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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:88974..93597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00200.4 vs.
Match: XP_005825439.1 (hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]; EKX38459.1 hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]) HSP 1 Score: 122.5 bits (306), Expect = 4.400e-24 Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0
Query: 416 FDVVLDAPNIAYYGQNFGDGRFNFNQIDIVLKALKAQGKRAFLVIPVKYTSRRIRDHVHREEGQGRGGGRVRALDDEETAMLERWTDEGIVYRIPRGQLDDLYWMYATVAARSDTASSPMIAISNDCMRDHWLDLLEARPFLRWKTTQVL 566
F VV+D PN+AY QNF G F+++QIDIV+ L+ +G++ +++P KY I +H R +G + +E +++RW EG + P G DD YWM +TV +T ++ND MRDH L LL+ RPFLRWKTT+++
Sbjct: 28 FSVVVDGPNVAYSKQNFETGCFSYHQIDIVVNKLREEGEKVLVLLPYKYVQPIIPNHA-RHQGHLNFSTAQHVVTGDEMEIIDRWNAEGCLKISPHGSNDDWYWMLSTVIDEGETVR----VVTNDQMRDHRLALLDPRPFLRWKTTRII 172
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00200.4 ID=NO05G00200.4|Name=NO05G00200.4|organism=Nannochloropsis oceanica|type=mRNA|length=2506bp ACAGGCACACAATCGACAGCACATCAACTGGCCAAGAAGCTTGCACAAGC GAGGCAAAGAGGTTGGAAAGGCCCTGACAGATGAAGTCCCGCCTTCAAAA ATATTATAAGTGAACACAATTTGCGTCAGTCATGCTAGAGAGAAGAAGGT GGCACGGCCGCGGGCGACCACCACCGGCACTAGTCCTCGTCCTCCTCGGA TGCTGCTTAAGGAGCCATGCCTTCCTACTCCTCCCCTACCCCACAACTCC CATACCAGCACCAGGAGCAGTATCATCGCATCACGAGTGGCATGAAAGAA AAAGTGTTACCGCATTGCCATTCCTTTCTAATATTTCGTCACCAGCATCA ATTCCATCATCACCACCATCGCAGCCTGCGCCTTCAACGCCGGGGAAACG AGACAAGATGGCGCCGCTGATCCAGCCCCTCGACGTTATGAAGACGTCAA GTCTCCGCAAGTCCCTCTTCCTTTCCGCAAAGGTCTTGAACCTAACGCGT GCTTTGGATACTTATGAGGAGATGAAAAAGCGAGGGCGGACTTTGACGCG GGACGAGTGCAACACATTGCTCTATGTTTGTCAGGAGGCAGGAGGTCCCG AGACGACGTGGAATGTCTACAAGGGTCTTAAAGGCGCTTTCGAGGAGGAC GAGAACACGGCCGTCGTCCTCATTCGCTCTCTGGCCGAGCAGGGGAGGCT GGAGGAGGCGCTGGCGATGATAGAGGGGAAGAACGACAAAGTCGGCAAAG GCAAAGCCCCTCCCAAGCTGAGGATGTACACGCCCGTCCTGACCCGGCTG TGGAAGGCGGGAAATGTGACAGCTGCCAAGGAGGTGTGGGAGGGTATGAT GGAAAGGGGGGCGGTGCCGAATGAAGAGCACGTGGTGTCCATGGTGGAGT GCTACGCGTCTCAAGGACCGACCGTCTTTCGGCAGCACCTCGACGACATC TCGTGCCTCTTGAATTTGTTGGGCAACAAGCTCGTGCTGAACGTGACGGA CGCAGGCATTGAGACCCTCCTGAACGCGTTCCCGTCCGGCGGTCGTGGTG GTGGAAAGGTAGCCGCAGCCCGCGTGCGCATACCCGGAAGTGGGGTGTGT CCTCATTGCCAGGGACAGTTGCGGCCGTTACGATTAGACCAGGAGGAGAG GAAGGAGCTGAGGGAGAGGCTCCTTGTCCTGGCGGAGGAGAAACAAGCAG CCTGGAAGAGCGCGGGGAAACTCGTCCTCTCCTCTCTGGCCTCCCCTGGT AGCGGCACCAACGGCTCCTCCAACGGCTCCTCCAACGGCGCCAGTGGCAG TGACAATAACGGGCCGTCCCCCTCGAAAATCATCTCGTTGAGGGCATTAG AGGCCTGGCTGAATGCCCGCCCCCCTTTTGACGTGGTCCTCGACGCCCCC AACATTGCTTATTACGGACAGAACTTCGGGGACGGGCGCTTTAATTTCAA CCAGATCGATATAGTGCTGAAAGCCTTGAAAGCACAGGGCAAACGTGCCT TCCTGGTCATCCCTGTCAAGTACACGAGTCGCCGGATCCGGGACCACGTT CATCGGGAAGAAGGGCAGGGAAGGGGAGGGGGGAGGGTACGGGCACTGGA CGATGAAGAGACCGCCATGCTCGAGCGTTGGACCGATGAAGGCATTGTGT ACCGCATCCCACGGGGACAACTCGATGACCTCTACTGGATGTATGCCACG GTGGCCGCGCGGAGCGACACGGCCTCCTCCCCTATGATCGCCATCTCTAA CGACTGCATGCGCGATCACTGGCTCGACCTTCTAGAAGCCCGGCCCTTCC TTCGCTGGAAAACCACCCAGGTACTTTCGTCCTCCCTCCCCTCTTCTCTT TCCTCGCCTTGTGACTAAAGATGACCCCTTCCTCCCTCCCTTTCTCCGCC CCTCCCTCAGGTGCAATCTTACCGTTTCGATTACTCAGTCGAAGACAACA TGCCCCTCCGAGTGACCTTCAGCGAGATGGGATTCTCGCGGGAGGCACAA CGCACTGCCTCATCCTCCTTCTCCTCCTCCTCCTTCTCCTCCTCCTCCTC GATCGCTCCATCATCGGATGCCGCAACAATAGTTACATCCGGAGGGGACT GTCTACACCTCCCTTCAGACAAGGCGGAAGACGAATGGCTGTGTCTCGAC TTCGGGCAAGCACGGAAAGAGCTAGATGCTCTGATAGCAGCAGAAGGAAA GGCCTCGAAAAAGGGCAGTAAAGATGCAAGTACCACGAGGGGCCTCGGCT TCTTCGTCCGTCCTCGTCCAGGAGGGCTGTATGCGGGATGGGGTGGGACA AAGAAGAGGAAAGGGAAGGATGGGCATGAAGGAGGAGCAGGGGGAGGGGG AGAGGAAGGGGTTAGATAATCGTTTGGTTGGTGAAGGCAGATGACCAAGT GCCGTGAGAAACGAAATCTAGACATACGCGTAACGTAATGCCTTAAATTT ATCCAAATTAATTAGACTCTAGACTCCAGCAAAACATTGCAGCAATAGCT TCGAAA back to topprotein sequence of NO05G00200.4 >NO05G00200.4-protein ID=NO05G00200.4-protein|Name=NO05G00200.4|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp MLERRRWHGRGRPPPALVLVLLGCCLRSHAFLLLPYPTTPIPAPGAVSSH HEWHERKSVTALPFLSNISSPASIPSSPPSQPAPSTPGKRDKMAPLIQPL DVMKTSSLRKSLFLSAKVLNLTRALDTYEEMKKRGRTLTRDECNTLLYVC QEAGGPETTWNVYKGLKGAFEEDENTAVVLIRSLAEQGRLEEALAMIEGK NDKVGKGKAPPKLRMYTPVLTRLWKAGNVTAAKEVWEGMMERGAVPNEEH VVSMVECYASQGPTVFRQHLDDISCLLNLLGNKLVLNVTDAGIETLLNAF PSGGRGGGKVAAARVRIPGSGVCPHCQGQLRPLRLDQEERKELRERLLVL AEEKQAAWKSAGKLVLSSLASPGSGTNGSSNGSSNGASGSDNNGPSPSKI ISLRALEAWLNARPPFDVVLDAPNIAYYGQNFGDGRFNFNQIDIVLKALK AQGKRAFLVIPVKYTSRRIRDHVHREEGQGRGGGRVRALDDEETAMLERW TDEGIVYRIPRGQLDDLYWMYATVAARSDTASSPMIAISNDCMRDHWLDL LEARPFLRWKTTQVLSSSLPSSLSSPCD* back to topmRNA from alignment at chr5:88974..93597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00200.4 ID=NO05G00200.4|Name=NO05G00200.4|organism=Nannochloropsis oceanica|type=mRNA|length=4624bp|location=Sequence derived from alignment at chr5:88974..93597- (Nannochloropsis oceanica) ACAGGCACACAATCGACAGCACATCAACTGGCCAAGAAGCTTGCACAAGC
GAGGCAAAGAGGTTGGAAAGGCCCTGACAGGTCGGCATGTTTTCTCCCCT
TCCTTTTTCCTGCCCTCCCTCAACCGCCTCTTGCCCCTGCTTATGCCCTC
CCACCTCCACCTTCCCAATCACTCCCTTTTATTAACCAGATGAAGTCCCG
CCTTCAAAAATATTATAAGTGAACACAATTTGCGTCAGTCATGCTAGAGA
GAAGAAGGTGGCACGGCCGCGGGCGACCACCACCGGCACTAGTCCTCGTC
CTCCTCGGATGCTGCTTAAGGAGCCATGCCTTCCTACTCCTCCCCTACCC
CACAACTCCCATACCAGCACCAGGAGCAGTATCATCGCATCACGAGTGGC
ATGAAAGAAAAAGTGTTACCGCATTGCCATTCCTTTCTAATATTTCGTCA
CCAGCATCAATTCCATCATCACCACCATCGCAGCCTGCGCCTTCAACGCC
GGGGAAACGAGACAAGATGGCGCCGCTGGTAAGTGCATGCATTAACACGT
GTGTGAGTGAAAGTGTGTTGCATTAATTCTTGGATTTGAATTAGTGCTTT
GGAATGTTCGTTTGATGTATCGTGCGACACGTGCGCACTTACTTGTTAAT
CACCATCCCCCTCGCCTGCTCATTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCATCCCTCCTTCCTTCCTTCCCTTTCTTCTTGGCCCCATT
ATCCCGTAGATCCAGCCCCTCGACGTTATGAAGACGTCAAGTCTCCGCAA
GTCCCTCTTCCTTTCCGCAAAGGTCTTGAACCTAACGCGTGCTTTGGATA
CTTATGAGGTAAGGAGGCAGGGAGGAAGGAGAAGAAGGAATGAGGGAAGG
TGGGGATGGAGAAGGTCAGCGATCGAGTCACGAGGGAGGGAGGGAGGAAG
AGAGGGAGAGAGGGAGTGAGTATTGAGTATGACACGTGGTTATCTGCTCA
CTAGTTTCCTACACAACACACGCCTTGCTCATACCCTTAATAAATATTCG
CACATCTCTAATACACACCTCTTATAAAAATGCACATCCGTCTAATCTAA
ACAGGAGATGAAAAAGCGAGGGCGGACTTTGACGCGGGACGAGTGCAACA
CATTGCTCTATGTTTGTCAGGAGGCAGGAGGTCCCGAGGTGAGAACCACT
CGAGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGTAA
GAGGAGCAACCTATCCCATGCATGCATACCTATACCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTCTATCAGACGACGTGGAATGTCTACAAGGGTCTTAA
AGGCGCTTTCGAGGAGGACGAGAACACGGCCGTCGTCCTCATTCGCTCTC
TGGCCGAGCAGGGGAGGCTGGAGGAGGCGCTGGCGATGATAGAGGGGAAG
AACGACAAAGTCGGTAAGAGGAGGAAGGGGAGGTAGGCAGGGGAGGATGA
GTAGGTGGAGAGAAAGGGGAGGGGGCCAGCTGATGGTTTCCATCCCCGGC
CGCCTGTACGCTCGAGGTGACTGAAGGAGCTCGGAGTGGAAGCGATGCTA
CTGCTCACTCCCCTCGTGTCCCTCCCTCCCTCTCTCCCTCCCTCTCTCCC
TCCCTAGACTCGAAGAGGTGTGTCGTCTTGCTTTTCATGCCCTCCCTCCT
TCCCTCCCTCCCTCCTTCCCTCCTTCCTTCCTTCCCTCCCTCCCTCCCTC
CTTCCTTCCCTCCCTCCCTCCCTCCCAGGCAAAGGCAAAGCCCCTCCCAA
GCTGAGGATGTACACGCCCGTCCTGACCCGGCTGTGGAAGGCGGGAAATG
TGACAGCTGCCAAGGAGGTGTGGGAGGGTATGATGGAAAGGGGGGCGGTG
CCGAATGAAGAGCACGTGGTGTCCATGGTATGAAGGGAGGGAGGGAGAGA
GGGAGGGAGGGAGAGGAGGATCGAATCGAATCGACATGATAGAATGGGCG
CCTTGAGAACGTATGCACGCTTGCCCATGATGTTTTCCTCCCTTTCCCCC
CTCCGTCCCTCCCTCTCTTCCTCCAAGGTGGAGTGCTACGCGTCTCAAGG
ACCGACCGTCTTTCGGCAGCACCTCGACGACATCTCGTGCCTCTTGAATT
TGTTGGGCAACAAGCTCGTGCTGAACGTGACGGACGCAGGTAGGTAGGTA
GGTGGGTAGGGAGGGAGGAAGGGAGGGAGGGAGGAAGGAGGGGAAGGAGA
TCTTTCGTGTGGGTATGAGAAGACACCGACCTGGGCAGCTGCTGATTGGC
GTGCCCATGCCACTGATACCTTTCTTCCCTCCAACCGTGCGATATTGTCC
ACGAATCATCACTGATGCCTTCCTTTCCTCCCTCTTCCCCTCCCTCTCTC
CCTCCAGGCATTGAGACCCTCCTGAACGCGTTCCCGTCCGGCGGTCGTGG
TGGTGGAAAGGTAGCCGCAGCCCGCGTGCGCATACCCGGAAGTGGGGTGT
GTCCTCATTGCCAGGGACAGTTGCGGCCGTTACGATTAGACCAGGAGGAG
AGGAAGGAGCTGAGGGAGAGGTGAGGATGGGGGGAAGGAGGGAGGATGGC
AAGGTGGCGAAGAGGGTCAGAAACATCACGTCGACAGAAGCCTTGCTCGG
TGCTTCCCTCCCTTCCCTAACTCTCTCCTTTCCTCCTTCATTTAATTCTC
TCCTTCATCATAACCCCAGGCTCCTTGTCCTGGCGGAGGAGAAACAAGCA
GCCTGGAAGAGCGCGGGGAAACTCGTCCTCTCCTCTCTGGCCTCCCCTGG
TAGCGGCACCAACGGCTCCTCCAACGGCTCCTCCAACGGCGCCAGTGGCA
GTGACAATAACGGGCCGTCCCCCTCGAAAATCATCTCGTTGAGGGCATTA
GAGGTGGGTGAATACAAGCAAGAACGAGCCCTAGAGACAAGACTGAGCAT
CTCTCATCACCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCT
CCCTCTTTTATCCCTCAGGCCTGGCTGAATGCCCGCCCCCCTTTTGACGT
GGTCCTCGACGCCCCCAACATTGCTTATTACGGACAGAACTTCGGGGACG
GGCGCTTTAATTTCAACCAGATCGATATAGTGCTGAAAGCCTTGAAAGCA
CAGGTAGGTGTGTAGCGTGCGACGGCGCCCTCCCTCTCTCCCTCCCTTCC
TCCCTCCCTCCTTCCAACCAGCGATCATTTGGAAATATGTAATGAATGCC
CTGTTTCATCCCTTCCTCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCT
CCCTCCGCAGGGCAAACGTGCCTTCCTGGTCATCCCTGTCAAGTACACGA
GTCGCCGGATCCGGGACCACGTTCATCGGGAAGAAGGGCAGGGAAGGGGA
GGGGGGAGGGTACGGGCACTGGACGATGAAGAGACCGCCATGCTCGAGGT
AGAGGGGGAGGGAGGAAGGGAGGGAGGGAGGAAATGAGGGAACCACACCA
TATCTATAGGCGTCTTATTTAGATCACGAGGAGTACCGGCGTTCATCGAG
CCTTGCTCCCATTTACCTCCCCCCTTCCCTCCCTCCCAGCGTTGGACCGA
TGAAGGCATTGTGTACCGCATCCCACGGGGACAACTCGATGACCTCTACT
GGATGTATGCCACGGTGGCCGCGCGGTATGTTCGGAGGGAGGGAGCGAGG
GAGGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGGAAACACATGGCTGC
TCCCTGAAGCTGGCCTTTGACCTGTTCACAGGCTTATCCTCCCTCCCTCA
CTCCATCCCTCCCTCCATTTATCCCTCAGGAGCGACACGGCCTCCTCCCC
TATGATCGCCATCTCTAACGACTGCATGCGCGATCACTGGCTCGACCTTC
TAGAAGCCCGGCCCTTCCTTCGCTGGAAAACCACCCAGGTACTTTCGTCC
TCCCTCCCCTCTTCTCTTTCCTCGCCTTGTGACTAAAGATGACCCCTTCC
TCCCTCCCTTTCTCCGCCCCTCCCTCAGGTGCAATCTTACCGTTTCGATT
ACTCAGTCGAAGACAACATGCCCCTCCGAGTGACCTTCAGCGAGATGGGA
TTCTCGCGGGAGGCACAACGCACTGCCTCATCCTCCTTCTCCTCCTCCTC
CTTCTCCTCCTCCTCCTCGATCGCTCCATCATCGGATGCCGCAACAATAG
TTACATCCGGAGGGGACTGTCTACACCTCCCTTCAGACAAGGCGGAAGAC
GAATGGCTGTGTCTCGACTTCGGGCAAGCACGGAAAGAGCTAGATGCTCT
GATAGCAGCAGAAGGAAAGGCCTCGAAAAAGGGCAGTAAAGATGCAAGTA
CCACGAGGGGCCTCGGCTTCTTCGTCCGTCCTCGTCCAGGAGGGCTGTAT
GCGGGATGGGGTGGGACAAAGAAGAGGAAAGGGAAGGATGGGCATGAAGG
AGGAGCAGGGGGAGGGGGAGAGGAAGGGGTTAGATAATCGTTTGGTTGGT
GAAGGCAGATGACCAAGTGCCGTGAGAAACGAAATCTAGACATACGCGTA
ACGTAATGCCTTAAATTTATCCAAATTAATTAGACTCTAGACTCCAGCAA
AACATTGCAGCAATAGCTTCGAAA back to topCoding sequence (CDS) from alignment at chr5:88974..93597- >NO05G00200.4 ID=NO05G00200.4|Name=NO05G00200.4|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr5:88974..93597- (Nannochloropsis oceanica) ATGCTAGAGAGAAGAAGGTGGCACGGCCGCGGGCGACCACCACCGGCACT AGTCCTCGTCCTCCTCGGATGCTGCTTAAGGAGCCATGCCTTCCTACTCC TCCCCTACCCCACAACTCCCATACCAGCACCAGGAGCAGTATCATCGCAT CACGAGTGGCATGAAAGAAAAAGTGTTACCGCATTGCCATTCCTTTCTAA TATTTCGTCACCAGCATCAATTCCATCATCACCACCATCGCAGCCTGCGC CTTCAACGCCGGGGAAACGAGACAAGATGGCGCCGCTGATCCAGCCCCTC GACGTTATGAAGACGTCAAGTCTCCGCAAGTCCCTCTTCCTTTCCGCAAA GGTCTTGAACCTAACGCGTGCTTTGGATACTTATGAGGAGATGAAAAAGC GAGGGCGGACTTTGACGCGGGACGAGTGCAACACATTGCTCTATGTTTGT CAGGAGGCAGGAGGTCCCGAGACGACGTGGAATGTCTACAAGGGTCTTAA AGGCGCTTTCGAGGAGGACGAGAACACGGCCGTCGTCCTCATTCGCTCTC TGGCCGAGCAGGGGAGGCTGGAGGAGGCGCTGGCGATGATAGAGGGGAAG AACGACAAAGTCGGCAAAGGCAAAGCCCCTCCCAAGCTGAGGATGTACAC GCCCGTCCTGACCCGGCTGTGGAAGGCGGGAAATGTGACAGCTGCCAAGG AGGTGTGGGAGGGTATGATGGAAAGGGGGGCGGTGCCGAATGAAGAGCAC GTGGTGTCCATGGTGGAGTGCTACGCGTCTCAAGGACCGACCGTCTTTCG GCAGCACCTCGACGACATCTCGTGCCTCTTGAATTTGTTGGGCAACAAGC TCGTGCTGAACGTGACGGACGCAGGCATTGAGACCCTCCTGAACGCGTTC CCGTCCGGCGGTCGTGGTGGTGGAAAGGTAGCCGCAGCCCGCGTGCGCAT ACCCGGAAGTGGGGTGTGTCCTCATTGCCAGGGACAGTTGCGGCCGTTAC GATTAGACCAGGAGGAGAGGAAGGAGCTGAGGGAGAGGCTCCTTGTCCTG GCGGAGGAGAAACAAGCAGCCTGGAAGAGCGCGGGGAAACTCGTCCTCTC CTCTCTGGCCTCCCCTGGTAGCGGCACCAACGGCTCCTCCAACGGCTCCT CCAACGGCGCCAGTGGCAGTGACAATAACGGGCCGTCCCCCTCGAAAATC ATCTCGTTGAGGGCATTAGAGGCCTGGCTGAATGCCCGCCCCCCTTTTGA CGTGGTCCTCGACGCCCCCAACATTGCTTATTACGGACAGAACTTCGGGG ACGGGCGCTTTAATTTCAACCAGATCGATATAGTGCTGAAAGCCTTGAAA GCACAGGGCAAACGTGCCTTCCTGGTCATCCCTGTCAAGTACACGAGTCG CCGGATCCGGGACCACGTTCATCGGGAAGAAGGGCAGGGAAGGGGAGGGG GGAGGGTACGGGCACTGGACGATGAAGAGACCGCCATGCTCGAGCGTTGG ACCGATGAAGGCATTGTGTACCGCATCCCACGGGGACAACTCGATGACCT CTACTGGATGTATGCCACGGTGGCCGCGCGGAGCGACACGGCCTCCTCCC CTATGATCGCCATCTCTAACGACTGCATGCGCGATCACTGGCTCGACCTT CTAGAAGCCCGGCCCTTCCTTCGCTGGAAAACCACCCAGGTACTTTCGTC CTCCCTCCCCTCTTCTCTTTCCTCGCCTTGTGACTAA back to top
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