NO05G00160.1, NO05G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00160.1
Unique NameNO05G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1673
Alignment locationchr5:71062..73091 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:71062..73091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00160.1 vs.
Match: XP_005854156.1 (asparaginase [Nannochloropsis gaditana CCMP526]; EKU22208.1 asparaginase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 459.5 bits (1181), Expect = 1.000e-125
Identity = 250/369 (67.75%), Postives = 292/369 (79.13%), Query Frame = 0 
Query:   28 PKRAVAAATWHFGKLAVEEAARVLSSSSPSLSPP-------------SLALDAVEAGVNRVETDNQEQYYVGYGGFPNSEGDMELDAAIMCGTKRTYGAVCALQGTIKAISVARRVMEKSVHSVLVGKGASTFAREQGGFEWEEVLSPEAREGWMKWKEEEEEAAKNRLDGKGDDGSAAMPTAAPTAAVSAAPIDDSSQDTPQHDTIGLLVMDAQGHLAAGTSTSGWRFKHPGRVGDSPLVGSGLYADNSVGAAVATGDGEEIMRVCLSFLVVEKMREGLPPAVACQAGIKRLKEVVEGVREGEG-GRKTGMHEALTVAVLAMDKEGRVGAASTLGENNEHRGRPAFPFVVWREGEGAAWVEEANDEGT 383
            PK AV A TW FG+LAVE+AA VL SSS S + P             S+ALDAVEAG+N VE DNQ+QYYVGYGGFPN+EG+MELDAAIMCG+++TYG V ALQG  +AISVARRVME+SVHS+LVG+GASTFAR QG FEW+EVLSP ARE W+ WK  E +    ++DG+ ++ SA +P A P    + AP          HDT+GLLV+DA G+LAAGTSTSGW FKHPGRVGDSP+VGSGLYAD++VG AVATGDGEEIMRVCLSFLVVEKMREGL PA+ACQAGI+RLK ++   REG G G + GMHE+LTVAV+A+DKEGRVGAASTLGE+N HRGRP FPFVVW+EG G AWVEEA+D GT
Sbjct:    8 PKGAVVAGTWLFGRLAVEKAAEVLLSSSTSPTAPPSIDHPSETNLATSIALDAVEAGINVVELDNQDQYYVGYGGFPNAEGEMELDAAIMCGSRKTYGGVAALQGVSRAISVARRVMEESVHSLLVGRGASTFARSQG-FEWDEVLSPAAREEWLIWKGNEGKEGP-QVDGRKEE-SAGVP-APPREGDAVAP----------HDTVGLLVLDAHGNLAAGTSTSGWCFKHPGRVGDSPIVGSGLYADSAVGGAVATGDGEEIMRVCLSFLVVEKMREGLGPALACQAGIQRLKVLI---REGGGEGERQGMHESLTVAVMALDKEGRVGAASTLGEHNRHRGRPGFPFVVWKEGLGKAWVEEADDTGT 359
The following BLAST results are available for this feature:
BLAST of NO05G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854156.11.000e-12567.75asparaginase [Nannochloropsis gaditana CCMP526]; E... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00160NO05G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00160.1NO05G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00160.1.cds1NO05G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00160.1.cds2NO05G00160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00160.1.cds3NO05G00160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00160.1 ID=NO05G00160.1|Name=NO05G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
CCGGTCCACCCAAACCAGCGCATTTCCAGTCATCAAAGCCACGCCTCGTG
GAGATGTCCGAACTCGCTTGTGCTGTATTTTTTTTCCCGGTAAATTAGCC
CACCATTTGAGTGGGTTAGGGCATGTAAGATGTGTGCGTGGCCGTTGTTC
CTCAAACCTCCTGCCTTTTCCTGTCGTCCAAGGCCACAGACCATTGGCCT
CTGTTCAGGGGACGGCTGGGCTTGAAATGCGTCGCAAAGAAAAGATGCAA
TAAATTGTTCTCAGTGGTGGCCTTGCGCAGTCCCTTCCCCTTCATTCCAT
TTCTTCCCTTCCCTCCTCCTACCACCATTCCTCCCTCCCTCTCTCCGTTA
TAAGCACGACAGATTTCCTCCAGAGTGCACCATGCCCGCCCATTTTGATG
TCCCCGCTTTTATGAACTTTCTTTCTGGTCTCAGCGGATCAGCCACTGTT
CCTTTATTTCGATTGCTCTGGTGGTAACTTTCCTTCCCCTCTCCATATGT
ACGACAGTGTCTCCAATTCGCATGCCCCGTTCCTCACGCATCCTGATTCT
GCTGCTGCCCATCCTGATTCCGATGAGTCATGCATACAGCCCTACTACTG
CTCCCAAACGCGCTGTGGCAGCGGCCACTTGGCATTTTGGCAAGCTTGCC
GTCGAGGAGGCCGCGCGGGTCCTTTCCTCCTCCTCTCCCTCCCTCTCTCC
TCCCTCCCTCGCCCTCGACGCCGTCGAGGCCGGTGTCAACCGAGTAGAAA
CGGATAATCAAGAGCAGTACTACGTGGGATACGGTGGATTTCCCAATTCT
GAAGGGGACATGGAGCTCGACGCTGCCATCATGTGCGGAACGAAAAGGAC
CTATGGCGCAGTCTGTGCCTTGCAGGGCACAATCAAAGCCATCTCTGTCG
CTCGCCGGGTCATGGAGAAGTCGGTGCACAGCGTCTTGGTGGGCAAGGGT
GCCAGTACCTTTGCCAGAGAGCAAGGAGGATTTGAATGGGAGGAGGTGTT
GAGCCCCGAGGCCCGGGAGGGGTGGATGAAGTGGAAGGAGGAAGAGGAGG
AGGCAGCGAAGAACAGATTGGATGGAAAAGGAGACGACGGGTCTGCAGCC
ATGCCCACAGCCGCACCAACAGCCGCAGTGTCAGCAGCTCCCATCGACGA
TAGCTCACAGGACACTCCTCAGCATGATACCATAGGCCTCCTTGTCATGG
ATGCTCAGGGACACCTGGCCGCGGGCACCTCTACCTCCGGGTGGCGCTTT
AAGCACCCTGGGCGCGTGGGCGATTCTCCCTTGGTGGGTAGTGGCTTGTA
CGCCGACAATTCTGTTGGTGCTGCCGTTGCCACGGGAGACGGTGAAGAGA
TCATGCGAGTCTGTCTCTCCTTCCTCGTTGTCGAAAAAATGCGGGAGGGC
CTCCCCCCCGCCGTTGCCTGTCAAGCCGGCATCAAACGGTTGAAGGAGGT
GGTGGAGGGAGTGAGGGAGGGAGAGGGAGGGAGGAAGACGGGGATGCATG
AGGCCTTGACCGTGGCAGTGCTGGCGATGGATAAGGAGGGGAGGGTGGGG
GCGGCGTCCACGCTGGGCGAGAACAATGAGCATAGAGGAAGACCGGCTTT
TCCGTTTGTGGTGTGGCGGGAGGGGGAGGGGGCGGCGTGGGTGGAGGAGG
CGAATGATGAGGGCACGGACTGA
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protein sequence of NO05G00160.1

>NO05G00160.1-protein ID=NO05G00160.1-protein|Name=NO05G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MPRSSRILILLLPILIPMSHAYSPTTAPKRAVAAATWHFGKLAVEEAARV
LSSSSPSLSPPSLALDAVEAGVNRVETDNQEQYYVGYGGFPNSEGDMELD
AAIMCGTKRTYGAVCALQGTIKAISVARRVMEKSVHSVLVGKGASTFARE
QGGFEWEEVLSPEAREGWMKWKEEEEEAAKNRLDGKGDDGSAAMPTAAPT
AAVSAAPIDDSSQDTPQHDTIGLLVMDAQGHLAAGTSTSGWRFKHPGRVG
DSPLVGSGLYADNSVGAAVATGDGEEIMRVCLSFLVVEKMREGLPPAVAC
QAGIKRLKEVVEGVREGEGGRKTGMHEALTVAVLAMDKEGRVGAASTLGE
NNEHRGRPAFPFVVWREGEGAAWVEEANDEGTD*
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mRNA from alignment at chr5:71062..73091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00160.1 ID=NO05G00160.1|Name=NO05G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at chr5:71062..73091- (Nannochloropsis oceanica)
CCGGTCCACCCAAACCAGCGCATTTCCAGTCATCAAAGCCACGCCTCGTG
GAGATGTCCGAACTCGCTTGTGCTGTATTTTTTTTCCCGGTAAATTAGCC
CACCATTTGAGTGGGTTAGGGCATGTAAGATGTGTGCGTGGCCGTTGTTC
CTCAAACCTCCTGCCTTTTCCTGTCGTCCAAGGCCACAGACCATTGGCCT
CTGTTCAGGGGACGGCTGGGCTTGAAATGCGTCGCAAAGAAAAGATGCAA
TAAATTGTTCTCAGTGGTGGCCTTGCGCAGTCCCTTCCCCTTCATTCCAT
TTCTTCCCTTCCCTCCTCCTACCACCATTCCTCCCTCCCTCTCTCCGTTA
TAAGCACGACAGATTTCCTCCAGAGTGCACCATGCCCGCCCATTTTGATG
TCCCCGCTTTTATGAACTTTCTTTCTGGTCTCAGCGGATCAGCCACTGTT
CCTTTATTTCGATTGCTCTGGTGGTAACTTTCCTTCCCCTCTCCATATGT
ACGACAGTGTCTCCAATTCGCATGCCCCGTTCCTCACGCATCCTGATTCT
GCTGCTGCCCATCCTGATTCCGATGAGTCATGCATACAGCCCTACTACTG
CTCCCAAACGCGCTGTGGCAGCGGCCACTTGGCATTTTGGCAAGCTTGCC
GTCGAGGAGGCCGCGCGGGTCCTTTCCTCCTCCTCTCCCTCCCTCTCTCC
TCCCTCCCTCGCCCTCGACGCCGTCGAGGCCGGTGTCAACCGAGTAGAAA
CGGATAATCAAGAGCAGTACTACGTGGGATACGGTGGATTTCCCAATTCT
GAAGGGGACATGGAGCTCGACGCTGCCATCATGTGCGGAACGAAAAGGAC
CTATGGCGCAGTCTGTGCCTTGCAGGTGAGGGGGTGACGGATGGGGGGAA
CGAGGGAGGAGCGGCCGGACGTTGCAGCGACGCAATAGTCAAAGCCGTGT
CTGACATCTGCCAATGTCTTATCTCCCTACCTCTTGGATTTTGTGATAAC
CATGTCCACCTTTCCTCCTTCCTTTCTTTTCTCCCTCCTCCCTTTCTTGT
TGTGCAGGGCACAATCAAAGCCATCTCTGTCGCTCGCCGGGTCATGGAGA
AGTCGGTGCACAGCGTCTTGGTGGGCAAGGGTGCCAGTACCTTTGCCAGA
GAGCAAGGAGGATTTGAATGGGAGGAGGTGTTGAGCCCCGAGGCCCGGGA
GGGGTGGATGAAGTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGAACAGAT
TGGATGGAAAAGGAGACGACGGGTCTGCAGCCATGCCCACAGCCGCACCA
ACAGCCGCAGTGTCAGCAGCTCCCATCGACGATAGCTCACAGGACACTCC
TCAGCATGATACCATAGGCCTCCTTGTCATGGATGCTCAGGGACACCTGG
CCGCGGGCACCTCTACCTCCGGGTGGCGCTTTAAGCACCCTGGTATGTGC
GTGGATGAGTCTGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
TTCCCGTCATTACTTCATTCTACCGTTGTCATGATCGACAGTGGATTCAG
TTGGGGTTACTTCCTGTCTTGCCCTTCCTTCCTCCCTCCCTCCCTCCCTC
TCTCCCTCTCGTCTCAGGGCGCGTGGGCGATTCTCCCTTGGTGGGTAGTG
GCTTGTACGCCGACAATTCTGTTGGTGCTGCCGTTGCCACGGGAGACGGT
GAAGAGATCATGCGAGTCTGTCTCTCCTTCCTCGTTGTCGAAAAAATGCG
GGAGGGCCTCCCCCCCGCCGTTGCCTGTCAAGCCGGCATCAAACGGTTGA
AGGAGGTGGTGGAGGGAGTGAGGGAGGGAGAGGGAGGGAGGAAGACGGGG
ATGCATGAGGCCTTGACCGTGGCAGTGCTGGCGATGGATAAGGAGGGGAG
GGTGGGGGCGGCGTCCACGCTGGGCGAGAACAATGAGCATAGAGGAAGAC
CGGCTTTTCCGTTTGTGGTGTGGCGGGAGGGGGAGGGGGCGGCGTGGGTG
GAGGAGGCGAATGATGAGGGCACGGACTGA
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Coding sequence (CDS) from alignment at chr5:71062..73091-

>NO05G00160.1 ID=NO05G00160.1|Name=NO05G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr5:71062..73091- (Nannochloropsis oceanica)
ATGCCCCGTTCCTCACGCATCCTGATTCTGCTGCTGCCCATCCTGATTCC
GATGAGTCATGCATACAGCCCTACTACTGCTCCCAAACGCGCTGTGGCAG
CGGCCACTTGGCATTTTGGCAAGCTTGCCGTCGAGGAGGCCGCGCGGGTC
CTTTCCTCCTCCTCTCCCTCCCTCTCTCCTCCCTCCCTCGCCCTCGACGC
CGTCGAGGCCGGTGTCAACCGAGTAGAAACGGATAATCAAGAGCAGTACT
ACGTGGGATACGGTGGATTTCCCAATTCTGAAGGGGACATGGAGCTCGAC
GCTGCCATCATGTGCGGAACGAAAAGGACCTATGGCGCAGTCTGTGCCTT
GCAGGGCACAATCAAAGCCATCTCTGTCGCTCGCCGGGTCATGGAGAAGT
CGGTGCACAGCGTCTTGGTGGGCAAGGGTGCCAGTACCTTTGCCAGAGAG
CAAGGAGGATTTGAATGGGAGGAGGTGTTGAGCCCCGAGGCCCGGGAGGG
GTGGATGAAGTGGAAGGAGGAAGAGGAGGAGGCAGCGAAGAACAGATTGG
ATGGAAAAGGAGACGACGGGTCTGCAGCCATGCCCACAGCCGCACCAACA
GCCGCAGTGTCAGCAGCTCCCATCGACGATAGCTCACAGGACACTCCTCA
GCATGATACCATAGGCCTCCTTGTCATGGATGCTCAGGGACACCTGGCCG
CGGGCACCTCTACCTCCGGGTGGCGCTTTAAGCACCCTGGGCGCGTGGGC
GATTCTCCCTTGGTGGGTAGTGGCTTGTACGCCGACAATTCTGTTGGTGC
TGCCGTTGCCACGGGAGACGGTGAAGAGATCATGCGAGTCTGTCTCTCCT
TCCTCGTTGTCGAAAAAATGCGGGAGGGCCTCCCCCCCGCCGTTGCCTGT
CAAGCCGGCATCAAACGGTTGAAGGAGGTGGTGGAGGGAGTGAGGGAGGG
AGAGGGAGGGAGGAAGACGGGGATGCATGAGGCCTTGACCGTGGCAGTGC
TGGCGATGGATAAGGAGGGGAGGGTGGGGGCGGCGTCCACGCTGGGCGAG
AACAATGAGCATAGAGGAAGACCGGCTTTTCCGTTTGTGGTGTGGCGGGA
GGGGGAGGGGGCGGCGTGGGTGGAGGAGGCGAATGATGAGGGCACGGACT
GA
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Synonyms
Publications