NO05G00370.1, NO05G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00370.1
Unique NameNO05G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2272
Alignment locationchr5:142775..145046 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:142775..145046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00370NO05G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00370.1NO05G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00370.1.cds1NO05G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00370.1 ID=NO05G00370.1|Name=NO05G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp
AAAATGGACGTGTGATAGATGGTATAGTACCTCATTAGAGGAATGAGGCA
TCGAAGGATTTGTGTGCAAGAAAGAATAGAAATTGGTTGAAGGGGGGAAG
AAATTACATTTAATCGTTCGTGTCAGTCGTAAGGCGGGCATGAAGAAGGT
GAAAAGAAGGTGAAGGGGACTTCGAGGTGGAGAGGCGAAAGGGCGAATCA
GTCGAAGGAGAAACACATGGTTTGAAAGAGTCAGAGAAATTAATTATAAA
GGGCGAATGAATATGAGGGTTTGTGGGCATGTGAACATTGATTCATCAGC
AGGAATGGGGGAATAGGGAGAGAGGAGCTTGTACTCAGTGAGCATCCAGT
GTGTCCGTGGATAAATAGCATACACCCTGCTAAAGTATAAGCCATCCGTG
GTTAGCAAGTGTGAGTACAACGCAAAAGCGGCATAAAGTAAAAGGGGAGA
GGCCGTCTAAGTCGACACTCAAAGTAAGTAATCAACCAGCAGAAGTTTTT
ACACAATACCGGTTTTCATATCATGAATCGTCTTCACACCATCAATGGAT
GCACAAATGCGGCGGTAAAGTGTGAATGGCCCATGCAAGTGCTACCTTGG
TACGCCATAATTTTAGGATTGTAGGAAACTCCAAGAAAGATTATGAAGTC
CTTCTGGCCATACGGCGATGATTTGGGGGCCAGCCTGCAAAATTTTTGAC
ACCTCCCTCTTACATACCACAGCCATGACACATGCAACGTGCGTCTATGC
CTTTGGTCCACCTATCTTCGCTAAAGCTATGTGCTTTACCGGTTTGCACG
CACACGTCCGTTTGGCCCGGGGTTGGCCCAACCACGAGAGAAAAAGGATC
GCTCGCTTGGGGGCGTAGCCAGCAAGAAAGACAGGAAGGAAGCATGTCCT
CAATCCAACCACCGTCACTCTACCTTGTCATGGAAACCCACACGGCACCA
CACAATACACAATCACTCTTACAGGGGCCTTCCTGGCCTGGGCTCCGCCG
TGGCCTGGTTACCTTGCTGCTCCTTCTATCTTAGCTCCTTGCCTCCAGCA
ATAGTAGCCATGCCCGGTGTCATTCTCGCCCCTCCTCCCCCGTCCTCCCA
AACACGCCTGGCTCGCGCGTCAACCGCCACCCAGCCCTTGAGCGTTCCCT
CGAATAATAACAAGCCTCGGGGGACCGGGCACCATCACGGTCACCGGCAC
TCCTCCTCTCCCTCTGATCACTACTCCGGCTCTCCCGGTCACGGCGGAAT
GGGTTCGTTGATTCGTCTCGCGCAAGTCATGTTCGAGCACTGGCAGAACA
AGAATGCGCCATCCTCGTATTCTTCCTCTGCCCTTCCGTCCACCCCACCG
AAAACTATGGGTGGGGGAGGAACGCGCATTCCTCCGGGGTCTGCTGGCCG
GGTTGGTGCGGGAGGAGGGGAAAGGAAGAAAAAGAGTGTTTTGGGGGCAG
CAGGTGCATCAGAAGGAGGAGGAGGCAGAGGGGCGGGCAAGAAGGCGTTA
GGTCCTGCCCTTCCGCCCCGTCCTCGTTCCAAGAGTGAGGGGCATACGCC
TGTCCCTTCCACTGCTGCTGCTGCGGCCGCTGCTGCCGCTGCTTCCTCCT
AGCCCGTCGGTGTCTTGGTTGAAAAAAAGAAAGAGGAAAAAGCATGGAAG
CGAGGAATGAATAGAGGAGTACTCTTCATGGTCAGTCCCTTTCATGTGGA
GAGGGAAAGGGAAGAGATAAGGAGAAGAGTTAGGGGCGCGAGACTGAGCA
GTATGACGAAAAGGAGTGTGAAGGCGGTGGTCGACAAACACAAAGAAAAA
GATTTGTAGTAAGGTGAATCAAAATCAAGACAAAAGTCTATGTCACGACC
CGATGCATCGAGGAGGAAGGAAGGGAGGAAGGAAAGGGGATGGGCAGGGG
GTTGGCAGGTTCTTCAGGAAAGTAGGAAGGGAGGAAGCGCAGGCCTTGGT
CTCACTGTACAGTACAAGATGATGAGGAGGAGGTCGAGTAGTATAAGTTG
TTAGTTGTGGAGTCGGTGGGATTGTGGTTGTGCTTGTGGACGATCATTTG
CTTGTTTGTGGGTTAAGTTGTCCTCTATCCCTCTCCTGGAAGTGGTGGTA
TGGTGGTATGTACATGAATATATATACGTGGTGTCCCGCTTGGAGGGCTC
TTGATTTGCTCGGCGGGAGAGAACGGAGATAGATTGGGCGGCAACCCACT
ATAACCACCATATCCGGTGCTACCACCTGTTTCAAACACACAAAACAGAC
CAACAATCGACAGCACTGTGAT
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protein sequence of NO05G00370.1

>NO05G00370.1-protein ID=NO05G00370.1-protein|Name=NO05G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MPGVILAPPPPSSQTRLARASTATQPLSVPSNNNKPRGTGHHHGHRHSSS
PSDHYSGSPGHGGMGSLIRLAQVMFEHWQNKNAPSSYSSSALPSTPPKTM
GGGGTRIPPGSAGRVGAGGGERKKKSVLGAAGASEGGGGRGAGKKALGPA
LPPRPRSKSEGHTPVPSTAAAAAAAAAASS*
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mRNA from alignment at chr5:142775..145046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00370.1 ID=NO05G00370.1|Name=NO05G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp|location=Sequence derived from alignment at chr5:142775..145046- (Nannochloropsis oceanica)
AAAATGGACGTGTGATAGATGGTATAGTACCTCATTAGAGGAATGAGGCA
TCGAAGGATTTGTGTGCAAGAAAGAATAGAAATTGGTTGAAGGGGGGAAG
AAATTACATTTAATCGTTCGTGTCAGTCGTAAGGCGGGCATGAAGAAGGT
GAAAAGAAGGTGAAGGGGACTTCGAGGTGGAGAGGCGAAAGGGCGAATCA
GTCGAAGGAGAAACACATGGTTTGAAAGAGTCAGAGAAATTAATTATAAA
GGGCGAATGAATATGAGGGTTTGTGGGCATGTGAACATTGATTCATCAGC
AGGAATGGGGGAATAGGGAGAGAGGAGCTTGTACTCAGTGAGCATCCAGT
GTGTCCGTGGATAAATAGCATACACCCTGCTAAAGTATAAGCCATCCGTG
GTTAGCAAGTGTGAGTACAACGCAAAAGCGGCATAAAGTAAAAGGGGAGA
GGCCGTCTAAGTCGACACTCAAAGTAAGTAATCAACCAGCAGAAGTTTTT
ACACAATACCGGTTTTCATATCATGAATCGTCTTCACACCATCAATGGAT
GCACAAATGCGGCGGTAAAGTGTGAATGGCCCATGCAAGTGCTACCTTGG
TACGCCATAATTTTAGGATTGTAGGAAACTCCAAGAAAGATTATGAAGTC
CTTCTGGCCATACGGCGATGATTTGGGGGCCAGCCTGCAAAATTTTTGAC
ACCTCCCTCTTACATACCACAGCCATGACACATGCAACGTGCGTCTATGC
CTTTGGTCCACCTATCTTCGCTAAAGCTATGTGCTTTACCGGTTTGCACG
CACACGTCCGTTTGGCCCGGGGTTGGCCCAACCACGAGAGAAAAAGGATC
GCTCGCTTGGGGGCGTAGCCAGCAAGAAAGACAGGAAGGAAGCATGTCCT
CAATCCAACCACCGTCACTCTACCTTGTCATGGAAACCCACACGGCACCA
CACAATACACAATCACTCTTACAGGGGCCTTCCTGGCCTGGGCTCCGCCG
TGGCCTGGTTACCTTGCTGCTCCTTCTATCTTAGCTCCTTGCCTCCAGCA
ATAGTAGCCATGCCCGGTGTCATTCTCGCCCCTCCTCCCCCGTCCTCCCA
AACACGCCTGGCTCGCGCGTCAACCGCCACCCAGCCCTTGAGCGTTCCCT
CGAATAATAACAAGCCTCGGGGGACCGGGCACCATCACGGTCACCGGCAC
TCCTCCTCTCCCTCTGATCACTACTCCGGCTCTCCCGGTCACGGCGGAAT
GGGTTCGTTGATTCGTCTCGCGCAAGTCATGTTCGAGCACTGGCAGAACA
AGAATGCGCCATCCTCGTATTCTTCCTCTGCCCTTCCGTCCACCCCACCG
AAAACTATGGGTGGGGGAGGAACGCGCATTCCTCCGGGGTCTGCTGGCCG
GGTTGGTGCGGGAGGAGGGGAAAGGAAGAAAAAGAGTGTTTTGGGGGCAG
CAGGTGCATCAGAAGGAGGAGGAGGCAGAGGGGCGGGCAAGAAGGCGTTA
GGTCCTGCCCTTCCGCCCCGTCCTCGTTCCAAGAGTGAGGGGCATACGCC
TGTCCCTTCCACTGCTGCTGCTGCGGCCGCTGCTGCCGCTGCTTCCTCCT
AGCCCGTCGGTGTCTTGGTTGAAAAAAAGAAAGAGGAAAAAGCATGGAAG
CGAGGAATGAATAGAGGAGTACTCTTCATGGTCAGTCCCTTTCATGTGGA
GAGGGAAAGGGAAGAGATAAGGAGAAGAGTTAGGGGCGCGAGACTGAGCA
GTATGACGAAAAGGAGTGTGAAGGCGGTGGTCGACAAACACAAAGAAAAA
GATTTGTAGTAAGGTGAATCAAAATCAAGACAAAAGTCTATGTCACGACC
CGATGCATCGAGGAGGAAGGAAGGGAGGAAGGAAAGGGGATGGGCAGGGG
GTTGGCAGGTTCTTCAGGAAAGTAGGAAGGGAGGAAGCGCAGGCCTTGGT
CTCACTGTACAGTACAAGATGATGAGGAGGAGGTCGAGTAGTATAAGTTG
TTAGTTGTGGAGTCGGTGGGATTGTGGTTGTGCTTGTGGACGATCATTTG
CTTGTTTGTGGGTTAAGTTGTCCTCTATCCCTCTCCTGGAAGTGGTGGTA
TGGTGGTATGTACATGAATATATATACGTGGTGTCCCGCTTGGAGGGCTC
TTGATTTGCTCGGCGGGAGAGAACGGAGATAGATTGGGCGGCAACCCACT
ATAACCACCATATCCGGTGCTACCACCTGTTTCAAACACACAAAACAGAC
CAACAATCGACAGCACTGTGAT
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Coding sequence (CDS) from alignment at chr5:142775..145046-

>NO05G00370.1 ID=NO05G00370.1|Name=NO05G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr5:142775..145046- (Nannochloropsis oceanica)
ATGCCCGGTGTCATTCTCGCCCCTCCTCCCCCGTCCTCCCAAACACGCCT
GGCTCGCGCGTCAACCGCCACCCAGCCCTTGAGCGTTCCCTCGAATAATA
ACAAGCCTCGGGGGACCGGGCACCATCACGGTCACCGGCACTCCTCCTCT
CCCTCTGATCACTACTCCGGCTCTCCCGGTCACGGCGGAATGGGTTCGTT
GATTCGTCTCGCGCAAGTCATGTTCGAGCACTGGCAGAACAAGAATGCGC
CATCCTCGTATTCTTCCTCTGCCCTTCCGTCCACCCCACCGAAAACTATG
GGTGGGGGAGGAACGCGCATTCCTCCGGGGTCTGCTGGCCGGGTTGGTGC
GGGAGGAGGGGAAAGGAAGAAAAAGAGTGTTTTGGGGGCAGCAGGTGCAT
CAGAAGGAGGAGGAGGCAGAGGGGCGGGCAAGAAGGCGTTAGGTCCTGCC
CTTCCGCCCCGTCCTCGTTCCAAGAGTGAGGGGCATACGCCTGTCCCTTC
CACTGCTGCTGCTGCGGCCGCTGCTGCCGCTGCTTCCTCCTAG
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Synonyms
Publications