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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:163627..166382 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00440.1 vs.
Match: EWM28341.1 (hypothetical protein Naga_100367g4 [Nannochloropsis gaditana]) HSP 1 Score: 345.9 bits (886), Expect = 1.900e-91 Identity = 180/356 (50.56%), Postives = 234/356 (65.73%), Query Frame = 0
Query: 75 SLPRRMWRLEPWGYPARSQFAITHLKFPAGSSNKGCYQYRRHVAVAYRLFLALYWTFWILYSSLGGDGPPTWWWCVYVTDWSAALMGGYFWAAFLAMIFSRTRFLDTAAWFLHDIACPLSLMVAILYWGMGSDAPVNGVSVHFHGVNALLMVIDLALSRYPYHLKHFLPATGFIAAYLLFNGLFWHHTGTVIYAPLNYSMMPLALISIIGTFLVLLPSMHLLCWRWELACFAYSEKRRNLWARKTRGEDPVPSLYNGHSIQQKRGGEQQKTNAEEKEERRGKSEGGTDDLQRSTSHDLEEGEKEGVVVPPSTLSDRVLATRHLPSLEDYDEKGKEGISEEACGGPRGGVVIGDKED 431
SLP+R+W+LEPWGYPARS FA+THLKFP S G Y H+A+ YRL LYW+FW+LYS+LGGDGPPT WWCVYVT+W+AA+MGGY W AFLA++ R FLD A WFLHDIA PLS+MV ++YW P++G+ VH HGVNALLMV+DLAL+RYPYHLKHFLPA GF+A Y++FNG++W G V+Y PL+Y+ LA +++GTF ++ P +HLLCWRWELACFA+SE+RR + P+ S Y + RG + + E+ E +GG R ++ G KEG + L+D VLA R + L G+ G+ E G GV D+E+
Sbjct: 4 SLPQRLWKLEPWGYPARSHFAVTHLKFPVASGKYGLSLY--HIALTYRLVFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYTHPFLAATALVGTFFIIFPIVHLLCWRWELACFAWSERRRRNLLGGGNRKRPLLSSYARRDRESSRGEGRAEDGVEQGLE---SQDGGDACNGRGGTNGGGTGGKEGEAI---GLTDAVLAMRDVLLL------GERGVGERRWEGQGEGV---DREE 342
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00440.1 ID=NO05G00440.1|Name=NO05G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp
TTCCAATGACCATGGCAGAGATCTAAAGACAACCGCTTTATCATTCAATA
AAAAATTCGTTCTCGTAAGATCCGCCCCCAAACCCATCCATATCCTTGGC
GTGATTTTGTACTGATAACCACGGGATCTTTTCGGGGAGCCCAAACAGGT
GACTCTCTCCTTCCCCCTCTTTTGACGCCATATCTCACCCCCCAGTGGCC
AAAATATCAAATTTTGAAGTCAAATATTCTCGTCGACCTTAGTTGCAACT
CTTTGCACCGGCAATAAGCATAAGCTGAAGGCGTCTCTTTTCGTCTGAAT
CCTCAAACCTGCCCCCTCCACCTCGTGCGGATCCAACATGGAATTTATCG
CAATCGCAAAAACAAACACTATGTCGAAATTTCGCGTTTTATTTCACGTT
TGTATAGTTTACAAGTGATACGAAAGCTAAGTGATGTAATTTGGCTGAAA
TTGTGCAAAATCTGGCTCCGATGCCGCTATTTTACTGCTTTAGAACTTAT
ATACACACAAAGCAAATTGGTTTTATTGTGCATAACAGAGAGATTATGTC
TGAGTAGAGGATCAAGGATGGGGAGCTTTAAGTCTCTCTCTCGATGAAAA
GGGCATAGTCAAGAGCTTTGAGTATCCTGCGACTTCTCCTCCCCTTCTTC
TTTCCTCCCTTTTCCCTTCTCCCTTTTCCCTCCTCTCATTTTCCTGTATC
GTTTATTCCTGATATCCAAATTTCTTGAGTATCTAGTTGGAAACGAGTAC
CGTGGTGGCTTTAATCCAGGGGTTTCCCGGGTTTTGTGGGTTATCCAGGA
CGGCCCATCCCTGTGAACCTCCTGGTCCATGGTGCTGTCAAAATGTAACT
CACTTAAAATGAATATCAGAGCACGTTGCGTGCGCCAAATATCCTCGCAG
TATCAGCACGAAAGATTAATTACCTCAAATTTATATCAAACAAGTCCCAT
ACCTTGGCTTTGAAGCTTCCTTTATGGTGCTTAGATTGCGTCACGGCAAC
TTGGGCTGGGGCAGCCCTTGTCGCCGCTATCGCGGGCATTGTCCAGCCGC
CCCCCTCCCACTTGTCTTGATCATGTGCTGGAGTAAACACTGCAGCGACG
GAAGACAAAATGGTCCATGGCCAGTGTACCAAAGGTGGATTGTCTCGAAA
GCACCGGTCTTGCGTGTGATTGGGCCTCTCTTTGAGCTTGCTTTCATAGA
TCTCTAGGGGTTGCCCAGTCTCTTTTTCTCACTCCCATTCCACTTTTGTA
TCTCAAGCTAACAATAGTCATGTGGACCATGCGATTGTTGACTAACAGGC
AGGCGAGCGCCCATCTATGCCTCGTATTTTCCCTGGAGCCACCATCAAGC
ACAACCTCACCCTAGGCATCATATCTCCCTTACCCATAGCAGGAGGGACG
AGCAAGTACTGTCGGACCGCAGCTACGCCTAACACCCTGCTGCCTCCTCC
TACCTCCTGCTGTGGTCTCAACCTATACCTGGCTGCTGTAGCATCAGCGT
CGATCTCTACTTTTCCAACCGAACGCATGTCGGCCTATTCCCTTCCACGG
CGCATGTGGCGGCTGGAGCCATGGGGATATCCGGCCCGTTCCCAATTTGC
CATTACACATCTCAAGTTTCCAGCTGGCAGCAGCAATAAGGGGTGCTACC
AGTATCGCCGACACGTGGCTGTGGCGTACCGCTTGTTTTTGGCTCTGTAC
TGGACATTTTGGATTTTGTATTCCTCCCTAGGCGGTGACGGTCCCCCAAC
GTGGTGGTGGTGCGTGTACGTCACAGACTGGAGCGCTGCGTTAATGGGCG
GGTATTTTTGGGCTGCCTTCCTTGCGATGATCTTCTCGCGGACTCGATTC
CTGGACACGGCGGCTTGGTTTTTGCACGACATTGCATGTCCGCTCTCCTT
GATGGTGGCGATCCTTTATTGGGGCATGGGGTCGGACGCGCCCGTTAATG
GGGTCAGCGTTCATTTCCATGGGGTTAATGCCCTGCTTATGGTTATAGAT
CTAGCCTTATCTCGGTACCCTTACCACCTGAAGCATTTTTTACCTGCGAC
GGGCTTTATTGCTGCGTATTTGCTTTTTAATGGGTTGTTCTGGCACCATA
CCGGAACGGTGATATATGCCCCGCTCAACTACTCGATGATGCCTTTGGCC
TTGATATCTATAATCGGAACTTTTCTGGTGCTCTTGCCTTCCATGCATCT
TTTGTGTTGGAGATGGGAATTGGCTTGTTTTGCTTACAGTGAGAAGAGGC
GGAATTTATGGGCGAGGAAGACGAGAGGGGAGGATCCGGTGCCTTCCCTG
TACAACGGCCACAGTATCCAACAAAAGAGGGGGGGGGAGCAACAGAAAAC
GAATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTCGGAGGGGGGGACGG
ATGACCTACAGAGGAGTACAAGTCATGACCTGGAGGAAGGGGAGAAGGAG
GGAGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGGGTGCTAGCCACGCG
CCACCTCCCCTCTTTGGAAGATTATGATGAGAAGGGGAAGGAAGGAATAA
GCGAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGGTGATCGGAGATAAG
GAGGATGCCCGTTATGTAACGGCTGCGGCGGGTGGGTCAACGGCCACGGC
TCCCGTTGCTGTCGCTGTTGATAGATTGAAAGGATGAGTTTAAGGGTTTG
TTAATAAGAGGAAAGGAGGGCATGAGAGGATATACAGGGAGGGAGGGAGA
ATGGGA back to topprotein sequence of NO05G00440.1 >NO05G00440.1-protein ID=NO05G00440.1-protein|Name=NO05G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MPRIFPGATIKHNLTLGIISPLPIAGGTSKYCRTAATPNTLLPPPTSCCG
LNLYLAAVASASISTFPTERMSAYSLPRRMWRLEPWGYPARSQFAITHLK
FPAGSSNKGCYQYRRHVAVAYRLFLALYWTFWILYSSLGGDGPPTWWWCV
YVTDWSAALMGGYFWAAFLAMIFSRTRFLDTAAWFLHDIACPLSLMVAIL
YWGMGSDAPVNGVSVHFHGVNALLMVIDLALSRYPYHLKHFLPATGFIAA
YLLFNGLFWHHTGTVIYAPLNYSMMPLALISIIGTFLVLLPSMHLLCWRW
ELACFAYSEKRRNLWARKTRGEDPVPSLYNGHSIQQKRGGEQQKTNAEEK
EERRGKSEGGTDDLQRSTSHDLEEGEKEGVVVPPSTLSDRVLATRHLPSL
EDYDEKGKEGISEEACGGPRGGVVIGDKEDARYVTAAAGGSTATAPVAVA
VDRLKG* back to topmRNA from alignment at chr5:163627..166382+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00440.1 ID=NO05G00440.1|Name=NO05G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp|location=Sequence derived from alignment at chr5:163627..166382+ (Nannochloropsis oceanica)
TTCCAATGACCATGGCAGAGATCTAAAGACAACCGCTTTATCATTCAATA
AAAAATTCGTTCTCGTAAGATCCGCCCCCAAACCCATCCATATCCTTGGC
GTGATTTTGTACTGATAACCACGGGATCTTTTCGGGGAGCCCAAACAGGT
GACTCTCTCCTTCCCCCTCTTTTGACGCCATATCTCACCCCCCAGTGGCC
AAAATATCAAATTTTGAAGTCAAATATTCTCGTCGACCTTAGTTGCAACT
CTTTGCACCGGCAATAAGCATAAGCTGAAGGCGTCTCTTTTCGTCTGAAT
CCTCAAACCTGCCCCCTCCACCTCGTGCGGATCCAACATGGAATTTATCG
CAATCGCAAAAACAAACACTATGTCGAAATTTCGCGTTTTATTTCACGTT
TGTATAGTTTACAAGTGATACGAAAGCTAAGTGATGTAATTTGGCTGAAA
TTGTGCAAAATCTGGCTCCGATGCCGCTATTTTACTGCTTTAGAACTTAT
ATACACACAAAGCAAATTGGTTTTATTGTGCATAACAGAGAGATTATGTC
TGAGTAGAGGATCAAGGATGGGGAGCTTTAAGTCTCTCTCTCGATGAAAA
GGGCATAGTCAAGAGCTTTGAGTATCCTGCGACTTCTCCTCCCCTTCTTC
TTTCCTCCCTTTTCCCTTCTCCCTTTTCCCTCCTCTCATTTTCCTGTATC
GTTTATTCCTGATATCCAAATTTCTTGAGTATCTAGTTGGAAACGAGTAC
CGTGGTGGCTTTAATCCAGGGGTTTCCCGGGTTTTGTGGGTTATCCAGGA
CGGCCCATCCCTGTGAACCTCCTGGTCCATGGTGCTGTCAAAATGTAACT
CACTTAAAATGAATATCAGAGCACGTTGCGTGCGCCAAATATCCTCGCAG
TATCAGCACGAAAGATTAATTACCTCAAATTTATATCAAACAAGTCCCAT
ACCTTGGCTTTGAAGCTTCCTTTATGGTGCTTAGATTGCGTCACGGCAAC
TTGGGCTGGGGCAGCCCTTGTCGCCGCTATCGCGGGCATTGTCCAGCCGC
CCCCCTCCCACTTGTCTTGATCATGTGCTGGAGTAAACACTGCAGCGACG
GAAGACAAAATGGTCCATGGCCAGTGTACCAAAGGTGGATTGTCTCGAAA
GCACCGGTCTTGCGTGTGATTGGGCCTCTCTTTGAGCTTGCTTTCATAGA
TCTCTAGGGGTTGCCCAGTCTCTTTTTCTCACTCCCATTCCACTTTTGTA
TCTCAAGCTAACAATAGTCATGTGGACCATGCGATTGTTGACTAACAGGC
AGGCGAGCGCCCATCTATGCCTCGTATTTTCCCTGGAGCCACCATCAAGC
ACAACCTCACCCTAGGCATCATATCTCCCTTACCCATAGCAGGAGGGACG
AGCAAGTACTGTCGGACCGCAGCTACGCCTAACACCCTGCTGCCTCCTCC
TACCTCCTGCTGTGGTCTCAACCTATACCTGGCTGCTGTAGCATCAGCGT
CGATCTCTACTTTTCCAACCGAACGCATGTCGGCCTATTCCCTTCCACGG
CGCATGTGGCGGCTGGAGCCATGGGGATATCCGGCCCGTTCCCAATTTGC
CATTACACATCTCAAGTTTCCAGCTGGCAGCAGCAATAAGGGGTGCTACC
AGTATCGCCGACACGTGGCTGTGGCGTACCGCTTGTTTTTGGCTCTGTAC
TGGACATTTTGGATTTTGTATTCCTCCCTAGGCGGTGACGGTCCCCCAAC
GTGGTGGTGGTGCGTGTACGTCACAGACTGGAGCGCTGCGTTAATGGGCG
GGTATTTTTGGGCTGCCTTCCTTGCGATGATCTTCTCGCGGACTCGATTC
CTGGACACGGCGGCTTGGTTTTTGCACGACATTGCATGTCCGCTCTCCTT
GATGGTGGCGATCCTTTATTGGGGCATGGGGTCGGACGCGCCCGTTAATG
GGGTCAGCGTTCATTTCCATGGGGTTAATGCCCTGCTTATGGTTATAGAT
CTAGCCTTATCTCGGTACCCTTACCACCTGAAGCATTTTTTACCTGCGAC
GGGCTTTATTGCTGCGTATTTGCTTTTTAATGGGTTGTTCTGGCACCATA
CCGGAACGGTGATATATGCCCCGCTCAACTACTCGATGATGCCTTTGGCC
TTGATATCTATAATCGGAACTTTTCTGGTGCTCTTGCCTTCCATGCATCT
TTTGTGTTGGAGATGGGAATTGGCTTGTTTTGCTTACAGTGAGAAGAGGC
GGAATTTATGGGCGAGGAAGACGAGAGGGGAGGATCCGGTGCCTTCCCTG
TACAACGGCCACAGTATCCAACAAAAGAGGGGGGGGGAGCAACAGAAAAC
GAATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTCGGAGGGGGGGACGG
ATGACCTACAGAGGAGTACAAGTCATGACCTGGAGGAAGGGGAGAAGGAG
GGAGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGGGTGCTAGCCACGCG
CCACCTCCCCTCTTTGGAAGATTATGATGAGAAGGGGAAGGAAGGAATAA
GCGAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGGTGATCGGAGATAAG
GAGGATGCCCGTTATGTAACGGCTGCGGCGGGTGGGTCAACGGCCACGGC
TCCCGTTGCTGTCGCTGTTGATAGATTGAAAGGATGAGTTTAAGGGTTTG
TTAATAAGAGGAAAGGAGGGCATGAGAGGATATACAGGGAGGGAGGGAGA
ATGGGA back to topCoding sequence (CDS) from alignment at chr5:163627..166382+ >NO05G00440.1 ID=NO05G00440.1|Name=NO05G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr5:163627..166382+ (Nannochloropsis oceanica)
ATGCCTCGTATTTTCCCTGGAGCCACCATCAAGCACAACCTCACCCTAGG
CATCATATCTCCCTTACCCATAGCAGGAGGGACGAGCAAGTACTGTCGGA
CCGCAGCTACGCCTAACACCCTGCTGCCTCCTCCTACCTCCTGCTGTGGT
CTCAACCTATACCTGGCTGCTGTAGCATCAGCGTCGATCTCTACTTTTCC
AACCGAACGCATGTCGGCCTATTCCCTTCCACGGCGCATGTGGCGGCTGG
AGCCATGGGGATATCCGGCCCGTTCCCAATTTGCCATTACACATCTCAAG
TTTCCAGCTGGCAGCAGCAATAAGGGGTGCTACCAGTATCGCCGACACGT
GGCTGTGGCGTACCGCTTGTTTTTGGCTCTGTACTGGACATTTTGGATTT
TGTATTCCTCCCTAGGCGGTGACGGTCCCCCAACGTGGTGGTGGTGCGTG
TACGTCACAGACTGGAGCGCTGCGTTAATGGGCGGGTATTTTTGGGCTGC
CTTCCTTGCGATGATCTTCTCGCGGACTCGATTCCTGGACACGGCGGCTT
GGTTTTTGCACGACATTGCATGTCCGCTCTCCTTGATGGTGGCGATCCTT
TATTGGGGCATGGGGTCGGACGCGCCCGTTAATGGGGTCAGCGTTCATTT
CCATGGGGTTAATGCCCTGCTTATGGTTATAGATCTAGCCTTATCTCGGT
ACCCTTACCACCTGAAGCATTTTTTACCTGCGACGGGCTTTATTGCTGCG
TATTTGCTTTTTAATGGGTTGTTCTGGCACCATACCGGAACGGTGATATA
TGCCCCGCTCAACTACTCGATGATGCCTTTGGCCTTGATATCTATAATCG
GAACTTTTCTGGTGCTCTTGCCTTCCATGCATCTTTTGTGTTGGAGATGG
GAATTGGCTTGTTTTGCTTACAGTGAGAAGAGGCGGAATTTATGGGCGAG
GAAGACGAGAGGGGAGGATCCGGTGCCTTCCCTGTACAACGGCCACAGTA
TCCAACAAAAGAGGGGGGGGGAGCAACAGAAAACGAATGCAGAGGAGAAA
GAGGAGAGGAGGGGAAAGTCGGAGGGGGGGACGGATGACCTACAGAGGAG
TACAAGTCATGACCTGGAGGAAGGGGAGAAGGAGGGAGTTGTTGTCCCCC
CGTCTACTCTCTCGGATAGGGTGCTAGCCACGCGCCACCTCCCCTCTTTG
GAAGATTATGATGAGAAGGGGAAGGAAGGAATAAGCGAAGAGGCGTGTGG
CGGACCTAGGGGTGGTGTGGTGATCGGAGATAAGGAGGATGCCCGTTATG
TAACGGCTGCGGCGGGTGGGTCAACGGCCACGGCTCCCGTTGCTGTCGCT
GTTGATAGATTGAAAGGATGA back to top
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