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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:88974..92906 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00200.2 vs.
Match: XP_005825439.1 (hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]; EKX38459.1 hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]) HSP 1 Score: 120.9 bits (302), Expect = 1.300e-23 Identity = 78/246 (31.71%), Postives = 119/246 (48.37%), Query Frame = 0
Query: 314 FDVVLDAPNIAYYGQNFGDGRFNFNQIDIVLKALKAQGKRAFLVIPVKYTSRRIRDHVHREEGQGRGGGRVRALDDEETAMLERWTDEGIVYRIPRGQLDDLYWMYATVAARSDTASSPMIAISNDCMRDHWLDLLEARPFLRWKTTQVQSYRFDYSVE--------DNMPLRVTFSEMGFSREAQRTASSSFSSSSFSSSSSIAPSSDAATIVTSGGDCLHLPSDKA-----------EDEWLCL 541
F VV+D PN+AY QNF G F+++QIDIV+ L+ +G++ +++P KY I +H R +G + +E +++RW EG + P G DD YWM +TV +T ++ND MRDH L LL+ RPFLRWKTT++ + F ++ E ++P S E QR++ F + + + GDC P++ A E +WLCL
Sbjct: 28 FSVVVDGPNVAYSKQNFETGCFSYHQIDIVVNKLREEGEKVLVLLPYKYVQPIIPNHA-RHQGHLNFSTAQHVVTGDEMEIIDRWNAEGCLKISPHGSNDDWYWMLSTVIDEGETVR----VVTNDQMRDHRLALLDPRPFLRWKTTRIIRFDFSHAWEPEKIANGTSDIPQVTLIQPPVISPEIQRSSDEEHMIWHFPIRTKVQEDEE------EDGDCEFNPTEAACASTTLVRKTEEGKWLCL 262
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00200.2 ID=NO05G00200.2|Name=NO05G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=2065bp CTCCCTCCCTCCCTCCCTCCATCCCTCCTTCCTTCCTTCCCTTTCTTCTT GGCCCCATTATCCCGTAGATCCAGCCCCTCGACGTTATGAAGACGTCAAG TCTCCGCAAGTCCCTCTTCCTTTCCGCAAAGGTCTTGAACCTAACGCGTG CTTTGGATACTTATGAGGAGATGAAAAAGCGAGGGCGGACTTTGACGCGG GACGAGTGCAACACATTGCTCTATGTTTGTCAGGAGGCAGGAGGTCCCGA GACGACGTGGAATGTCTACAAGGGTCTTAAAGGCGCTTTCGAGGAGGACG AGAACACGGCCGTCGTCCTCATTCGCTCTCTGGCCGAGCAGGGGAGGCTG GAGGAGGCGCTGGCGATGATAGAGGGGAAGAACGACAAAGTCGGCAAAGG CAAAGCCCCTCCCAAGCTGAGGATGTACACGCCCGTCCTGACCCGGCTGT GGAAGGCGGGAAATGTGACAGCTGCCAAGGAGGTGTGGGAGGGTATGATG GAAAGGGGGGCGGTGCCGAATGAAGAGCACGTGGTGTCCATGGTGGAGTG CTACGCGTCTCAAGGACCGACCGTCTTTCGGCAGCACCTCGACGACATCT CGTGCCTCTTGAATTTGTTGGGCAACAAGCTCGTGCTGAACGTGACGGAC GCAGGCATTGAGACCCTCCTGAACGCGTTCCCGTCCGGCGGTCGTGGTGG TGGAAAGGTAGCCGCAGCCCGCGTGCGCATACCCGGAAGTGGGGTGTGTC CTCATTGCCAGGGACAGTTGCGGCCGTTACGATTAGACCAGGAGGAGAGG AAGGAGCTGAGGGAGAGGCTCCTTGTCCTGGCGGAGGAGAAACAAGCAGC CTGGAAGAGCGCGGGGAAACTCGTCCTCTCCTCTCTGGCCTCCCCTGGTA GCGGCACCAACGGCTCCTCCAACGGCTCCTCCAACGGCGCCAGTGGCAGT GACAATAACGGGCCGTCCCCCTCGAAAATCATCTCGTTGAGGGCATTAGA GGCCTGGCTGAATGCCCGCCCCCCTTTTGACGTGGTCCTCGACGCCCCCA ACATTGCTTATTACGGACAGAACTTCGGGGACGGGCGCTTTAATTTCAAC CAGATCGATATAGTGCTGAAAGCCTTGAAAGCACAGGGCAAACGTGCCTT CCTGGTCATCCCTGTCAAGTACACGAGTCGCCGGATCCGGGACCACGTTC ATCGGGAAGAAGGGCAGGGAAGGGGAGGGGGGAGGGTACGGGCACTGGAC GATGAAGAGACCGCCATGCTCGAGCGTTGGACCGATGAAGGCATTGTGTA CCGCATCCCACGGGGACAACTCGATGACCTCTACTGGATGTATGCCACGG TGGCCGCGCGGAGCGACACGGCCTCCTCCCCTATGATCGCCATCTCTAAC GACTGCATGCGCGATCACTGGCTCGACCTTCTAGAAGCCCGGCCCTTCCT TCGCTGGAAAACCACCCAGGTGCAATCTTACCGTTTCGATTACTCAGTCG AAGACAACATGCCCCTCCGAGTGACCTTCAGCGAGATGGGATTCTCGCGG GAGGCACAACGCACTGCCTCATCCTCCTTCTCCTCCTCCTCCTTCTCCTC CTCCTCCTCGATCGCTCCATCATCGGATGCCGCAACAATAGTTACATCCG GAGGGGACTGTCTACACCTCCCTTCAGACAAGGCGGAAGACGAATGGCTG TGTCTCGACTTCGGGCAAGCACGGAAAGAGCTAGATGCTCTGATAGCAGC AGAAGGAAAGGCCTCGAAAAAGGGCAGTAAAGATGCAAGTACCACGAGGG GCCTCGGCTTCTTCGTCCGTCCTCGTCCAGGAGGGCTGTATGCGGGATGG GGTGGGACAAAGAAGAGGAAAGGGAAGGATGGGCATGAAGGAGGAGCAGG GGGAGGGGGAGAGGAAGGGGTTAGATAATCGTTTGGTTGGTGAAGGCAGA TGACCAAGTGCCGTGAGAAACGAAATCTAGACATACGCGTAACGTAATGC CTTAAATTTATCCAAATTAATTAGACTCTAGACTCCAGCAAAACATTGCA GCAATAGCTTCGAAA back to topprotein sequence of NO05G00200.2 >NO05G00200.2-protein ID=NO05G00200.2-protein|Name=NO05G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp MKTSSLRKSLFLSAKVLNLTRALDTYEEMKKRGRTLTRDECNTLLYVCQE AGGPETTWNVYKGLKGAFEEDENTAVVLIRSLAEQGRLEEALAMIEGKND KVGKGKAPPKLRMYTPVLTRLWKAGNVTAAKEVWEGMMERGAVPNEEHVV SMVECYASQGPTVFRQHLDDISCLLNLLGNKLVLNVTDAGIETLLNAFPS GGRGGGKVAAARVRIPGSGVCPHCQGQLRPLRLDQEERKELRERLLVLAE EKQAAWKSAGKLVLSSLASPGSGTNGSSNGSSNGASGSDNNGPSPSKIIS LRALEAWLNARPPFDVVLDAPNIAYYGQNFGDGRFNFNQIDIVLKALKAQ GKRAFLVIPVKYTSRRIRDHVHREEGQGRGGGRVRALDDEETAMLERWTD EGIVYRIPRGQLDDLYWMYATVAARSDTASSPMIAISNDCMRDHWLDLLE ARPFLRWKTTQVQSYRFDYSVEDNMPLRVTFSEMGFSREAQRTASSSFSS SSFSSSSSIAPSSDAATIVTSGGDCLHLPSDKAEDEWLCLDFGQARKELD ALIAAEGKASKKGSKDASTTRGLGFFVRPRPGGLYAGWGGTKKRKGKDGH EGGAGGGGEEGVR* back to topmRNA from alignment at chr5:88974..92906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00200.2 ID=NO05G00200.2|Name=NO05G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=3933bp|location=Sequence derived from alignment at chr5:88974..92906- (Nannochloropsis oceanica) CTCCCTCCCTCCCTCCCTCCATCCCTCCTTCCTTCCTTCCCTTTCTTCTT
GGCCCCATTATCCCGTAGATCCAGCCCCTCGACGTTATGAAGACGTCAAG
TCTCCGCAAGTCCCTCTTCCTTTCCGCAAAGGTCTTGAACCTAACGCGTG
CTTTGGATACTTATGAGGTAAGGAGGCAGGGAGGAAGGAGAAGAAGGAAT
GAGGGAAGGTGGGGATGGAGAAGGTCAGCGATCGAGTCACGAGGGAGGGA
GGGAGGAAGAGAGGGAGAGAGGGAGTGAGTATTGAGTATGACACGTGGTT
ATCTGCTCACTAGTTTCCTACACAACACACGCCTTGCTCATACCCTTAAT
AAATATTCGCACATCTCTAATACACACCTCTTATAAAAATGCACATCCGT
CTAATCTAAACAGGAGATGAAAAAGCGAGGGCGGACTTTGACGCGGGACG
AGTGCAACACATTGCTCTATGTTTGTCAGGAGGCAGGAGGTCCCGAGGTG
AGAACCACTCGAGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGCGGGTAAGAGGAGCAACCTATCCCATGCATGCATACCTATACCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTATCAGACGACGTGGAATGTCTACAA
GGGTCTTAAAGGCGCTTTCGAGGAGGACGAGAACACGGCCGTCGTCCTCA
TTCGCTCTCTGGCCGAGCAGGGGAGGCTGGAGGAGGCGCTGGCGATGATA
GAGGGGAAGAACGACAAAGTCGGTAAGAGGAGGAAGGGGAGGTAGGCAGG
GGAGGATGAGTAGGTGGAGAGAAAGGGGAGGGGGCCAGCTGATGGTTTCC
ATCCCCGGCCGCCTGTACGCTCGAGGTGACTGAAGGAGCTCGGAGTGGAA
GCGATGCTACTGCTCACTCCCCTCGTGTCCCTCCCTCCCTCTCTCCCTCC
CTCTCTCCCTCCCTAGACTCGAAGAGGTGTGTCGTCTTGCTTTTCATGCC
CTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCTTCCTTCCTTCCCTCCCT
CCCTCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCAGGCAAAGGCAAAGC
CCCTCCCAAGCTGAGGATGTACACGCCCGTCCTGACCCGGCTGTGGAAGG
CGGGAAATGTGACAGCTGCCAAGGAGGTGTGGGAGGGTATGATGGAAAGG
GGGGCGGTGCCGAATGAAGAGCACGTGGTGTCCATGGTATGAAGGGAGGG
AGGGAGAGAGGGAGGGAGGGAGAGGAGGATCGAATCGAATCGACATGATA
GAATGGGCGCCTTGAGAACGTATGCACGCTTGCCCATGATGTTTTCCTCC
CTTTCCCCCCTCCGTCCCTCCCTCTCTTCCTCCAAGGTGGAGTGCTACGC
GTCTCAAGGACCGACCGTCTTTCGGCAGCACCTCGACGACATCTCGTGCC
TCTTGAATTTGTTGGGCAACAAGCTCGTGCTGAACGTGACGGACGCAGGT
AGGTAGGTAGGTGGGTAGGGAGGGAGGAAGGGAGGGAGGGAGGAAGGAGG
GGAAGGAGATCTTTCGTGTGGGTATGAGAAGACACCGACCTGGGCAGCTG
CTGATTGGCGTGCCCATGCCACTGATACCTTTCTTCCCTCCAACCGTGCG
ATATTGTCCACGAATCATCACTGATGCCTTCCTTTCCTCCCTCTTCCCCT
CCCTCTCTCCCTCCAGGCATTGAGACCCTCCTGAACGCGTTCCCGTCCGG
CGGTCGTGGTGGTGGAAAGGTAGCCGCAGCCCGCGTGCGCATACCCGGAA
GTGGGGTGTGTCCTCATTGCCAGGGACAGTTGCGGCCGTTACGATTAGAC
CAGGAGGAGAGGAAGGAGCTGAGGGAGAGGTGAGGATGGGGGGAAGGAGG
GAGGATGGCAAGGTGGCGAAGAGGGTCAGAAACATCACGTCGACAGAAGC
CTTGCTCGGTGCTTCCCTCCCTTCCCTAACTCTCTCCTTTCCTCCTTCAT
TTAATTCTCTCCTTCATCATAACCCCAGGCTCCTTGTCCTGGCGGAGGAG
AAACAAGCAGCCTGGAAGAGCGCGGGGAAACTCGTCCTCTCCTCTCTGGC
CTCCCCTGGTAGCGGCACCAACGGCTCCTCCAACGGCTCCTCCAACGGCG
CCAGTGGCAGTGACAATAACGGGCCGTCCCCCTCGAAAATCATCTCGTTG
AGGGCATTAGAGGTGGGTGAATACAAGCAAGAACGAGCCCTAGAGACAAG
ACTGAGCATCTCTCATCACCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCTTTTATCCCTCAGGCCTGGCTGAATGCCCGCCCCCC
TTTTGACGTGGTCCTCGACGCCCCCAACATTGCTTATTACGGACAGAACT
TCGGGGACGGGCGCTTTAATTTCAACCAGATCGATATAGTGCTGAAAGCC
TTGAAAGCACAGGTAGGTGTGTAGCGTGCGACGGCGCCCTCCCTCTCTCC
CTCCCTTCCTCCCTCCCTCCTTCCAACCAGCGATCATTTGGAAATATGTA
ATGAATGCCCTGTTTCATCCCTTCCTCCCCTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCCGCAGGGCAAACGTGCCTTCCTGGTCATCCCTGTCA
AGTACACGAGTCGCCGGATCCGGGACCACGTTCATCGGGAAGAAGGGCAG
GGAAGGGGAGGGGGGAGGGTACGGGCACTGGACGATGAAGAGACCGCCAT
GCTCGAGGTAGAGGGGGAGGGAGGAAGGGAGGGAGGGAGGAAATGAGGGA
ACCACACCATATCTATAGGCGTCTTATTTAGATCACGAGGAGTACCGGCG
TTCATCGAGCCTTGCTCCCATTTACCTCCCCCCTTCCCTCCCTCCCAGCG
TTGGACCGATGAAGGCATTGTGTACCGCATCCCACGGGGACAACTCGATG
ACCTCTACTGGATGTATGCCACGGTGGCCGCGCGGTATGTTCGGAGGGAG
GGAGCGAGGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGGAAACA
CATGGCTGCTCCCTGAAGCTGGCCTTTGACCTGTTCACAGGCTTATCCTC
CCTCCCTCACTCCATCCCTCCCTCCATTTATCCCTCAGGAGCGACACGGC
CTCCTCCCCTATGATCGCCATCTCTAACGACTGCATGCGCGATCACTGGC
TCGACCTTCTAGAAGCCCGGCCCTTCCTTCGCTGGAAAACCACCCAGGTA
CTTTCGTCCTCCCTCCCCTCTTCTCTTTCCTCGCCTTGTGACTAAAGATG
ACCCCTTCCTCCCTCCCTTTCTCCGCCCCTCCCTCAGGTGCAATCTTACC
GTTTCGATTACTCAGTCGAAGACAACATGCCCCTCCGAGTGACCTTCAGC
GAGATGGGATTCTCGCGGGAGGCACAACGCACTGCCTCATCCTCCTTCTC
CTCCTCCTCCTTCTCCTCCTCCTCCTCGATCGCTCCATCATCGGATGCCG
CAACAATAGTTACATCCGGAGGGGACTGTCTACACCTCCCTTCAGACAAG
GCGGAAGACGAATGGCTGTGTCTCGACTTCGGGCAAGCACGGAAAGAGCT
AGATGCTCTGATAGCAGCAGAAGGAAAGGCCTCGAAAAAGGGCAGTAAAG
ATGCAAGTACCACGAGGGGCCTCGGCTTCTTCGTCCGTCCTCGTCCAGGA
GGGCTGTATGCGGGATGGGGTGGGACAAAGAAGAGGAAAGGGAAGGATGG
GCATGAAGGAGGAGCAGGGGGAGGGGGAGAGGAAGGGGTTAGATAATCGT
TTGGTTGGTGAAGGCAGATGACCAAGTGCCGTGAGAAACGAAATCTAGAC
ATACGCGTAACGTAATGCCTTAAATTTATCCAAATTAATTAGACTCTAGA
CTCCAGCAAAACATTGCAGCAATAGCTTCGAAA back to topCoding sequence (CDS) from alignment at chr5:88974..92906- >NO05G00200.2 ID=NO05G00200.2|Name=NO05G00200.2|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr5:88974..92906- (Nannochloropsis oceanica) ATGAAGACGTCAAGTCTCCGCAAGTCCCTCTTCCTTTCCGCAAAGGTCTT GAACCTAACGCGTGCTTTGGATACTTATGAGGAGATGAAAAAGCGAGGGC GGACTTTGACGCGGGACGAGTGCAACACATTGCTCTATGTTTGTCAGGAG GCAGGAGGTCCCGAGACGACGTGGAATGTCTACAAGGGTCTTAAAGGCGC TTTCGAGGAGGACGAGAACACGGCCGTCGTCCTCATTCGCTCTCTGGCCG AGCAGGGGAGGCTGGAGGAGGCGCTGGCGATGATAGAGGGGAAGAACGAC AAAGTCGGCAAAGGCAAAGCCCCTCCCAAGCTGAGGATGTACACGCCCGT CCTGACCCGGCTGTGGAAGGCGGGAAATGTGACAGCTGCCAAGGAGGTGT GGGAGGGTATGATGGAAAGGGGGGCGGTGCCGAATGAAGAGCACGTGGTG TCCATGGTGGAGTGCTACGCGTCTCAAGGACCGACCGTCTTTCGGCAGCA CCTCGACGACATCTCGTGCCTCTTGAATTTGTTGGGCAACAAGCTCGTGC TGAACGTGACGGACGCAGGCATTGAGACCCTCCTGAACGCGTTCCCGTCC GGCGGTCGTGGTGGTGGAAAGGTAGCCGCAGCCCGCGTGCGCATACCCGG AAGTGGGGTGTGTCCTCATTGCCAGGGACAGTTGCGGCCGTTACGATTAG ACCAGGAGGAGAGGAAGGAGCTGAGGGAGAGGCTCCTTGTCCTGGCGGAG GAGAAACAAGCAGCCTGGAAGAGCGCGGGGAAACTCGTCCTCTCCTCTCT GGCCTCCCCTGGTAGCGGCACCAACGGCTCCTCCAACGGCTCCTCCAACG GCGCCAGTGGCAGTGACAATAACGGGCCGTCCCCCTCGAAAATCATCTCG TTGAGGGCATTAGAGGCCTGGCTGAATGCCCGCCCCCCTTTTGACGTGGT CCTCGACGCCCCCAACATTGCTTATTACGGACAGAACTTCGGGGACGGGC GCTTTAATTTCAACCAGATCGATATAGTGCTGAAAGCCTTGAAAGCACAG GGCAAACGTGCCTTCCTGGTCATCCCTGTCAAGTACACGAGTCGCCGGAT CCGGGACCACGTTCATCGGGAAGAAGGGCAGGGAAGGGGAGGGGGGAGGG TACGGGCACTGGACGATGAAGAGACCGCCATGCTCGAGCGTTGGACCGAT GAAGGCATTGTGTACCGCATCCCACGGGGACAACTCGATGACCTCTACTG GATGTATGCCACGGTGGCCGCGCGGAGCGACACGGCCTCCTCCCCTATGA TCGCCATCTCTAACGACTGCATGCGCGATCACTGGCTCGACCTTCTAGAA GCCCGGCCCTTCCTTCGCTGGAAAACCACCCAGGTGCAATCTTACCGTTT CGATTACTCAGTCGAAGACAACATGCCCCTCCGAGTGACCTTCAGCGAGA TGGGATTCTCGCGGGAGGCACAACGCACTGCCTCATCCTCCTTCTCCTCC TCCTCCTTCTCCTCCTCCTCCTCGATCGCTCCATCATCGGATGCCGCAAC AATAGTTACATCCGGAGGGGACTGTCTACACCTCCCTTCAGACAAGGCGG AAGACGAATGGCTGTGTCTCGACTTCGGGCAAGCACGGAAAGAGCTAGAT GCTCTGATAGCAGCAGAAGGAAAGGCCTCGAAAAAGGGCAGTAAAGATGC AAGTACCACGAGGGGCCTCGGCTTCTTCGTCCGTCCTCGTCCAGGAGGGC TGTATGCGGGATGGGGTGGGACAAAGAAGAGGAAAGGGAAGGATGGGCAT GAAGGAGGAGCAGGGGGAGGGGGAGAGGAAGGGGTTAGATAA back to top
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