGLVRCRVKKHRWHRKILKANDPVIFSLGWRRFQSVPIFSTEDQNERQRYLKYTPEHMHCFATFYGPLCPPNTGLLAFQSLSSSIPGFRVALTGIVLELDSSFHVAKKLKLIGTPCKIFKNTAFISGMFNSDLEVAKFEGAKIRTVSGVRGQIKKAAGPGGREGGGRAPF 1001
            KGHR  ++GAK  K+     E  +K++  L+  R NP+AF VA   R ++  QRNLDR  +KE+VP  +R E LPPP  VVVMGP G GK+T+IRSLVK YT  NL +V GP+TVV+GK +RIT FECP+D L AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ  GFPKVMG+++HLDG K NK+L KTKKRLK RFWTEIYQGAK+FY SG+  +KY KGEI+N++LYISRMK+RPLTWRN+H Y+L DRFED+T P+ +   P  +R + LYG++RG HLKP MK+H+ GAGD+ M +V A+PDPC +P  K+G+  S+K K     DTLLYAPM++VG + YD DAMYINL  L+YT PD  D                     +E++    E  G+ G + G+G +    E+V+ +Q +  GLDE+L+GA + LF     ++    + +EEE   + +EEE+ ED++ D E                        EE E     GDN DDD ++E EEE+E+EEEEEE  EE+ +             RWK+ +  RAA  +LERE+G   +NLMELVYG+  K      + E EEE ++D              FF  +R      E          ++ +D SRL LG     DWT  D  EG      R RFVTG W             E EEE GE +    +D ++ G FEDLETG+    +  D ++G+DE      D  +         +E+  A+  + +      V D + V  G       G+K  K+ E      DEE  + ++ A +L+E+Q  RN  EF E+G   RL+ EGFR GLYVRI   GV AEF +++ P  P+VVGGL   E  +GLVR R KKHRWH+KILK NDP++FS+GWRRFQS+P++S ED NER RYLKYTPEHMHC AT +GP+CPPNTG+LAFQ+LS++  GFRV+ TG+VLELD  F+V KKLKLIGTP KI KNTAFI GMFN++LEVAKFEGA +RTVSGVRG+IKKA    G +G  RA F
Sbjct:    8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAEQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQSNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECPND-LNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDGFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIQNLSLYISRMKFRPLTWRNSHAYMLADRFEDVTAPDEVQRNPAVDRRVTLYGYLRGTHLKPGMKMHIAGAGDFFMDSVTAMPDPCNVPSSKKGADGSVKKKHLTQKDTLLYAPMSDVGNIMYDKDAMYINLSQLNYTNPDTGDVVP------------------DEQDAEDDESAGKSGMRIGLGGEGV--EMVQSMQKMDVGLDERLKGASLSLFKNTAAIRADEVDSDEEEGSSDSDEEEEGEDDDSDGEPNVGKPKEAIVRDGSGRMRRRAVFEESEENVETGDNSDDDSDDESEEEDEDEEEEEEVTEEQSQ------------LRWKENMVSRAAANFLEREQG--DVNLMELVYGERQKLHMTERDLENEEEAKKDKRTKKADDDDDDDSFFTLKRKSNSVGESSSASEKYNTINAMDCSRLHLGTDGMSDWTMPDVLEGI-----RNRFVTGSWKREKKKSDEDNDDEDEEEAGEDNADPMNDDDMDGSFEDLETGEV--HKGVDSDDGSDEVNTEETDEHI---------RERLRAQKSAKRT-----VEDDDDVEVG-------GQKKNKDEE------DEEMMEVMVEAKRLREEQAQRNAEEFGEEGEDMRLQLEGFRNGLYVRIEFSGVPAEFVRYYDPKNPIVVGGLPNMEDTLGLVRMRFKKHRWHKKILKTNDPLVFSIGWRRFQSLPLYSIEDTNERHRYLKYTPEHMHCHATIFGPMCPPNTGVLAFQTLSNNAEGFRVSGTGVVLELDHKFNVVKKLKLIGTPNKIHKNTAFIKGMFNTELEVAKFEGASVRTVSGVRGRIKKAL--RGEKGDFRATF 1000

The following BLAST results are available for this feature:

BLAST of NO05G00460.1 vs.

BLAST of NO05G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002907753.1	1.000e-222	48.21	ribosome biogenesis protein BMS1 [Phytophthora inf...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00460	NO05G00460	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00460.1	NO05G00460.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00460.1.cds1	NO05G00460.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds2	NO05G00460.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds3	NO05G00460.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds4	NO05G00460.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds5	NO05G00460.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds6	NO05G00460.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds7	NO05G00460.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds8	NO05G00460.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds9	NO05G00460.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds10	NO05G00460.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds11	NO05G00460.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds12	NO05G00460.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds13	NO05G00460.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds14	NO05G00460.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds15	NO05G00460.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds16	NO05G00460.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00460.1.cds17	NO05G00460.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:167302..173004-
coding sequence from alignment at chr5:167302..173004-

mRNA sequence

>NO05G00460.1 ID=NO05G00460.1|Name=NO05G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=3196bp
ACAGGGCTGTCAAGAAAAACTCAACAGCAGTCATGGGTGACTCCGGGCTT
GTGCAGGACGTGCACAAGGGCCACCGGCCCCGGCAGGCGGGTGCCAAGGC
AAAAAAGAAGGAGATACATCAGAAGAAGAAGAAGGGCCTGTCCACAGACC
GACATAACCCCAGGGCGTTTTCAGTGGCCAATATCAAACGGACGCAACGT
AACACTCAGCGGAACTTGGACAGACAGCAACAGAAGGAGCATGTCCCGCT
TGTCGACCGCACTGAGGCCTTGCCTCCCCCCTCTCTAGTGGTGGTGATGG
GTCCCAAGGGCTGCGGAAAAACCACGCTCATCCGCTCTCTAGTCAAATAC
TACACTGGCCAGAACTTGTCCGATGTCCTGGGCCCGATCACCGTCGTGGC
GGGGAAGAGCAAACGCATCACCCTCTTCGAATGTCCTTCCGACGACCTCT
GTGCTATGCTTGACCTGGCCAAAACAGCAGACCTAGTGCTACTCATGGTG
GACGGTTCTTTCGGATTCGAAATGGAGACATTCGAATTTTTGAATATGCT
GCAGACACACGGTTTCCCCAAGGTCATGGGCGTGATGTCCCACCTGGACG
GCCTCAAGAATAACAAGGCACTTAATAAGACCAAAAAAAGGCTCAAACAA
CGCTTCTGGACGGAAATCTATCAGGGCGCTAAGATGTTTTACCTCTCCGG
CGTAATCAATCACAAGTACCTGAAGGGGGAGATCCGCAACATCACCCTCT
ACATCTCGCGGATGAAATACCGTCCCCTCACCTGGCGCAACACCCACCCC
TACGTCCTGGTGGATCGCTTCGAGGACATCACACGTCCCGAGGTACTGGC
CGCCACGCCGCAGGCAGAACGCGATCTTGTCCTCTACGGCTTCGTCCGCG
GCGCCCACCTTAAACCTTCCATGAAAGTCCACGTGATTGGTGCCGGAGAC
TATGACATGCAGACGGTGGACGCTCTTCCCGACCCCTGCCCTCTCCCCGA
GAAGGAAGGCAGTCGTTCCTCCCTTAAAACCAAGGACACCCTCCTCTATG
CGCCCATGGCCAACGTGGGTGCTGTCCGTTACGATGCTGACGCCATGTAC
ATTAATCTGCGTCACCTGCACTATACTAAGCCGGATGCCCTGGACCCGGC
CGCCCGTGCTGCTGCTGCTGCTGCTGTTGCCAGTGGAGAGGGCGAGGAAG
GGAGTGAGGAGGAGGAGGAGGAGAGTAGCAGCGAGGAGGAAGGGGAGGAA
GGGAAGAAGGGAGGGGTGGGAAGGAAGAGGGCACCGGCGGAGCTTGTGCG
GCGGTTACAGGATGTGTCGCATGGGCTGGACGAGAAGCTAGAGGGGGCAG
GCATGCGGTTATTTGCCGGAGGGGAGCTGTTGAAGGGAGGAGGGGAGGAG
GAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGACGAGGAGGACGAGGA
GGAGGACGAGGAGGAGGAGGAGGAGAATGGAGGGGCTTTGGGGGACAATT
ACGACGACGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGAGGGCGCAGCACCCGATGGAAAGATGGTTTATCCCGGCGGG
CCGCTGATGCTTATTTGGAGAGAGAGAAGGGTGTGTCGGCGCTAAACCTC
ATGGAGCTGGTATATGGGAAGGGAGGGAAAGGGGGAGGGAGGGGGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTCTTCCGGCCGAGGCGGA
GTGATACGAAGAAGGATGAGTTTGGCTGTCCTTTGGATGGCCTTGATTCG
TCGAGATTGACCCTGGGAGCTGTGAAGGAGGTGGACTGGACGGAGGACGG
GGAGGAGGGAGCATTGGCAGAGCTGAAAAGGAGACGCTTCGTGACGGGCG
GGTGGGGGGAAGGAGAGGAGGAGGGAGGGGAGAAGGACGATGATGGTGAA
GTGTTCGGTGACTTTGAGGACCTTGAGACTGGACAACGTTTTGGGAGGCG
GGCGGGAGACGAGGAGGAGGGGACGGACGAGGAGTTGGAGGCACGGCAGG
ATGCAGAGCTGGCGAGGCTTGCGAAGAAGGTTTCGTTGAAGGAAAAATTC
AATGCCGAGTTTGACTCGGGGAAAATACACCAATCGTCGGGAGTGATGGA
TTCGGAAGGAGTGGGTGAGGGGATGAGGGGAGGGAAGAAAGTGGGGAGGA
AGAGTCGGAAGGAGGTGGAGGAGGAAGACGCGGCGTTGGACGAGGAGGAG
AGGCAGGCCTTGCTTTTGGCAGCCAAGTTAAAGGAGGATCAGAAGGCGAG
GAATCAGGCGGAATTTGAGGAGGATGGATACGTGCAACGGCTCAAGTTTG
AAGGATTTCGACAAGGTCTATACGTGCGCATCAGCCTTAAGGGCGTGTCT
GCCGAGTTTTCCAAGCATTTTCGTCCCTCCGTCCCTGTGGTGGTGGGCGG
GCTGCTACCACACGAAACGGCCATGGGCTTGGTTCGTTGTAGGGTCAAGA
AGCATCGCTGGCATCGCAAGATTCTCAAGGCCAACGACCCTGTCATTTTC
TCCCTGGGCTGGCGCCGCTTCCAGTCCGTTCCGATCTTCTCAACCGAGGA
TCAAAACGAACGACAGCGGTACTTGAAGTACACCCCCGAGCACATGCATT
GCTTCGCCACCTTTTACGGGCCCTTGTGTCCGCCCAACACAGGCCTGCTC
GCCTTCCAATCCCTCTCCTCCTCCATCCCCGGCTTCCGCGTAGCCCTCAC
AGGCATCGTTCTCGAATTGGATTCCTCCTTTCACGTAGCGAAGAAGCTGA
AGCTCATTGGCACTCCCTGCAAGATCTTCAAAAACACCGCATTCATCTCC
GGCATGTTCAACAGTGATTTGGAGGTGGCCAAATTCGAAGGCGCCAAGAT
CCGAACTGTTTCGGGTGTGCGCGGGCAGATCAAGAAGGCCGCGGGGCCTG
GGGGGAGGGAGGGGGGAGGAAGGGCACCTTTCGCGCAACATTCGAGGACA
AGGTGTTGATGAGTGATATTGTGTTCTGTCGTACGTGGGTGCCGGTCGAG
CCAGCACGGTTGTACAACCCGGTGTGTTCGCTCTTGGCACGGAGGGAGGG
AGGGAGGGAGGGAGCGACGGGAGGCGGAAAGACCGAGGGAGGGGGG

protein sequence of NO05G00460.1

>NO05G00460.1-protein ID=NO05G00460.1-protein|Name=NO05G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1009bp
MGDSGLVQDVHKGHRPRQAGAKAKKKEIHQKKKKGLSTDRHNPRAFSVAN
IKRTQRNTQRNLDRQQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKTTLI
RSLVKYYTGQNLSDVLGPITVVAGKSKRITLFECPSDDLCAMLDLAKTAD
LVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALNKT
KKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMKYRPLT
WRNTHPYVLVDRFEDITRPEVLAATPQAERDLVLYGFVRGAHLKPSMKVH
VIGAGDYDMQTVDALPDPCPLPEKEGSRSSLKTKDTLLYAPMANVGAVRY
DADAMYINLRHLHYTKPDALDPAARAAAAAAVASGEGEEGSEEEEEESSS
EEEGEEGKKGGVGRKRAPAELVRRLQDVSHGLDEKLEGAGMRLFAGGELL
KGGGEEEEEEEEEEEEEDEEDEEEDEEEEEENGGALGDNYDDDDEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEGGRSTRWKDGLSRRAADAYLEREKG
VSALNLMELVYGKGGKGGGRGEEEEEEEEEEEDFFRPRRSDTKKDEFGCP
LDGLDSSRLTLGAVKEVDWTEDGEEGALAELKRRRFVTGGWGEGEEEGGE
KDDDGEVFGDFEDLETGQRFGRRAGDEEEGTDEELEARQDAELARLAKKV
SLKEKFNAEFDSGKIHQSSGVMDSEGVGEGMRGGKKVGRKSRKEVEEEDA
ALDEEERQALLLAAKLKEDQKARNQAEFEEDGYVQRLKFEGFRQGLYVRI
SLKGVSAEFSKHFRPSVPVVVGGLLPHETAMGLVRCRVKKHRWHRKILKA
NDPVIFSLGWRRFQSVPIFSTEDQNERQRYLKYTPEHMHCFATFYGPLCP
PNTGLLAFQSLSSSIPGFRVALTGIVLELDSSFHVAKKLKLIGTPCKIFK
NTAFISGMFNSDLEVAKFEGAKIRTVSGVRGQIKKAAGPGGREGGGRAPF
AQHSRTRC*

mRNA from alignment at chr5:167302..173004-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00460.1 ID=NO05G00460.1|Name=NO05G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=5703bp|location=Sequence derived from alignment at chr5:167302..173004- (Nannochloropsis oceanica)
ACAGGGCTGTCAAGAAAAACTCAACAGCAGTCATGGGTGACTCCGGGCTT
GTGCAGGACGTGCACAAGGGCCACCGGCCCCGGCAGGCGGGTGCCAAGGT
AGGAAAGGAGGGCTTCAATTGGGGAGGTCGAGTGTGTGCAGCTAACTCAA
TCCGCATACATTTATTTACATACCCGCCATGCACATATCTATGCAGGCAA
AAAAGAAGGAGATACATCAGAAGAAGAAGAAGGGCCTGTCCACAGACCGA
CATAACCCCAGGGCGTTTTCAGTGGCCAATATCAAACGGACGCAACGTAA
CACTCAGCGGAACTTGGACAGACAGCAACAGTAAGTCTTCGGGGGACAAT
CGAAGAGAAAGGTGGACAGTAGTATATAGCCATGTATGCATGTCTGTGTA
CCTGATGTCCTTTCAATCAATCTGTCGTTTTGACGCCCTCTGATGTGGCT
ACTCCTCCTCCACTCTGTCCCCCTCTCACTGACAGGAAGGAGCATGTCCC
GCTTGTCGACCGCACTGAGGCCTTGCCTCCCCCCTCTCTAGTGGTGGTGA
TGGGTCCCAAGGGCTGCGGAAAAACCACGCTCATCCGCTCTCTAGTCAAA
TACTACACTGGCCAGAACTTGTCCGATGTCCTGGGTAAGTGGCAGGGAGG
GAACGAGGGAAAGAGGGAAGAATGGAGGGAGGGAGGAAAGGAGAAAGCGT
AGACAGGAAGTAAAAACTTAAGATGAAGCGCTCCTTCGGTACATATTTAT
CCGTCTGCCATCTCTTTTAACCCTTTCCGTCACAGGCCCGATCACCGTCG
TGGCGGGGAAGAGCAAACGCATCACCCTCTTCGAATGTCCTTCCGACGAC
CTCTGTGCTATGCTTGACCTGGCCAAAACAGCAGACCTAGTGCTACTCAT
GGTGGACGGTTCTTTCGGATTCGAAATGGAGACATTCGAATTTTTGAATA
TGCTGCAGGTGGGCTCTTCCCTCCATCCATCTCTCCTTCCCCCCTTCCCC
CTTCCCTCCTGTCTCTCTTCTTTTACGTTCTCCGCAGCCAGAGTCTGAGA
TTTTGACATTCTCCCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CCGTCTTAAGACACACGGTTTCCCCAAGGTCATGGGCGTGATGTCCCACC
TGGACGGCCTCAAGAATAACAAGGCACTTAATAAGACCAAAAAAAGGCTC
AAACAACGCTTCTGGACGGAAATCTATCAGGTAGGGAAAGGAGGGAGGGA
AGAGGGGGAGTAGAAAGGAGGAAGGGAAGAGGGGGAGGGAAGAGGGGGAG
GGAAGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GACCACTCGAAGACAGTCGTGCTCACCTCATTTCTCATCCTGTCCTCTCC
TTTCCTCCTTTCCTCCTTCCCTCCCGTGCGCCTTGTCTTCCTCCTTCCCA
GGGCGCTAAGATGTTTTACCTCTCCGGCGTAATCAATCACAAGTACCTGA
AGGGGGAGATCCGCAACATCACCCTCTACATCTCGCGGATGGTAGGGTAG
AAGGAAGGAAGGGGGGGAAGGGAAGGAGGGAGGGAGGGGGGGAAGGGAAG
GAGGGAAGGAGGGAGAGAGGGAGGGAGGGAGGGAGGCAGTGTCTGAAGGG
CGAGTATCGCGACAATTCCCTTTGTATCTCGCGGATAGTAGGAAGGGAGA
GAGGGAGGGAGTGTCTGAAAGGGGAGATTTGCAACGTTTCCCTCCATCTT
TCGCGGATGGCAAGGTAGAAGGGAGGGAGGGAGGGAGGGGAAGAGAAGAG
CAAACAAGGGAAGGAGCGACACGTAAAGTTGATGTCAGACATTGAGACTC
ACCTCACCCCCCTCCCTCCCTTCCTCCCTAGAAATACCGTCCCCTCACCT
GGCGCAACACCCACCCCTACGTCCTGGTGGATCGCTTCGAGGACATCACA
CGTCCCGAGGTACTGGCCGCCACGCCGCAGGTAGGTAGGGAGGGAGGGAG
GGAGGGGAAACACAACCGTGGCCCTGGACCCATGCACTTACCCCCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGGCAGAACGCGATCTTGTC
CTCTACGGCTTCGTCCGCGGCGCCCACCTTAAACCTTCCATGAAAGTCCA
CGTGATTGGTGCCGGAGACTATGACATGCAGACGGTACGCGCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTCTCACCCTCCCTCCCTCCTTCTCACCC
TCCCTCCCTCCCTCCCCCCTCCCTCCGTCCCAGGTGGACGCTCTTCCCGA
CCCCTGCCCTCTCCCCGAGAAGGAAGGCAGTCGTTCCTCCCTTAAAACCA
AGGACACCCTCCTCTATGCGCCCATGGCCAACGTGGGTGCTGTCCGTTAC
GATGCTGACGCCATGTACATTAATCTGCGTCACCTGCACTATACTAAGGT
ACAAGCCCTCTCCTCCCTTCCTCCTCTTCTTTCTCCCTCCCTCCCTCGCT
CGTGTTTGTGGCTTCCCGTCATCACTACATTCGTTTATTTCCAGCATTTA
TCACCACTCACTTCCCTCCGTCCCTCCCTCCCTCCAGCCGGATGCCCTGG
ACCCGGCCGCCCGTGCTGCTGCTGCTGCTGCTGTTGCCAGTGGAGAGGGC
GAGGAAGGGAGTGAGGAGGAGGAGGAGGAGAGTAGCAGCGAGGAGGAAGG
GGAGGAAGGGAAGAAGGGAGGGGTGGGAAGGAAGAGGGCACCGGCGGAGC
TTGTGCGGCGGTTACAGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAAGAAGAGGAAAGATACGTCCGTCTTTCTCTCTCTCTCTCT
TTATATATATACATATGTGTATACACATCTCATCATTCCTTATGCATATA
TATACATTTATGTACATTTTGTCCTCTCTAGGATGTGTCGCATGGGCTGG
ACGAGAAGCTAGAGGGGGCAGGCATGCGGTTATTTGCCGGAGGGGAGCTG
TTGAAGGGAGGAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGA
GGAGGACGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGAGGAGAATG
GAGGGGCTTTGGGGGACAATTACGACGACGACGATGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGCGCAGCACCCGATGGA
AAGATGGTTTATCCCGGCGGGCCGCTGATGCTTATTTGGAGAGAGAGAAG
GGTGTGTCGGCGCTAAACCTCATGGAGCTGGTATATGGGAAGGGAGGGAA
AGGGGGAGGGAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
ATTTCTTCCGGCCGAGGCGGAGTGATACGAAGAAGGATGAGTTTGGCTGT
CCTTTGGATGGCCTTGATTCGTCGAGATTGACCCTGGGAGCTGTGAAGGT
AGGGAGGGGGGAGGGAGGGAAGGAGGGAAGGAGAGATGGAGGGTTATAAT
GACACGTGGCCTGACGTATATGAATCCTTGTATGTACCCGACAGGAGGTG
GACTGGACGGAGGACGGGGAGGAGGGAGCATTGGCAGAGCTGAAAAGGAG
ACGCTTCGTGACGGGCGGGTGGGGGGAAGGAGAGGAGGAGGGAGGGGAGA
AGGACGATGGTATGTGTAGGGTCGGGAGAGAGGAAGGGAGGGAGGAGGGG
AAGCAGGAAGGACGCACATGACTAGTGACTAACGTATGATTACAATATCT
CCCTTTTTCAATAGATGGTGAAGTGTTCGGTGACTTTGAGGACCTTGAGA
CTGGACAACGTTTTGGGAGGCGGGCGGGAGACGAGGAGGAGGGGACGGAC
GAGGAGTTGGAGGCACGGCAGGATGCAGAGCTGGCGAGGCTTGCGAAGAA
GGTTTCGTTGAAGGAAAAATTCAATGCCGAGTTTGACTCGGGGAAAATAC
ACCAATCGTCGGGAGTGATGGATTCGGAAGGAGTGGGTGAGGGGATGAGG
GGAGGGAAGAAAGTGGGGAGGAAGAGTCGGAAGGAGGTGGAGGAGGAAGA
CGCGGCGTTGGACGAGGAGGAGAGGCAGGCCTTGCTTTTGGCAGCCAAGT
TAAAGGAGGATCAGAAGGCGAGGAATCAGGCGGAATTTGAGGAGGATGGA
TACGTGCAACGGCTCAAGTTTGAAGGATTTCGACAAGTACGCAATAAACA
CATAACTCCTCTTGTTTTCCCTTTTTCCCATTCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTGTTTCCTGCCTGGCTTCTCAAAGCCCATTGACA
CAACACTCATCCATTCCCCTCCCCCTCCCTTCCTCCCTCTCTCCCTCCTT
CAGGGTCTATACGTGCGCATCAGCCTTAAGGGCGTGTCTGCCGAGTTTTC
CAAGCATTTTCGTCCCTCCGTCCCTGTGGTGGTGGGCGGGCTGCTACCAC
ACGAAACGGCCATGGGCTTGGTTCGTTGTAGGGTCAAGAAGCATCGCTGG
CATCGCAAGGTATGTAGGAAGGGAGGGGTGTTGCCTGTGCTTCTCTGTAA
TTGTCACTGCTAATCCCTCCCCTTCCCTCCTCCCTCCCTCCATCCCGCCC
TCCTCCCAGATTCTCAAGGCCAACGACCCTGTCATTTTCTCCCTGGGCTG
GCGCCGCTTCCAGTCCGTTCCGATCTTCTCAACCGAGGATCAAAACGAAC
GACAGCGGTACTTGAAGTACACCCCCGAGCACATGCATTGCTTCGCCACC
TTTTACGGGCCCTTGTGTCCGCCCAACACAGGTATGGCCTCCCTTCCCTC
CGTCCCTTCCTCCTTCTCTTTCTCCTTTCTTTCCTCCTTCCCTTCCTTCC
TACACATTCGCTTTCATTCTAATTGCCATCCACAAGCGCTTTCATCTCGT
TCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCCTCTCTTCAGGCCTGCTCGCCTTCCAATCCC
TCTCCTCCTCCATCCCCGGCTTCCGCGTAGCCCTCACAGGCATCGTTCTC
GAATTGGATTCCTCCTTTCACGTAGCGAAGAAGCTGAAGCTCATTGGCAC
TCCCTGCAAGATCTTCAAAAACACCGCATTCATCTCCGGCATGTTCAACA
GTGATTTGGAGGTGGCCAAATTCGAAGGTACGTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGTTTTCCCGTCCCTCCCTCC
CTCCCTCCCCCTTCTTCTTACCCCTTCTTCTCTTCCTCTCTTCCTGTCTT
TCCCTGCTTTTTTTCCCTTCTCTCCTCCAAGCATCCCAAGCATAAATGCC
AACCCACTCATCCCCCCCTCCTTCCTTCCCTACTTCCTCGTCCTCAGGCG
CCAAGATCCGAACTGTTTCGGGTGTGCGCGGGCAGATCAAGAAGGCCGCG
GGGCCTGGGGGGAGGGAGGGGGGAGGAAGGGCACCTTTCGCGCAACATTC
GAGGACAAGGTGTTGATGAGTGATATTGTGTTCTGTCGTACGTGGGTGCC
GGTCGAGCCAGCACGGTTGTACAACCCGGTGTGTTCGCTCTTGGCACGGA
GGGAGGGAGGGAGGGAGGGAGCGACGGGAGGCGGAAAGACCGAGGGAGGG
GGG

Coding sequence (CDS) from alignment at chr5:167302..173004-

>NO05G00460.1 ID=NO05G00460.1|Name=NO05G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=3027bp|location=Sequence derived from alignment at chr5:167302..173004- (Nannochloropsis oceanica)
ATGGGTGACTCCGGGCTTGTGCAGGACGTGCACAAGGGCCACCGGCCCCG
GCAGGCGGGTGCCAAGGCAAAAAAGAAGGAGATACATCAGAAGAAGAAGA
AGGGCCTGTCCACAGACCGACATAACCCCAGGGCGTTTTCAGTGGCCAAT
ATCAAACGGACGCAACGTAACACTCAGCGGAACTTGGACAGACAGCAACA
GAAGGAGCATGTCCCGCTTGTCGACCGCACTGAGGCCTTGCCTCCCCCCT
CTCTAGTGGTGGTGATGGGTCCCAAGGGCTGCGGAAAAACCACGCTCATC
CGCTCTCTAGTCAAATACTACACTGGCCAGAACTTGTCCGATGTCCTGGG
CCCGATCACCGTCGTGGCGGGGAAGAGCAAACGCATCACCCTCTTCGAAT
GTCCTTCCGACGACCTCTGTGCTATGCTTGACCTGGCCAAAACAGCAGAC
CTAGTGCTACTCATGGTGGACGGTTCTTTCGGATTCGAAATGGAGACATT
CGAATTTTTGAATATGCTGCAGACACACGGTTTCCCCAAGGTCATGGGCG
TGATGTCCCACCTGGACGGCCTCAAGAATAACAAGGCACTTAATAAGACC
AAAAAAAGGCTCAAACAACGCTTCTGGACGGAAATCTATCAGGGCGCTAA
GATGTTTTACCTCTCCGGCGTAATCAATCACAAGTACCTGAAGGGGGAGA
TCCGCAACATCACCCTCTACATCTCGCGGATGAAATACCGTCCCCTCACC
TGGCGCAACACCCACCCCTACGTCCTGGTGGATCGCTTCGAGGACATCAC
ACGTCCCGAGGTACTGGCCGCCACGCCGCAGGCAGAACGCGATCTTGTCC
TCTACGGCTTCGTCCGCGGCGCCCACCTTAAACCTTCCATGAAAGTCCAC
GTGATTGGTGCCGGAGACTATGACATGCAGACGGTGGACGCTCTTCCCGA
CCCCTGCCCTCTCCCCGAGAAGGAAGGCAGTCGTTCCTCCCTTAAAACCA
AGGACACCCTCCTCTATGCGCCCATGGCCAACGTGGGTGCTGTCCGTTAC
GATGCTGACGCCATGTACATTAATCTGCGTCACCTGCACTATACTAAGCC
GGATGCCCTGGACCCGGCCGCCCGTGCTGCTGCTGCTGCTGCTGTTGCCA
GTGGAGAGGGCGAGGAAGGGAGTGAGGAGGAGGAGGAGGAGAGTAGCAGC
GAGGAGGAAGGGGAGGAAGGGAAGAAGGGAGGGGTGGGAAGGAAGAGGGC
ACCGGCGGAGCTTGTGCGGCGGTTACAGGATGTGTCGCATGGGCTGGACG
AGAAGCTAGAGGGGGCAGGCATGCGGTTATTTGCCGGAGGGGAGCTGTTG
AAGGGAGGAGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGA
GGACGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGAGGAGAATGGAG
GGGCTTTGGGGGACAATTACGACGACGACGATGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGAGGGCGCAGCACCCGATGGAAAG
ATGGTTTATCCCGGCGGGCCGCTGATGCTTATTTGGAGAGAGAGAAGGGT
GTGTCGGCGCTAAACCTCATGGAGCTGGTATATGGGAAGGGAGGGAAAGG
GGGAGGGAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATT
TCTTCCGGCCGAGGCGGAGTGATACGAAGAAGGATGAGTTTGGCTGTCCT
TTGGATGGCCTTGATTCGTCGAGATTGACCCTGGGAGCTGTGAAGGAGGT
GGACTGGACGGAGGACGGGGAGGAGGGAGCATTGGCAGAGCTGAAAAGGA
GACGCTTCGTGACGGGCGGGTGGGGGGAAGGAGAGGAGGAGGGAGGGGAG
AAGGACGATGATGGTGAAGTGTTCGGTGACTTTGAGGACCTTGAGACTGG
ACAACGTTTTGGGAGGCGGGCGGGAGACGAGGAGGAGGGGACGGACGAGG
AGTTGGAGGCACGGCAGGATGCAGAGCTGGCGAGGCTTGCGAAGAAGGTT
TCGTTGAAGGAAAAATTCAATGCCGAGTTTGACTCGGGGAAAATACACCA
ATCGTCGGGAGTGATGGATTCGGAAGGAGTGGGTGAGGGGATGAGGGGAG
GGAAGAAAGTGGGGAGGAAGAGTCGGAAGGAGGTGGAGGAGGAAGACGCG
GCGTTGGACGAGGAGGAGAGGCAGGCCTTGCTTTTGGCAGCCAAGTTAAA
GGAGGATCAGAAGGCGAGGAATCAGGCGGAATTTGAGGAGGATGGATACG
TGCAACGGCTCAAGTTTGAAGGATTTCGACAAGGTCTATACGTGCGCATC
AGCCTTAAGGGCGTGTCTGCCGAGTTTTCCAAGCATTTTCGTCCCTCCGT
CCCTGTGGTGGTGGGCGGGCTGCTACCACACGAAACGGCCATGGGCTTGG
TTCGTTGTAGGGTCAAGAAGCATCGCTGGCATCGCAAGATTCTCAAGGCC
AACGACCCTGTCATTTTCTCCCTGGGCTGGCGCCGCTTCCAGTCCGTTCC
GATCTTCTCAACCGAGGATCAAAACGAACGACAGCGGTACTTGAAGTACA
CCCCCGAGCACATGCATTGCTTCGCCACCTTTTACGGGCCCTTGTGTCCG
CCCAACACAGGCCTGCTCGCCTTCCAATCCCTCTCCTCCTCCATCCCCGG
CTTCCGCGTAGCCCTCACAGGCATCGTTCTCGAATTGGATTCCTCCTTTC
ACGTAGCGAAGAAGCTGAAGCTCATTGGCACTCCCTGCAAGATCTTCAAA
AACACCGCATTCATCTCCGGCATGTTCAACAGTGATTTGGAGGTGGCCAA
ATTCGAAGGCGCCAAGATCCGAACTGTTTCGGGTGTGCGCGGGCAGATCA
AGAAGGCCGCGGGGCCTGGGGGGAGGGAGGGGGGAGGAAGGGCACCTTTC
GCGCAACATTCGAGGACAAGGTGTTGA

Synonyms

Publications