NO05G00410.1, NO05G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00410.1
Unique Name	NO05G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2532
Alignment location	chr5:155383..158054 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:155383..158054 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G00410.1 vs.
Match: EWM28344.1 (hypothetical protein Naga_100846g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 2.600e-94
Identity = 167/215 (77.67%), Postives = 183/215 (85.12%), Query Frame = 0

Query:  631 SSSSGAPDPWWKMKYLELVEGTSFDPMEEGKRRSIFGYYQREAEEVQDLPFLPGGDPGEEVELPVFSRAQFVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSYDAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLSVYGLWQMYRDDVSAEERGTAPWEEEDEGAEEGENGE--KKRIVRG 844
            S  SGAP  WW+ KYL+LVEGTSFDP E GKRRSIFGYYQRE EE  DLPFLP GDP E+ ELPVF R QFVNTTWT+G V  G   WNP K+V+RTRVFFREDGRVIWVNGGN GEW++DA+SNVFRFGRE+FLSWNGRRS+PTLLTE+RSLYYMQGFVIGWAPF PLSV+GLWQMYRDDVS EERG APWEEE+EG E GE GE  KK ++RG
Sbjct:    1 SPPSGAPKAWWEQKYLQLVEGTSFDPAEAGKRRSIFGYYQREGEEAPDLPFLPSGDPPEDAELPVFRREQFVNTTWTLGTVSDG---WNPLKRVQRTRVFFREDGRVIWVNGGNKGEWTFDARSNVFRFGRESFLSWNGRRSYPTLLTEERSLYYMQGFVIGWAPFTPLSVFGLWQMYRDDVSEEERGVAPWEEEEEGREGGEGGEGGKKSMLRG 212

The following BLAST results are available for this feature:

BLAST of NO05G00410.1 vs.

BLAST of NO05G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28344.1	2.600e-94	77.67	hypothetical protein Naga_100846g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00410	NO05G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00410.1	NO05G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00410.1.cds1	NO05G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G00410.1.cds2	NO05G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:155383..158054-
coding sequence from alignment at chr5:155383..158054-

mRNA sequence

>NO05G00410.1 ID=NO05G00410.1|Name=NO05G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2532bp
ATGGCCAGGAGACGGACACGGACGAAGCAAATGACCACCAAGGCCACGGC
AGGAGGCATACTATTGGCGTGTTGCTCTGTTAGCGCTTTCTTCTGGGGCA
GAAACCCCCCTTCATCGTCCTTGTCCTCACGGCAGGCTTGGCGTGCATCA
AATCGTCACCACTTCAGACCACCCTCTTTCTCCCCCTCCTCCTCCGCCTC
CATATGGCTCCACTCATCGTTATCACCCAGCGGCGACAGCTGCAGCAGCA
CCATCAGAAGCAGTTGTTGTAGAAGACGTCTTTCCTTCTCCTCCACCGCC
ATCGCCTCCATCAAAAACGACGACCAACAACAAGAGCCCAACAGAGATAC
AGCACCATCCTCTCCCCCACCCTCCACCCCTGCCTCCTCAGCCTCCTCCT
CCTCCTCCCCCCCCTCAGCAGATGTATCGCAGCTTCCACCTCCATCCTTA
TTATCATCATCACTAGAAGAAGACGCAGCAGCAGCAGCCTCGAGAGATCC
CTACACCGGCACATACTCCACCTACGGTTATCCCCCTCCCCTTCCATCCT
ATTTCTACCCTCCTCCTGCCTCCTTCTACCCTCCTCCTCCTCCCCCTTCA
TCCCTCGATCCCCCTGCTTCCTCCCTCTCCACACCCTTATCATCGTCCTC
CTCTGCTGCTGCTGACGGTGATAGCAGCGTCACCTCCACGGCGTCTGCTC
CTCCTTCACCGTACCCTGATCCTTATGCTGGCTTTTACTACCCTCCTCCC
TCCTTCTATCCTCCTCCGCCCCCTCCTCCTCCATCATCATCTTCGCAAGA
CGAAGGCATGTCCCAGGAGCAGCAGCAACAGCGGTGGATGGACGCAGCTT
ATGGCTCTTCTGTTTCCAACCAAACCGTCGCAGGAGCAGGGGGAGGGGAA
GGAGTGATGGACGGGTGGCAAGATGCCTATGGTCGGAGTATGTATGGCTA
TTATCCCCCTCCGCCTCCTTACGGATATGACCCATACTACGCTGCTGCTG
CTGCTGCTTCGTGGCAGGAGGAGGAGGAAGGATGGAGCGAGGGCGAGGAC
GAGGACGAGGACGAGGAGGAGTGGTGGAGTGATGAGGAGGATGATGGTTA
TTACAGTGACGAGGAGGATGAGGAGGATGAGGGCTGGAGGGAGGAGGAGG
AAGAGGAGTGGAGGAGGTCGAAGGCAGGGATGGAAGACGATGTTGAGGAG
GAGGGAGGGAGGGATGGCGGGTTGGATGATCTGATAAGTGAGGCGATTAC
CTCGGTGACGCTTGGGGAGAAGGCCGAGGATGAGGGGGACGAAGGAAGCG
AGATAGGGAAGGAGAAAGGGAAGGAAGGGGAGCAGACACAGTCTATGTCG
CAGATGGGGGAGGAGGTGGCGGTGGAGGAGTCGGAGGGAGTGAAGGAGGA
AGAGGAGGAGGGGGCACTTTCAGTTCGAAAGGAGGGCGAGGAGGAGGGGC
AGGAGCAACCGCAGCAAGAAGCAGCCAAAGATGAAAGGGATATTCAAGTC
GCTGATGACAAAGATAAGGATGAGGACGAGAGGGAAGGAGCGGAGGCAGG
AAGCAAGGATGATGAAGAATCCCCTGTGTCTTCCCTTGATTCCTCTGGCG
AGGAACTAAAAGAGAAGGAGGGCGTGGACGAAGACGACAGCAACACTCCC
GCTTCAGTCTCCTTTTCTGCCTCCCTTGCCCGCGCTGCCGGCACGGCCTC
TGCTGCCTTCTCCTCCTCCATGGCCACTGCCCCTCTCCCCTCCTCCGCCT
CCCTCCCTTCCCCCGAAGAACCCAACCCCTTCGAACCCACGACCCCTTCC
TCCCCCCCTTCCTCCCCCCCTTCCTCCTCGGAGACGCCTGAAGCCAAGCC
CAGGTGGTCCTTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCA
GCGGGGCCCCCGATCCTTGGTGGAAAATGAAGTATTTGGAGCTGGTGGAG
GGCACATCATTTGACCCTATGGAGGAAGGAAAAAGGCGGTCAATTTTTGG
GTATTATCAAAGAGAGGCGGAGGAGGTGCAGGACCTGCCGTTCTTGCCAG
GAGGTGACCCGGGGGAGGAGGTTGAGCTTCCTGTCTTCAGTCGTGCGCAA
TTCGTGAATACGACGTGGACGATTGGGATAGTAGGAGGGGGGGAGGGGGG
GTGGAATCCGTTTAAAAAAGTGCGGAGGACGAGGGTGTTTTTCAGGGAGG
ACGGACGAGTGATTTGGGTGAATGGGGGAAACATCGGGGAGTGGAGTTAT
GACGCGAAGAGCAACGTGTTTAGGTTTGGAAGGGAGACTTTTTTAAGTTG
GAATGGAAGGAGGAGTTTCCCGACGCTGCTGACGGAGGACCGGTCGCTTT
ATTACATGCAGGGCTTTGTGATTGGCTGGGCACCGTTTAAGCCATTGAGT
GTGTATGGGCTTTGGCAGATGTACCGGGATGACGTGAGTGCGGAGGAGCG
AGGGACGGCACCGTGGGAGGAGGAAGATGAGGGGGCGGAGGAGGGGGAGA
ACGGGGAGAAGAAGAGGATTGTGAGAGGGTAG

protein sequence of NO05G00410.1

>NO05G00410.1-protein ID=NO05G00410.1-protein|Name=NO05G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=844bp
MARRRTRTKQMTTKATAGGILLACCSVSAFFWGRNPPSSSLSSRQAWRAS
NRHHFRPPSFSPSSSASIWLHSSLSPSGDSCSSTIRSSCCRRRLSFSSTA
IASIKNDDQQQEPNRDTAPSSPPPSTPASSASSSSSPPSADVSQLPPPSL
LSSSLEEDAAAAASRDPYTGTYSTYGYPPPLPSYFYPPPASFYPPPPPPS
SLDPPASSLSTPLSSSSSAAADGDSSVTSTASAPPSPYPDPYAGFYYPPP
SFYPPPPPPPPSSSSQDEGMSQEQQQQRWMDAAYGSSVSNQTVAGAGGGE
GVMDGWQDAYGRSMYGYYPPPPPYGYDPYYAAAAAASWQEEEEGWSEGED
EDEDEEEWWSDEEDDGYYSDEEDEEDEGWREEEEEEWRRSKAGMEDDVEE
EGGRDGGLDDLISEAITSVTLGEKAEDEGDEGSEIGKEKGKEGEQTQSMS
QMGEEVAVEESEGVKEEEEEGALSVRKEGEEEGQEQPQQEAAKDERDIQV
ADDKDKDEDEREGAEAGSKDDEESPVSSLDSSGEELKEKEGVDEDDSNTP
ASVSFSASLARAAGTASAAFSSSMATAPLPSSASLPSPEEPNPFEPTTPS
SPPSSPPSSSETPEAKPRWSFPSSSSSSSSSSSSGAPDPWWKMKYLELVE
GTSFDPMEEGKRRSIFGYYQREAEEVQDLPFLPGGDPGEEVELPVFSRAQ
FVNTTWTIGIVGGGEGGWNPFKKVRRTRVFFREDGRVIWVNGGNIGEWSY
DAKSNVFRFGRETFLSWNGRRSFPTLLTEDRSLYYMQGFVIGWAPFKPLS
VYGLWQMYRDDVSAEERGTAPWEEEDEGAEEGENGEKKRIVRG*

mRNA from alignment at chr5:155383..158054-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00410.1 ID=NO05G00410.1|Name=NO05G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2672bp|location=Sequence derived from alignment at chr5:155383..158054- (Nannochloropsis oceanica)
ATGGCCAGGAGACGGACACGGACGAAGCAAATGACCACCAAGGCCACGGC
AGGAGGCATACTATTGGCGTGTTGCTCTGGTAATTTCTGTGGAGAGATTG
TAGAATGGAGAGAGACCTCAGTGTTGCGTGCTACGTGCATGCATCATCAC
CCCTTCAACATTACGCCTCTCCCCTCACCTACCCTCCCTACCTCTCTCCC
TTCCTCACCTAATTATCAGTTAGCGCTTTCTTCTGGGGCAGAAACCCCCC
TTCATCGTCCTTGTCCTCACGGCAGGCTTGGCGTGCATCAAATCGTCACC
ACTTCAGACCACCCTCTTTCTCCCCCTCCTCCTCCGCCTCCATATGGCTC
CACTCATCGTTATCACCCAGCGGCGACAGCTGCAGCAGCACCATCAGAAG
CAGTTGTTGTAGAAGACGTCTTTCCTTCTCCTCCACCGCCATCGCCTCCA
TCAAAAACGACGACCAACAACAAGAGCCCAACAGAGATACAGCACCATCC
TCTCCCCCACCCTCCACCCCTGCCTCCTCAGCCTCCTCCTCCTCCTCCCC
CCCCTCAGCAGATGTATCGCAGCTTCCACCTCCATCCTTATTATCATCAT
CACTAGAAGAAGACGCAGCAGCAGCAGCCTCGAGAGATCCCTACACCGGC
ACATACTCCACCTACGGTTATCCCCCTCCCCTTCCATCCTATTTCTACCC
TCCTCCTGCCTCCTTCTACCCTCCTCCTCCTCCCCCTTCATCCCTCGATC
CCCCTGCTTCCTCCCTCTCCACACCCTTATCATCGTCCTCCTCTGCTGCT
GCTGACGGTGATAGCAGCGTCACCTCCACGGCGTCTGCTCCTCCTTCACC
GTACCCTGATCCTTATGCTGGCTTTTACTACCCTCCTCCCTCCTTCTATC
CTCCTCCGCCCCCTCCTCCTCCATCATCATCTTCGCAAGACGAAGGCATG
TCCCAGGAGCAGCAGCAACAGCGGTGGATGGACGCAGCTTATGGCTCTTC
TGTTTCCAACCAAACCGTCGCAGGAGCAGGGGGAGGGGAAGGAGTGATGG
ACGGGTGGCAAGATGCCTATGGTCGGAGTATGTATGGCTATTATCCCCCT
CCGCCTCCTTACGGATATGACCCATACTACGCTGCTGCTGCTGCTGCTTC
GTGGCAGGAGGAGGAGGAAGGATGGAGCGAGGGCGAGGACGAGGACGAGG
ACGAGGAGGAGTGGTGGAGTGATGAGGAGGATGATGGTTATTACAGTGAC
GAGGAGGATGAGGAGGATGAGGGCTGGAGGGAGGAGGAGGAAGAGGAGTG
GAGGAGGTCGAAGGCAGGGATGGAAGACGATGTTGAGGAGGAGGGAGGGA
GGGATGGCGGGTTGGATGATCTGATAAGTGAGGCGATTACCTCGGTGACG
CTTGGGGAGAAGGCCGAGGATGAGGGGGACGAAGGAAGCGAGATAGGGAA
GGAGAAAGGGAAGGAAGGGGAGCAGACACAGTCTATGTCGCAGATGGGGG
AGGAGGTGGCGGTGGAGGAGTCGGAGGGAGTGAAGGAGGAAGAGGAGGAG
GGGGCACTTTCAGTTCGAAAGGAGGGCGAGGAGGAGGGGCAGGAGCAACC
GCAGCAAGAAGCAGCCAAAGATGAAAGGGATATTCAAGTCGCTGATGACA
AAGATAAGGATGAGGACGAGAGGGAAGGAGCGGAGGCAGGAAGCAAGGAT
GATGAAGAATCCCCTGTGTCTTCCCTTGATTCCTCTGGCGAGGAACTAAA
AGAGAAGGAGGGCGTGGACGAAGACGACAGCAACACTCCCGCTTCAGTCT
CCTTTTCTGCCTCCCTTGCCCGCGCTGCCGGCACGGCCTCTGCTGCCTTC
TCCTCCTCCATGGCCACTGCCCCTCTCCCCTCCTCCGCCTCCCTCCCTTC
CCCCGAAGAACCCAACCCCTTCGAACCCACGACCCCTTCCTCCCCCCCTT
CCTCCCCCCCTTCCTCCTCGGAGACGCCTGAAGCCAAGCCCAGGTGGTCC
TTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCAGCGGGGCCCC
CGATCCTTGGTGGAAAATGAAGTATTTGGAGCTGGTGGAGGGCACATCAT
TTGACCCTATGGAGGAAGGAAAAAGGCGGTCAATTTTTGGGTATTATCAA
AGAGAGGCGGAGGAGGTGCAGGACCTGCCGTTCTTGCCAGGAGGTGACCC
GGGGGAGGAGGTTGAGCTTCCTGTCTTCAGTCGTGCGCAATTCGTGAATA
CGACGTGGACGATTGGGATAGTAGGAGGGGGGGAGGGGGGGTGGAATCCG
TTTAAAAAAGTGCGGAGGACGAGGGTGTTTTTCAGGGAGGACGGACGAGT
GATTTGGGTGAATGGGGGAAACATCGGGGAGTGGAGTTATGACGCGAAGA
GCAACGTGTTTAGGTTTGGAAGGGAGACTTTTTTAAGTTGGAATGGAAGG
AGGAGTTTCCCGACGCTGCTGACGGAGGACCGGTCGCTTTATTACATGCA
GGGCTTTGTGATTGGCTGGGCACCGTTTAAGCCATTGAGTGTGTATGGGC
TTTGGCAGATGTACCGGGATGACGTGAGTGCGGAGGAGCGAGGGACGGCA
CCGTGGGAGGAGGAAGATGAGGGGGCGGAGGAGGGGGAGAACGGGGAGAA
GAAGAGGATTGTGAGAGGGTAG

Coding sequence (CDS) from alignment at chr5:155383..158054-

>NO05G00410.1 ID=NO05G00410.1|Name=NO05G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at chr5:155383..158054- (Nannochloropsis oceanica)
ATGGCCAGGAGACGGACACGGACGAAGCAAATGACCACCAAGGCCACGGC
AGGAGGCATACTATTGGCGTGTTGCTCTGTTAGCGCTTTCTTCTGGGGCA
GAAACCCCCCTTCATCGTCCTTGTCCTCACGGCAGGCTTGGCGTGCATCA
AATCGTCACCACTTCAGACCACCCTCTTTCTCCCCCTCCTCCTCCGCCTC
CATATGGCTCCACTCATCGTTATCACCCAGCGGCGACAGCTGCAGCAGCA
CCATCAGAAGCAGTTGTTGTAGAAGACGTCTTTCCTTCTCCTCCACCGCC
ATCGCCTCCATCAAAAACGACGACCAACAACAAGAGCCCAACAGAGATAC
AGCACCATCCTCTCCCCCACCCTCCACCCCTGCCTCCTCAGCCTCCTCCT
CCTCCTCCCCCCCCTCAGCAGATGTATCGCAGCTTCCACCTCCATCCTTA
TTATCATCATCACTAGAAGAAGACGCAGCAGCAGCAGCCTCGAGAGATCC
CTACACCGGCACATACTCCACCTACGGTTATCCCCCTCCCCTTCCATCCT
ATTTCTACCCTCCTCCTGCCTCCTTCTACCCTCCTCCTCCTCCCCCTTCA
TCCCTCGATCCCCCTGCTTCCTCCCTCTCCACACCCTTATCATCGTCCTC
CTCTGCTGCTGCTGACGGTGATAGCAGCGTCACCTCCACGGCGTCTGCTC
CTCCTTCACCGTACCCTGATCCTTATGCTGGCTTTTACTACCCTCCTCCC
TCCTTCTATCCTCCTCCGCCCCCTCCTCCTCCATCATCATCTTCGCAAGA
CGAAGGCATGTCCCAGGAGCAGCAGCAACAGCGGTGGATGGACGCAGCTT
ATGGCTCTTCTGTTTCCAACCAAACCGTCGCAGGAGCAGGGGGAGGGGAA
GGAGTGATGGACGGGTGGCAAGATGCCTATGGTCGGAGTATGTATGGCTA
TTATCCCCCTCCGCCTCCTTACGGATATGACCCATACTACGCTGCTGCTG
CTGCTGCTTCGTGGCAGGAGGAGGAGGAAGGATGGAGCGAGGGCGAGGAC
GAGGACGAGGACGAGGAGGAGTGGTGGAGTGATGAGGAGGATGATGGTTA
TTACAGTGACGAGGAGGATGAGGAGGATGAGGGCTGGAGGGAGGAGGAGG
AAGAGGAGTGGAGGAGGTCGAAGGCAGGGATGGAAGACGATGTTGAGGAG
GAGGGAGGGAGGGATGGCGGGTTGGATGATCTGATAAGTGAGGCGATTAC
CTCGGTGACGCTTGGGGAGAAGGCCGAGGATGAGGGGGACGAAGGAAGCG
AGATAGGGAAGGAGAAAGGGAAGGAAGGGGAGCAGACACAGTCTATGTCG
CAGATGGGGGAGGAGGTGGCGGTGGAGGAGTCGGAGGGAGTGAAGGAGGA
AGAGGAGGAGGGGGCACTTTCAGTTCGAAAGGAGGGCGAGGAGGAGGGGC
AGGAGCAACCGCAGCAAGAAGCAGCCAAAGATGAAAGGGATATTCAAGTC
GCTGATGACAAAGATAAGGATGAGGACGAGAGGGAAGGAGCGGAGGCAGG
AAGCAAGGATGATGAAGAATCCCCTGTGTCTTCCCTTGATTCCTCTGGCG
AGGAACTAAAAGAGAAGGAGGGCGTGGACGAAGACGACAGCAACACTCCC
GCTTCAGTCTCCTTTTCTGCCTCCCTTGCCCGCGCTGCCGGCACGGCCTC
TGCTGCCTTCTCCTCCTCCATGGCCACTGCCCCTCTCCCCTCCTCCGCCT
CCCTCCCTTCCCCCGAAGAACCCAACCCCTTCGAACCCACGACCCCTTCC
TCCCCCCCTTCCTCCCCCCCTTCCTCCTCGGAGACGCCTGAAGCCAAGCC
CAGGTGGTCCTTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCA
GCGGGGCCCCCGATCCTTGGTGGAAAATGAAGTATTTGGAGCTGGTGGAG
GGCACATCATTTGACCCTATGGAGGAAGGAAAAAGGCGGTCAATTTTTGG
GTATTATCAAAGAGAGGCGGAGGAGGTGCAGGACCTGCCGTTCTTGCCAG
GAGGTGACCCGGGGGAGGAGGTTGAGCTTCCTGTCTTCAGTCGTGCGCAA
TTCGTGAATACGACGTGGACGATTGGGATAGTAGGAGGGGGGGAGGGGGG
GTGGAATCCGTTTAAAAAAGTGCGGAGGACGAGGGTGTTTTTCAGGGAGG
ACGGACGAGTGATTTGGGTGAATGGGGGAAACATCGGGGAGTGGAGTTAT
GACGCGAAGAGCAACGTGTTTAGGTTTGGAAGGGAGACTTTTTTAAGTTG
GAATGGAAGGAGGAGTTTCCCGACGCTGCTGACGGAGGACCGGTCGCTTT
ATTACATGCAGGGCTTTGTGATTGGCTGGGCACCGTTTAAGCCATTGAGT
GTGTATGGGCTTTGGCAGATGTACCGGGATGACGTGAGTGCGGAGGAGCG
AGGGACGGCACCGTGGGAGGAGGAAGATGAGGGGGCGGAGGAGGGGGAGA
ACGGGGAGAAGAAGAGGATTGTGAGAGGGTAG

Synonyms

Publications